From 3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 15 Mar 2021 12:15:18 +0100 Subject: gnu: r-gkmsvm: Move back to (gnu packages cran). * gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here... * gnu/packages/cran.scm (r-gkmsvm): ...to here. --- gnu/packages/bioconductor.scm | 27 --------------------------- 1 file changed, 27 deletions(-) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 526c2eecbb..4f8e0562b1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4042,33 +4042,6 @@ visualising metrics relative to experiment run time or spatially over the surface of a flowcell.") (license license:expat))) -;; This is a CRAN package, but it depends on packages from Bioconductor. -(define-public r-gkmsvm - (package - (name "r-gkmsvm") - (version "0.81.0") - (source - (origin - (method url-fetch) - (uri (cran-uri "gkmSVM" version)) - (sha256 - (base32 - "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj")))) - (properties `((upstream-name . "gkmSVM"))) - (build-system r-build-system) - (propagated-inputs - `(("r-kernlab" ,r-kernlab) - ("r-rcpp" ,r-rcpp) - ("r-rocr" ,r-rocr) - ("r-seqinr" ,r-seqinr))) - (home-page "https://cran.r-project.org/web/packages/gkmSVM") - (synopsis "Gapped-kmer support vector machine") - (description - "This R package provides tools for training gapped-kmer SVM classifiers -for DNA and protein sequences. This package supports several sequence -kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") - (license license:gpl2+))) - ;; This is a CRAN package, but it depends on multtest from Bioconductor. (define-public r-mutoss (package -- cgit v1.2.3