From 443ed83bc3125db1b6d5474416359921e2ea4ce0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:13 +0000
Subject: gnu: r-annotationdbi: Update to 1.56.2.

* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d36d070a56..ca7b8b2030 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2026,13 +2026,13 @@ microarrays.")
 (define-public r-annotationdbi
   (package
     (name "r-annotationdbi")
-    (version "1.56.1")
+    (version "1.56.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "AnnotationDbi" version))
               (sha256
                (base32
-                "1svh5zcb7ymz463z5641l2cvzniswxasjjix2plfhqs0yqf1j9qg"))))
+                "01zwq14msbbwzxv8rgpmyr74ymvhq0vnmxkxxwd886iac5vjlgi8"))))
     (properties
      `((upstream-name . "AnnotationDbi")))
     (build-system r-build-system)
-- 
cgit v1.2.3


From 30038c57382b32043e7b6e655026b1b8e94ae904 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:19 +0000
Subject: gnu: r-chipseeker: Update to 1.30.2.

* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ca7b8b2030..07da2e1b0f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2459,13 +2459,13 @@ analysis.")
 (define-public r-chipseeker
   (package
     (name "r-chipseeker")
-    (version "1.30.0")
+    (version "1.30.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "ChIPseeker" version))
               (sha256
                (base32
-                "1x8px8ylc231g87rd48kmy9y36h26rldbmqjkcj4mgaldvbsj0rp"))))
+                "1nr5p1h9131rvbpnh2kizzx9q6f4ycq6rzxy1yqg2pczqcg7hy4x"))))
     (build-system r-build-system)
     (native-inputs
      `(("r-knitr" ,r-knitr)))
-- 
cgit v1.2.3


From f917fa4e50c3f39170de531b77fd7e96e5331f85 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:20 +0000
Subject: gnu: r-ensembldb: Update to 2.18.2.

* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 07da2e1b0f..1e95c84e5a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2822,14 +2822,14 @@ CAGE.")
 (define-public r-ensembldb
   (package
     (name "r-ensembldb")
-    (version "2.18.0")
+    (version "2.18.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ensembldb" version))
        (sha256
         (base32
-         "02rdbqp33g488w1df1rgp0dg63qrr6w2kmgigxzc8l9wmrvj0y1j"))))
+         "0q56gv0isa9ayw505py7i7x65pvcshmd2j1mna1wpbk66wqj4qzx"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-annotationdbi" ,r-annotationdbi)
-- 
cgit v1.2.3


From 6b1375d3afdd81d58ba243cdbd75d86855054271 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:20 +0000
Subject: gnu: r-msnbase: Update to 2.20.1.

* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e95c84e5a..1fd99a5b00 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3518,14 +3518,14 @@ in SNV base substitution data.")
 (define-public r-msnbase
   (package
     (name "r-msnbase")
-    (version "2.20.0")
+    (version "2.20.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "MSnbase" version))
        (sha256
         (base32
-         "1r5igzb7xb5qcw37ffy0c3j6vlg9zffmksrc57rs1pmfnca773z5"))))
+         "0ip614mdwisz2hlmyfgngysq1s3hajb88cgdmygfc8i6kyxjkjzl"))))
     (properties `((upstream-name . "MSnbase")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 34ba8b256b5f46550e1d5a1596cda13fbc5c16aa Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:21 +0000
Subject: gnu: r-systempiper: Update to 2.0.1.

* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1fd99a5b00..01bfbfe17b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4442,14 +4442,14 @@ unmodeled, or latent sources of noise.")
 (define-public r-systempiper
   (package
     (name "r-systempiper")
-    (version "2.0.0")
+    (version "2.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "systemPipeR" version))
        (sha256
         (base32
-         "0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1"))))
+         "1r0qc1pyff9nvjix21xjd6fmka06ywr4ipr8szm52hq41hwaiqgq"))))
     (properties `((upstream-name . "systemPipeR")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From e52eb93765c73ae6a9ae7f98572d917326da97e8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:21 +0000
Subject: gnu: r-treeio: Update to 1.18.1.

* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 01bfbfe17b..a3fcebf2de 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5825,14 +5825,14 @@ multiplication.")
 (define-public r-treeio
   (package
     (name "r-treeio")
-    (version "1.18.0")
+    (version "1.18.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "treeio" version))
        (sha256
         (base32
-         "03gz378qrp6b9fcriqanfnphibqv4bxhvz48rigzkidkzz71wfaj"))))
+         "19i8jhvycv57zbxhpn5gx5ymdiws64kc3nidc00xh1j9a8xkj1aq"))))
     (properties `((upstream-name . "treeio")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 7e9a13d78927999f6aff35c3b1fdff918b114d76 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:22 +0000
Subject: gnu: r-ggtree: Update to 3.2.1.

* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a3fcebf2de..6ce785e295 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5857,14 +5857,14 @@ platform for merging tree with associated data and converting file formats.")
 (define-public r-ggtree
   (package
     (name "r-ggtree")
-    (version "3.2.0")
+    (version "3.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ggtree" version))
        (sha256
         (base32
-         "1c6b7kjh44k096v8mhn53abr181vpbn7s6ab7zk4phnsyfxsclxb"))))
+         "0qk39gdpy4kznjhmvi25y2spcdj2r1i6mv673vx8dzf66zfs20v8"))))
     (properties `((upstream-name . "ggtree")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From f4b108d8723d3bc3ce00261fe1c2edc614ea86d8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:22 +0000
Subject: gnu: r-icobra: Update to 1.22.1.

* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6ce785e295..9665446e6e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6315,14 +6315,14 @@ independent of the p-value under the null hypothesis.")
 (define-public r-icobra
   (package
     (name "r-icobra")
-    (version "1.22.0")
+    (version "1.22.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "iCOBRA" version))
        (sha256
         (base32
-         "0qg32g1rfvh6mx8wny1lrva9vc347288hzml7yb4rnrsx1hggkpa"))))
+         "05j3h314l2bw8n61h1nyiqhm3z7c1axycn4p3xkfccq5i4mcqvn2"))))
     (properties `((upstream-name . "iCOBRA")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From d30d9c6001e8a4e7821073fe80d44f656fc328d2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:23 +0000
Subject: gnu: r-geoquery: Update to 2.62.1.

* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1.
[propagated-inputs]: Add r-r-utils.
---
 gnu/packages/bioconductor.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9665446e6e..4693ca1993 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6726,14 +6726,14 @@ high-throughput analyses.")
 (define-public r-geoquery
   (package
     (name "r-geoquery")
-    (version "2.62.0")
+    (version "2.62.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "GEOquery" version))
        (sha256
         (base32
-         "0fkx4jh1s76l015vwikkryarlx6iihb1z935nzpdhah3rpqx3b3z"))))
+         "0plmh4x37r848g6ilvl1x8cim90rp85gikfc5m8lgi2i4xkq7hbq"))))
     (properties `((upstream-name . "GEOquery")))
     (build-system r-build-system)
     (propagated-inputs
@@ -6743,6 +6743,7 @@ high-throughput analyses.")
        ("r-httr" ,r-httr)
        ("r-limma" ,r-limma)
        ("r-magrittr" ,r-magrittr)
+       ("r-r-utils" ,r-r-utils)
        ("r-readr" ,r-readr)
        ("r-tidyr" ,r-tidyr)
        ("r-xml2" ,r-xml2)))
-- 
cgit v1.2.3


From a03c84244d500ad9120cd9c48d32a12661b4a0b9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:23 +0000
Subject: gnu: r-rsubread: Update to 2.8.1.

* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4693ca1993..2c3929a1ea 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9551,14 +9551,14 @@ annotations.")
 (define-public r-rsubread
   (package
     (name "r-rsubread")
-    (version "2.8.0")
+    (version "2.8.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "Rsubread" version))
        (sha256
         (base32
-         "09kd7vl2z9k82ppfzy679hs7d00c60z3w3n6a8wq4z3k3f4glc3s"))))
+         "0lpx0dp5570kbrq7v0g573axkhi00qrf38si59vmvnqxhmkvsixn"))))
     (properties `((upstream-name . "Rsubread")))
     (build-system r-build-system)
     (inputs `(("zlib" ,zlib)))
-- 
cgit v1.2.3


From 63504133252e23616742bbe308d283efd8a62d09 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:24 +0000
Subject: gnu: r-mixomics: Update to 6.18.0.

* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2c3929a1ea..05f6c4870e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10114,14 +10114,14 @@ self-organizing map clustering and minimal spanning trees.")
 (define-public r-mixomics
   (package
     (name "r-mixomics")
-    (version "6.17.26")
+    (version "6.18.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "mixOmics" version))
        (sha256
         (base32
-         "10ir4876sjmw2mw0cjvshwy3qyhsyz6g1ihyr3dycgzya0jcxw1x"))))
+         "0jwkb5scc33nfn2mibga8vp00pmc24ham71gpkbizvy43cy85icf"))))
     (properties `((upstream-name . "mixOmics")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 3cfeeace839ace247964be159c1e7ba827f62799 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:24 +0000
Subject: gnu: r-biocpkgtools: Update to 1.12.2.

* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 05f6c4870e..6b925d9891 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11979,14 +11979,14 @@ gene selection, testing relationships, and so on.")
 (define-public r-biocpkgtools
   (package
     (name "r-biocpkgtools")
-    (version "1.12.0")
+    (version "1.12.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "BiocPkgTools" version))
        (sha256
         (base32
-         "13m6h35938407ajj7fakl50g4p2wsvinkg0r2mwl1zwq88735arg"))))
+         "1yz2sgx4xrnw22k3d6q6hkj213bnbb4hbr5ymxnmjnsz551s75ny"))))
     (properties `((upstream-name . "BiocPkgTools")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From ef5bbc34161fcad0e46e73307542b96ba6205ef0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:25 +0000
Subject: gnu: r-biocset: Update to 1.8.1.

* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6b925d9891..ba3a7d7ed9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12027,14 +12027,14 @@ analytics on packages.")
 (define-public r-biocset
   (package
     (name "r-biocset")
-    (version "1.8.0")
+    (version "1.8.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "BiocSet" version))
        (sha256
         (base32
-         "0ysm68gcalg3d91jx6vmdzra01vc6kvzqnvz557g3rnm0wkx12q6"))))
+         "1x5ar9byr85iap2x6y66j31fi17wr31awx1gl3z01sckp0dldx6w"))))
     (properties `((upstream-name . "BiocSet")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From ddb9d228b468ffe31bb432ca0b106e1350a7b866 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:25 +0000
Subject: gnu: r-s4vectors: Update to 0.32.2.

* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ba3a7d7ed9..a550f04161 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12379,13 +12379,13 @@ routines.")
 (define-public r-s4vectors
   (package
     (name "r-s4vectors")
-    (version "0.32.0")
+    (version "0.32.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "S4Vectors" version))
               (sha256
                (base32
-                "1zm1xlqrq1f9xa81j3ij2p78g3aywq7izsk3h40z94fjggahvc09"))))
+                "0xrmii2dnwyknpjdiwwjlklgzpbk9q09br27rq5ffz08if9yyk20"))))
     (properties
      `((upstream-name . "S4Vectors")))
     (build-system r-build-system)
-- 
cgit v1.2.3


From 0f72bdada51ef5fd452b3f5905a95bf5059430b4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:26 +0000
Subject: gnu: r-hdf5array: Update to 1.22.1.

* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a550f04161..5c1a8b83a4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12539,14 +12539,14 @@ provided.")
 (define-public r-hdf5array
   (package
     (name "r-hdf5array")
-    (version "1.22.0")
+    (version "1.22.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "HDF5Array" version))
        (sha256
         (base32
-         "13h6qr4zkynir0ck2aiasjvlid7hrk3m2lzkjyhpvbg1a15r8zi9"))))
+         "1al4a88pgdl7hfhphsnwl1gg1c1kmw37wcdr4v4pfsw5l8ff7nx4"))))
     (properties `((upstream-name . "HDF5Array")))
     (build-system r-build-system)
     (inputs
-- 
cgit v1.2.3


From 34d17d5f62315af0581db999a5d8d141d707ec74 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:26 +0000
Subject: gnu: r-scran: Update to 1.22.1.

* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5c1a8b83a4..11200fa792 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12964,14 +12964,14 @@ quality control.")
 (define-public r-scran
   (package
     (name "r-scran")
-    (version "1.22.0")
+    (version "1.22.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "scran" version))
        (sha256
         (base32
-         "1nyvbss4914giwzp5wiw9g4z5b6lr5iprbjrqlg4vpgnf1hz8k7l"))))
+         "06lcxya6rpa8dv0il7m7fwyx0ci1y1jn16ff5lmvzf2mnr6q7lic"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-beachmat" ,r-beachmat)
-- 
cgit v1.2.3


From 13f8140290e2bb334e114314ab168fd4adf3eb67 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:27 +0000
Subject: gnu: r-chromstar: Update to 1.20.2.

* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 11200fa792..5d1988cdd6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13790,14 +13790,14 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.")
 (define-public r-chromstar
   (package
     (name "r-chromstar")
-    (version "1.19.0")
+    (version "1.20.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "chromstaR" version))
        (sha256
         (base32
-         "0z511l26fhz00qn8h2yybylk8c3ws8hj1hp8hq9qj9mfczwiqy3j"))))
+         "1akcmxzn4j9ph4n3lsgfh8fh8hrb28jjamz037w59bsdkcv6wyjq"))))
     (properties `((upstream-name . "chromstaR")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 6a5e5bb9e2fd7403d7c70f3bbbc855559559c16b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:27 +0000
Subject: gnu: r-biodb: Update to 1.2.1.

* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5d1988cdd6..f8e5ff980e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14269,14 +14269,14 @@ the Bioconductor project.")
 (define-public r-biodb
   (package
     (name "r-biodb")
-    (version "1.2.0")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "biodb" version))
        (sha256
         (base32
-         "0q343zbx341xdy634p50k7bj6byv8v2rqzy50nw75a79206pajl4"))))
+         "1z4adapsnpw6fwanihdz43r11ijypxs5wbndb1i98j8kb7wf308k"))))
     (properties `((upstream-name . "biodb")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 93b2ce1197d2dcda81b900a89545f8f6f00ac570 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 18 Nov 2021 13:15:28 +0000
Subject: gnu: r-tximeta: Update to 1.12.3.

* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.3.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f8e5ff980e..977fd99e03 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14845,14 +14845,14 @@ estimates, etc.")
 (define-public r-tximeta
   (package
     (name "r-tximeta")
-    (version "1.12.0")
+    (version "1.12.3")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "tximeta" version))
        (sha256
         (base32
-         "03fbz6pka7bcbhd0bblgckyxsqhzp4n8qp2dcpdb3sr01lyw4bc5"))))
+         "15l1jvfis7xzxwwnlqs8xpaf212v1lx513np2dc4l4h7rqhclm2v"))))
     (properties `((upstream-name . "tximeta")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 6fc80d9d4c6712f3da71ab09290163c7441adabe Mon Sep 17 00:00:00 2001
From: Vagrant Cascadian <vagrant@debian.org>
Date: Thu, 18 Nov 2021 14:00:27 -0800
Subject: gnu: r-msfeatures: Fix typos.

* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Switch from
  "allows to" to "can be used" and from "allows to aggregate" to "allows
  aggregating".
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 977fd99e03..90b49d5118 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13124,9 +13124,9 @@ within the R for Mass Spectrometry packages.")
      "The MsFeature package defines functionality for Mass Spectrometry
 features.  This includes functions to group (LC-MS) features based on some of
 their properties, such as retention time (coeluting features), or correlation
-of signals across samples.  This package hence allows to group features, and
+of signals across samples.  This package hence can be used to group features, and
 its results can be used as an input for the @code{QFeatures} package which
-allows to aggregate abundance levels of features within each group.  This
+allows aggregating abundance levels of features within each group.  This
 package defines concepts and functions for base and common data types,
 implementations for more specific data types are expected to be implemented in
 the respective packages (such as e.g. @code{xcms}).")
-- 
cgit v1.2.3


From b23d7aa880c3017235009ad16d2b5464d08ccb86 Mon Sep 17 00:00:00 2001
From: Vagrant Cascadian <vagrant@debian.org>
Date: Thu, 18 Nov 2021 14:05:54 -0800
Subject: gnu: r-bgeecall: Fix typo.

* gnu/packages/bioconductor.scm (r-bgeecall)[description]: Switch from "allows
  to generate" to "allows generating".
---
 gnu/packages/bioconductor.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 90b49d5118..5d29a3acf2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14009,7 +14009,7 @@ real numbers.")
     (home-page "https://github.com/BgeeDB/BgeeCall")
     (synopsis "RNA-Seq present/absent gene expression calls generation")
     (description
-     "BgeeCall allows to generate present/absent gene expression calls without
+     "BgeeCall allows generating present/absent gene expression calls without
 using an arbitrary cutoff like TPM<1.  Calls are generated based on reference
 intergenic sequences.  These sequences are generated based on expression of
 all RNA-Seq libraries of each species integrated in Bgee.")
-- 
cgit v1.2.3