From ca588fdfde849994cc7d399dc9d860ad06332a3e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 9 Mar 2022 11:35:35 +0100 Subject: gnu: Add r-scopeloomr. * gnu/packages/bioinformatics.scm (r-scopeloomr): New variable. --- gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6db75f143f..ada5965e5f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13883,6 +13883,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots are generated using @code{ggplot2}.") (license license:expat))) +(define-public r-scopeloomr + (let ((commit "99726f5f7da794042036b73924b6a10d6e7b4d5d") + (revision "1")) + (package + (name "r-scopeloomr") + (version (git-version "0.13.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aertslab/SCopeLoomR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1ci17ms0c0hf7yfp9ckcg7a2y1s0nm19jj3cifsd55hwc0gdglmz")))) + (properties `((upstream-name . "SCopeLoomR"))) + (build-system r-build-system) + (propagated-inputs + (list r-base64enc r-hdf5r r-igraph r-matrix r-plyr r-rjson r-rlist)) + (home-page "https://github.com/aertslab/SCopeLoomR") + (synopsis "Build .loom files and extract data from them") + (description + "This is an R package to build generic @code{.loom} files aligning with +the default naming convention of the @code{.loom} format and to integrate +other data types e.g.: regulons (SCENIC), clusters from Seurat, trajectory +information... The package can also be used to extract data from @code{.loom} +files.") + (license license:expat)))) + (define-public vbz-compression (package (name "vbz-compression") -- cgit v1.2.3