From 932f795c0e3ef352ff8a9281b99033ea8df60fda Mon Sep 17 00:00:00 2001
From: Rutger Helling <rhelling@mykolab.com>
Date: Tue, 6 Aug 2019 13:04:47 +0200
Subject: gnu: kitty: Update to 0.14.3.

* gnu/packages/terminals.scm (kitty): Update to 0.14.3.
[inputs]: Add libcanberra.
---
 gnu/packages/terminals.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index df8d1e4b79..9077d295db 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -57,6 +57,7 @@
   #:use-module (gnu packages golang)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages image)
+  #:use-module (gnu packages libcanberra)
   #:use-module (gnu packages libevent)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages ncurses)
@@ -954,7 +955,7 @@ tmux.")
 (define-public kitty
   (package
     (name "kitty")
-    (version "0.14.2")
+    (version "0.14.3")
     (home-page "https://sw.kovidgoyal.net/kitty/")
     (source
      (origin
@@ -965,7 +966,7 @@ tmux.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "15iv3k7iryf10n8n67d37x24pzcarq97a3dr42lbld00k1lx19az"))
+         "0wi6b6b1nyp16rcpcghk6by62wy6qsamv1xdymyn0zbqgd8h9n6b"))
        (modules '((guix build utils)))
        (snippet
         '(begin
@@ -984,6 +985,7 @@ tmux.")
      `(("python" ,python)
        ("harfbuzz" ,harfbuzz)
        ("zlib" ,zlib)
+       ("libcanberra" ,libcanberra)
        ("libpng" ,libpng)
        ("freetype" ,freetype)
        ("fontconfig" ,fontconfig)
-- 
cgit v1.2.3


From 49fd98bf657dacc49af663750eaf9fd9721b93ea Mon Sep 17 00:00:00 2001
From: Rutger Helling <rhelling@mykolab.com>
Date: Tue, 6 Aug 2019 13:08:22 +0200
Subject: gnu: faudio: Update to 19.08.

* gnu/packages/audio.scm (faudio): Update to 19.08.
---
 gnu/packages/audio.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index c6c42f66c6..fc0d6f80db 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -3700,7 +3700,7 @@ library.")
 (define-public faudio
   (package
     (name "faudio")
-    (version "19.07")
+    (version "19.08")
     (source
      (origin
        (method git-fetch)
@@ -3709,7 +3709,7 @@ library.")
              (commit version)))
        (file-name (string-append name "-" version "-checkout"))
        (sha256
-        (base32 "1wf6skc5agaikc9qgwk8bx56sad31fafs53lqqn4jmx8i76pl0lw"))))
+        (base32 "1v13kfhyr46241vb6a4dcb4gw5f149525sprwa9cj4rv6wlcqgm5"))))
     (arguments
      '(#:tests? #f                      ; No tests.
        #:configure-flags '("-DFFMPEG=ON")))
-- 
cgit v1.2.3


From 6eccb0879f1e2365d80f7b84dc548510a7e7309c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 12:34:51 +0200
Subject: gnu: r-boot: Update to 1.3-23.

* gnu/packages/statistics.scm (r-boot): Update to 1.3-23.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index eb5e5b4b76..3244fe47f1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -397,14 +397,14 @@ available, greatly increasing its breadth and scope.")
 (define-public r-boot
   (package
     (name "r-boot")
-    (version "1.3-22")
+    (version "1.3-23")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "boot" version))
        (sha256
         (base32
-         "1z2dig1mi76b3b9ck6qlkh07l3hs478gaf70db5nv8x7w2qhq7yg"))))
+         "0bx07zbb5nfz2xfgnzbspg7r5vxz4bjdz1ry4d1vk434vlcrxj1h"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/boot")
     (synopsis "Bootstrap functions for R")
-- 
cgit v1.2.3


From ecebfe51ce55409130c98635464f5b4fb4975924 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:46:34 +0200
Subject: gnu: r-foreign: Update to 0.8-72.

* gnu/packages/statistics.scm (r-foreign): Update to 0.8-72.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 3244fe47f1..0e4e157531 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -502,14 +502,14 @@ code for possible problems.")
 (define-public r-foreign
   (package
     (name "r-foreign")
-    (version "0.8-71")
+    (version "0.8-72")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "foreign" version))
        (sha256
         (base32
-         "1mv04w3ycz0ymsszn8aa87k6k5sb8mg8lhf1b8w4zpfrphpkkliv"))))
+         "124c9229is44p2rv7xyh2q86nsfi7vzyyh5n3c5ihziqrp4ig723"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/foreign")
     (synopsis "Read data stored by other statistics software")
-- 
cgit v1.2.3


From d6e54e70028816f92b98b525f0eaa6a1f355d04e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:46:46 +0200
Subject: gnu: r-nlme: Update to 3.1-141.

