From c03cefc3d8dd826c4a74abbfe2b235525dca50fb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Jun 2020 13:42:02 +0200 Subject: gnu: Add r-kmer. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-kmer): New variable. Co-authored-by: Mădălin Ionel Patrașcu --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d07d63d429..68af10f36b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22299,3 +22299,27 @@ via Newick parenthetic text. This improves accessibility to the comprehensive range of object-specific analytical and tree-visualization functions found across a wide array of bioinformatic R packages.") (license license:gpl3))) + +(define-public r-kmer + (package + (name "r-kmer") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "kmer" version)) + (sha256 + (base32 "0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww")))) + (properties `((upstream-name . "kmer"))) + (build-system r-build-system) + (propagated-inputs + `(("r-openssl" ,r-openssl) + ("r-phylogram" ,r-phylogram) + ("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/shaunpwilkinson/kmer/") + (synopsis "Fast K-Mer counting and clustering for biological sequence analysis") + (description + "@code{r-kmer} is an R package for rapidly computing distance matrices +and clustering large sequence datasets using fast alignment-free k-mer +counting and recursive k-means partitioning.") + (license license:gpl3))) -- cgit v1.2.3