From 56f12a65a0829bd6d8e8f6c4d04102e5273bd09e Mon Sep 17 00:00:00 2001 From: Jakub Kądziołka Date: Sun, 19 Jul 2020 15:46:13 +0200 Subject: gnu: r-rhdf5lib: Fix libsz substitution. This is a follow-up to commit b7f051db14fb485fcfa4917924eef186fb1b8c07 - in the new version, some of the format strings being replaced gained quotes. This commit fixes build of dependents of r-rhdf5lib, such as r-hdf5array. * gnu/packages/bioinformatics (r-rhdf5lib): Remove all instances of libsz.a. --- gnu/packages/bioinformatics.scm | 9 +-------- 1 file changed, 1 insertion(+), 8 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8a6be59d2a..681919df3d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10867,14 +10867,7 @@ block processing.") (for-each delete-file '("configure" "configure.ac")) ;; Do not make other packages link with the proprietary libsz. (substitute* "R/zzz.R" - (("'\"%s/libhdf5.a\" \"%s/libsz.a\" -lz'") - "'\"%s/libhdf5.a\" \"%s/libhdf5.a\" -lz'") - (("'\"%s/libhdf5_cpp.a\" \"%s/libhdf5.a\" \"%s/libsz.a\" -lz'") - "'\"%s/libhdf5_cpp.a\" \"%s/libhdf5.a\" \"%s/libhdf5.a\" -lz'") - (("'%s/libhdf5_hl.a %s/libhdf5.a %s/libsz.a -lz'") - "'%s/libhdf5_hl.a %s/libhdf5.a %s/libhdf5.a -lz'") - (("'%s/libhdf5_hl_cpp.a %s/libhdf5_hl.a %s/libhdf5_cpp.a %s/libhdf5.a %s/libsz.a -lz'") - "'%s/libhdf5_hl_cpp.a %s/libhdf5_hl.a %s/libhdf5_cpp.a %s/libhdf5.a %s/libhdf5.a -lz'")) + ((" \"%s/libsz.a\"") "")) (with-directory-excursion "src" (invoke "tar" "xvf" (assoc-ref inputs "hdf5-source")) (rename-file (string-append "hdf5-" ,(package-version hdf5-1.10)) -- cgit v1.2.3