* gnu/packages/statistics.scm (r-nlme): Update to 3.1-141.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0e4e157531..1777ad8bc3 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -588,14 +588,14 @@ and operations on them using LAPACK and SuiteSparse.")
 (define-public r-nlme
   (package
     (name "r-nlme")
-    (version "3.1-140")
+    (version "3.1-141")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "nlme" version))
        (sha256
         (base32
-         "0k9x5j34fx093a023da9ny3b3101lbwpmfm27mkvfj950l22z88x"))))
+         "0ml00g79bimjcl0sgn6h55l5b4gfmnsnc1vvmivggn0318k4c04i"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-lattice" ,r-lattice)))
-- 
cgit v1.2.3


From c2e85d02658a3a5e5dd6d296377f382dbe4718d7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:46:55 +0200
Subject: gnu: r-digest: Update to 0.6.20.

* gnu/packages/statistics.scm (r-digest): Update to 0.6.20.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 1777ad8bc3..e86584ad23 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -804,13 +804,13 @@ effects of different types of color-blindness.")
 (define-public r-digest
   (package
     (name "r-digest")
-    (version "0.6.19")
+    (version "0.6.20")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "digest" version))
        (sha256
-        (base32 "1x6cbj9qvkk7pxv9xdqibazw3x8psjp6x0m0ildx1jwyb2ymkl98"))))
+        (base32 "1irhk2jaj9cg57cxprgyn1if06x121xwcxh1fzzn3148bl5lnrq5"))))
     (build-system r-build-system)
     ;; Vignettes require r-knitr, which requires r-digest, so we have to
     ;; disable them and the tests.
-- 
cgit v1.2.3


From eae8e56a64261c8c440b3b981ff976174f0a7634 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:47:04 +0200
Subject: gnu: r-testthat: Update to 2.2.1.

* gnu/packages/statistics.scm (r-testthat): Update to 2.2.1.
[propagated-inputs]: Add r-evaluate.
---
 gnu/packages/statistics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index e86584ad23..907d3c8a36 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1603,18 +1603,19 @@ R packages that praise their users.")
 (define-public r-testthat
   (package
     (name "r-testthat")
-    (version "2.1.1")
+    (version "2.2.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "testthat" version))
               (sha256
                (base32
-                "03jgr0hlr77yp0aib4v30yjyjrjsa8dczr02yk21m93vl25vqvkp"))))
+                "0y0bvggm4pzkzp6xn7b8cf3ybqp9ijxkhhyp3z49a9iipc90bvk7"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cli" ,r-cli)
        ("r-crayon" ,r-crayon)
        ("r-digest" ,r-digest)
+       ("r-evaluate" ,r-evaluate)
        ("r-magrittr" ,r-magrittr)
        ("r-praise" ,r-praise)
        ("r-r6" ,r-r6)
-- 
cgit v1.2.3


From 7d36001bd21579e21158a9403f7387cf70d9e777 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:47:19 +0200
Subject: gnu: r-dplyr: Update to 0.8.3.

* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.3.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 907d3c8a36..2a2130c784 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1697,13 +1697,13 @@ and printing capabilities than traditional data frames.")
 (define-public r-dplyr
   (package
     (name "r-dplyr")
-    (version "0.8.1")
+    (version "0.8.3")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "dplyr" version))
               (sha256
                (base32
-                "1nw12hzk1jcac5879nfmf1yp98jpb3i59qkb8sfpk2cd6zqgfgjz"))))
+                "032c89wa04g9rih9shyvwl3il0bsrv3xk489x6867sk9bb3amd38"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-assertthat" ,r-assertthat)
-- 
cgit v1.2.3


From 8d932e71d634ad043718d635cfad21ba8f3ab014 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:47:26 +0200
Subject: gnu: r-coda: Update to 0.19-3.

* gnu/packages/statistics.scm (r-coda): Update to 0.19-3.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 2a2130c784..57e52f01b4 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1980,13 +1980,13 @@ inference for statistical models.")
 (define-public r-coda
   (package
     (name "r-coda")
-    (version "0.19-2")
+    (version "0.19-3")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "coda" version))
               (sha256
                (base32
-                "03fs3sdrrym3is92dgpa6ydk3m63gaihwy7bva4k0wm2hxm7x2k7"))))
+                "1mn50bshky968gn4nf6vnkaa768fnvm1xmhkms7szwdw9341zpyk"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-lattice" ,r-lattice)))
-- 
cgit v1.2.3


From b29ecb8e378e512244dbd08b35de798df70b5853 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:47:34 +0200
Subject: gnu: r-xml2: Update to 1.2.1.

