From f336cc4fe739819115c99bc58122024241640cab Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sun, 24 Oct 2021 18:44:57 +0000
Subject: gnu: bowtie: Replace invalid characters.

* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace invalid quotes
with straight quotes in the 'configure phase.
---
 gnu/packages/bioinformatics.scm | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4743e56abc..c03ffaf2ff 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1701,7 +1701,12 @@ errors at the end of reads.")
              (string-append "prefix=" (assoc-ref %outputs "out")))
        #:phases
        (modify-phases %standard-phases
-         (delete 'configure)
+         (replace 'configure
+           (lambda _
+             ;; This "extended character" is not considered valid.
+             (substitute* "processor_support.h"
+               (("“") "\"")
+               (("”") "\""))))
          (replace 'check
            (lambda _
              (invoke "perl"
-- 
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