From eb8da54170919bc31946f492da1071dd491e942a Mon Sep 17 00:00:00 2001 From: hli Date: Tue, 30 Mar 2021 00:53:51 +0200 Subject: gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene. * gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6b5c0a0391..171736064c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -619,6 +619,32 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.") "This package exposes an annotation database generated from Ensembl.") (license license:artistic2.0))) +(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene + (package + (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene") + (version "3.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "TxDb.Dmelanogaster.UCSC.dm6.ensGene" + version 'annotation)) + (sha256 + (base32 + "0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4")))) + (properties + `((upstream-name . "TxDb.Dmelanogaster.UCSC.dm6.ensGene"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-genomicfeatures" ,r-genomicfeatures))) + (home-page + "https://bioconductor.org/packages/TxDb.Dmelanogaster.UCSC.dm6.ensGene") + (synopsis "Annotation package for TxDb object(s)") + (description + "This package exposes an annotation databases generated from UCSC by +exposing these as TxDb objects.") + (license license:artistic2.0))) + (define-public r-txdb-hsapiens-ucsc-hg19-knowngene (package (name "r-txdb-hsapiens-ucsc-hg19-knowngene") -- cgit v1.2.3