* gnu/packages/statistics.scm (r-xml2): Update to 1.2.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 57e52f01b4..3f6f45e8e9 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2022,14 +2022,14 @@ and environmental data in the framework of Euclidean exploratory methods.")
 (define-public r-xml2
   (package
     (name "r-xml2")
-    (version "1.2.0")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xml2" version))
        (sha256
         (base32
-         "154lmksfiwkhnlmryas25mjhfg6k4mmnnk7bbb29mnn5x5pr2yha"))))
+         "0186d7r36xw1z9f8ajz35a0dz4ch6hmrjl9536yc7vq78v4vn5an"))))
     (build-system r-build-system)
     (inputs
      `(("libxml2" ,libxml2)
-- 
cgit v1.2.3


From c02bb7e9011f7843948e60893054bdf81892e20e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:47:41 +0200
Subject: gnu: r-checkmate: Update to 1.9.4.

* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.4.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 3f6f45e8e9..5ba9e07c39 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2137,14 +2137,14 @@ R version.")
 (define-public r-checkmate
   (package
     (name "r-checkmate")
-    (version "1.9.3")
+    (version "1.9.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "checkmate" version))
        (sha256
         (base32
-         "15ccwvmw73c2zz1k10k5zdn8px0rrbnvs1b4nzvlb0iwj7cimhp4"))))
+         "08ddpgs4mv5d5y4j054pm8drmxkn7yvhfpbghwxlizjpnxa5g8ps"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-backports" ,r-backports)))
-- 
cgit v1.2.3


From 3511aff9926c39d456711f91b3edbf5c196a7126 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:47:48 +0200
Subject: gnu: r-openssl: Update to 1.4.1.

* gnu/packages/statistics.scm (r-openssl): Update to 1.4.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5ba9e07c39..c625c0a3e8 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2334,14 +2334,14 @@ collation, and NAMESPACE files.")
 (define-public r-openssl
   (package
     (name "r-openssl")
-    (version "1.4")
+    (version "1.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "openssl" version))
        (sha256
         (base32
-         "0mh4xwb9wnn5j2n1zzmjldqjqv2nn4wdidiixxciaqrqsi0l9834"))))
+         "1ihz2qi33lhngl19xdanq0pbmfaacy63794mg8ll7z2lab3yryzp"))))
     (build-system r-build-system)
     (inputs
      `(("libressl" ,libressl)))
-- 
cgit v1.2.3


From 9236b2c1442366a10a2fd09abba7b4afc47aa092 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:47:54 +0200
Subject: gnu: r-httr: Update to 1.4.1.

* gnu/packages/statistics.scm (r-httr): Update to 1.4.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c625c0a3e8..522dbb9e18 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2367,13 +2367,13 @@ integers.")
 (define-public r-httr
   (package
     (name "r-httr")
-    (version "1.4.0")
+    (version "1.4.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "httr" version))
               (sha256
                (base32
-                "0j6vknwyvkjpjsxwch4q02aik4dnm3h4l0wc7dgzc555bm1g2cyn"))))
+                "0mp1il13q6n49n2hv1p2p8x6avjan6dr5az19ql4hb78pc3pwp37"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-curl" ,r-curl)
-- 
cgit v1.2.3


From 1df87085e365b6cf7a3dbd4d1f513c91ecde1162 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:48:04 +0200
Subject: gnu: r-git2r: Update to 0.26.1.

* gnu/packages/statistics.scm (r-git2r): Update to 0.26.1.
[inputs]: Remove libssh2 and openssl; add libgit2.
---
 gnu/packages/statistics.scm | 11 ++++-------
 1 file changed, 4 insertions(+), 7 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 522dbb9e18..7cb0ed9923 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -75,6 +75,7 @@
   #:use-module (gnu packages time)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages version-control)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg)
@@ -2393,20 +2394,16 @@ functions make it easy to control additional request components.")
 (define-public r-git2r
   (package
     (name "r-git2r")
-    (version "0.25.2")
+    (version "0.26.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "git2r" version))
               (sha256
                (base32
-                "15kpvz6ry2r8ii5hzinjwkggc5kgmkbcpsdwzahsf8gha52w80p0"))))
+                "0dbl845sahv2i641ncaf06w06djravwc5wknp9syzx0ad8l0kmhk"))))
     (build-system r-build-system)
-    ;; This R package contains modified sources of libgit2.  This modified
-    ;; version of libgit2 is built as the package is built.  Hence libgit2 is
-    ;; not among the inputs of this package.
     (inputs
-     `(("libssh2" ,libssh2) ; for SSH transport
-       ("openssl" ,openssl)
+     `(("libgit2" ,libgit2)
        ("zlib" ,zlib)))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-- 
cgit v1.2.3


From 78896ba23bb5b74ac2d76e30438b1b78b4638cd4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:48:26 +0200
Subject: gnu: r-devtools: Update to 2.1.0.

