From e74bcbc64fc32db22985723e9caa4f0b0bbb38d1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 21 Nov 2021 09:04:16 +0100 Subject: gnu: python-scanpy: Set PYTHONPATH variable. This is a follow-up to commit 664721422cd17c151df00b9ecab268d1aa18e3b3. * gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Set PYTHONPATH variable during the build as GUIX_PYTHONPATH does not have the intended effect. --- gnu/packages/bioinformatics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3668d0f0af..aef7175b94 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11956,7 +11956,7 @@ implementation differs in these ways: ;; packaged yet. (delete-file "scanpy/tests/external/test_scanorama_integrate.py") - (setenv "GUIX_PYTHONPATH" + (setenv "PYTHONPATH" (string-append (getcwd) ":" (assoc-ref inputs "python-anndata:source") ":" (getenv "GUIX_PYTHONPATH"))) -- cgit v1.2.3