From 3699bcf54ac51c99c2807afd60d1eeebc00329ec Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Sun, 26 Apr 2020 21:07:45 +0200
Subject: gnu: Add r-motifdb.

* gnu/packages/bioconductor.scm (r-motifdb): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2d7663715a..9ecf42e783 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3998,6 +3998,30 @@ database (e.g. JASPAR).  It can also be used to visualize motifs, motif
 distributions, modules and filter motifs.")
     (license license:gpl2)))
 
+(define-public r-motifdb
+  (package
+   (name "r-motifdb")
+   (version "1.28.0")
+   (source (origin
+            (method url-fetch)
+            (uri (bioconductor-uri "MotifDb" version))
+            (sha256
+             (base32 "0m5apkjlvdq9yhjdyds3hivfnkbm6f059hy2bkjhalrlhd2si2jc"))))
+   (properties `((upstream-name . "MotifDb")))
+   (build-system r-build-system)
+   (propagated-inputs
+    `(("r-biocgenerics" ,r-biocgenerics)
+      ("r-biostrings" ,r-biostrings)
+      ("r-iranges" ,r-iranges)
+      ("r-rtracklayer" ,r-rtracklayer)
+      ("r-s4vectors" ,r-s4vectors)
+      ("r-splitstackshape" ,r-splitstackshape)))
+   (home-page "https://www.bioconductor.org/packages/MotifDb/")
+   (synopsis "Annotated collection of protein-DNA binding sequence motifs")
+   (description "This package provides more than 2000 annotated position
+frequency matrices from nine public sources, for multiple organisms.")
+   (license license:artistic2.0)))
+
 (define-public r-motifstack
   (package
     (name "r-motifstack")
-- 
cgit v1.2.3