* gnu/packages/statistics.scm (r-devtools): Update to 2.1.0.
[propagated-inputs]: Add r-roxygen2 and r-testthat.
---
 gnu/packages/statistics.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7cb0ed9923..75b12dfa06 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2436,13 +2436,13 @@ informative error messages when it's not available.")
 (define-public r-devtools
   (package
     (name "r-devtools")
-    (version "2.0.2")
+    (version "2.1.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "devtools" version))
               (sha256
                (base32
-                "028pppj39ng7q17k27531s8k00lmw982vz5krn74n9b8f2azm8lr"))))
+                "0393v7nr22gr5g9afgrhq4ab3lwbqy6fd3shnmlhdpqam5357xy1"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-callr" ,r-callr)
@@ -2455,9 +2455,11 @@ informative error messages when it's not available.")
        ("r-pkgbuild" ,r-pkgbuild)
        ("r-pkgload" ,r-pkgload)
        ("r-rcmdcheck" ,r-rcmdcheck)
+       ("r-roxygen2" ,r-roxygen2)
        ("r-remotes" ,r-remotes)
        ("r-rstudioapi" ,r-rstudioapi)
        ("r-sessioninfo" ,r-sessioninfo)
+       ("r-testthat" ,r-testthat)
        ("r-usethis" ,r-usethis)
        ("r-withr" ,r-withr)))
     (home-page "https://github.com/hadley/devtools")
-- 
cgit v1.2.3


From 9b02d1c83661cddeb96b125d32ab3750ee1db7a4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:48:53 +0200
Subject: gnu: r-hms: Update to 0.5.0.

* gnu/packages/statistics.scm (r-hms): Update to 0.5.0.
[propagated-inputs]: Add r-vctrs.
---
 gnu/packages/statistics.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 75b12dfa06..63ede82645 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2490,18 +2490,19 @@ were originally a part of the r-devtools package.")
 (define-public r-hms
   (package
     (name "r-hms")
-    (version "0.4.2")
+    (version "0.5.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "hms" version))
        (sha256
         (base32
-         "1g6hslk3z0xga38r71irxq802wskg6nv804mp8y9f7i2wfrj0y55"))))
+         "06snfqdczr0x0nbp7qnvwhlp2pw0wx9c2y3xb4gr1wrvbik74y58"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-rlang" ,r-rlang)
-       ("r-pkgconfig" ,r-pkgconfig)))
+       ("r-pkgconfig" ,r-pkgconfig)
+       ("r-vctrs" ,r-vctrs)))
     (home-page "https://github.com/rstats-db/hms")
     (synopsis "Pretty time of day")
     (description
-- 
cgit v1.2.3


From 6af62ad50aedf950bb6de68fea6c30e309b225e3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:49:21 +0200
Subject: gnu: r-rcpparmadillo: Update to 0.9.600.4.0.

* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.600.4.0.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 63ede82645..fcff731c54 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2598,13 +2598,13 @@ well as additional utilities such as panel and axis annotation functions.")
 (define-public r-rcpparmadillo
   (package
     (name "r-rcpparmadillo")
-    (version "0.9.500.2.0")
+    (version "0.9.600.4.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RcppArmadillo" version))
               (sha256
                (base32
-                "1lyvpb7n54ijlqns29qiixqr39334knf67cnixvlic58945glrhv"))))
+                "07jg2667xyhmp1fbcdi5nnhmkk81da76s9rlswfq4k2sjsmbfmr0"))))
     (properties `((upstream-name . "RcppArmadillo")))
     (build-system r-build-system)
     ;; All needed for vignettes
-- 
cgit v1.2.3


From feb261ee9bbb81cab541a04d08b9f6b09f2d98d6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:49:28 +0200
Subject: gnu: r-rmarkdown: Update to 1.14.

* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.14.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index fcff731c54..ddeb8b31bb 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2696,14 +2696,14 @@ certain criterion, e.g., it contains a certain regular file.")
 (define-public r-rmarkdown
   (package
     (name "r-rmarkdown")
-    (version "1.13")
+    (version "1.14")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "rmarkdown" version))
         (sha256
           (base32
-            "1vv3b8nlw8ra19492rjg3na42lwh3xr5a2jy2ia81fvvs846pywn"))))
+            "0qfw5rkvwqpgix32g6qy9xrr50awmm146aqbm836xravih2b2dpn"))))
     (properties `((upstream-name . "rmarkdown")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 2de0f885f4368201d38cd2b00ad5a890f21bf645 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:49:37 +0200
Subject: gnu: r-blob: Update to 1.2.0.

* gnu/packages/statistics.scm (r-blob): Update to 1.2.0.
[propagated-inputs]: Add r-rlang and r-vctrs; remove r-tibble.
---
 gnu/packages/statistics.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index ddeb8b31bb..388a10c54b 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2789,17 +2789,18 @@ that package, other packages are unaffected.")
 (define-public r-blob
   (package
     (name "r-blob")
-    (version "1.1.1")
+    (version "1.2.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "blob" version))
               (sha256
                (base32
-                "0lsg91hk508dd95ivig2lwg62qafwnarjw68110kx63cfk4zkjxc"))))
+                "08z071jzac4gasgfgab0y5g3ilfmlw08ln813wphxg07hsiczw8s"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-prettyunits" ,r-prettyunits)
-       ("r-tibble" ,r-tibble)))
+       ("r-rlang" ,r-rlang)
+       ("r-vctrs" ,r-vctrs)))
     (home-page "https://github.com/hadley/blob")
     (synopsis "Simple S3 Class for representing vectors of binary data")
     (description "Raw vectors in R are useful for storing a single binary
-- 
cgit v1.2.3


From 90752043ddb7d29ad0a9bab3b91355fc53706944 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:50:15 +0200
Subject: gnu: r-rsqlite: Update to 2.1.2.

* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.2.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 388a10c54b..0943fa4bd8 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2812,13 +2812,13 @@ a column in data frame.")
 (define-public r-rsqlite
   (package
     (name "r-rsqlite")
-    (version "2.1.1")
+    (version "2.1.2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RSQLite" version))
               (sha256
                (base32
-                "1giwk4335sc6yhj3rs8h070g1mwy38kyqyqv6vcfxvskykj7vp6z"))))
+                "1inrhap5cs0wry2jbw42fx9wwxb3qdzlpy0ba4f6a29bs8jx9nk6"))))
     (properties `((upstream-name . "RSQLite")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From b41d03dd35863549bd9ae9fa450786bc979936e0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:50:22 +0200
Subject: gnu: r-iterators: Update to 1.0.12.

* gnu/packages/statistics.scm (r-iterators): Update to 1.0.12.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0943fa4bd8..c5e8f64da5 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3071,14 +3071,14 @@ standard R subsetting and Kronecker products.")
 (define-public r-iterators
   (package
     (name "r-iterators")
-    (version "1.0.10")
+    (version "1.0.12")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "iterators" version))
        (sha256
         (base32
-         "1s3iykfvccpnzs73z90rx18qvbvgw2dgl4nfcrvm5m1850qb5qd9"))))
+         "0jwzxaa3jm1xzgfv5pn0xqkk7rhm0xwvgn85w7xaw8xx1vb33gwn"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/iterators")
     (synopsis "Iterator construct for R")
-- 
cgit v1.2.3


From 5a01128f4523ab14492f905000c55f185aba415d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:50:29 +0200
Subject: gnu: r-foreach: Update to 1.4.7.

* gnu/packages/statistics.scm (r-foreach): Update to 1.4.7.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c5e8f64da5..9133628952 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3091,14 +3091,14 @@ data.")
 (define-public r-foreach
   (package
     (name "r-foreach")
-    (version "1.4.4")
+    (version "1.4.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "foreach" version))
        (sha256
         (base32
-         "0j2yj0rn0d5nbzz9nq5rqqgnxhp9pbd92q4klsarl2xpsn8119y0"))))
+         "0q7iyniw5iri4hl57bhil3r69s5wnaijzn0q0x4h3z42245jqqwm"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-codetools" ,r-codetools)
-- 
cgit v1.2.3


From 862959813f40b1b9d25ffc6cca4f24c66e991f69 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:50:37 +0200
Subject: gnu: r-doparallel: Update to 1.0.15.

* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.15.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 9133628952..259c29b989 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3119,14 +3119,14 @@ parallel.")
 (define-public r-doparallel
   (package
     (name "r-doparallel")
-    (version "1.0.14")
+    (version "1.0.15")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "doParallel" version))
        (sha256
         (base32
-         "01qjs4iw9f1kgymcypj0m2s4pvgqhxaycpli0fb8lq3dc0vpzfyb"))))
+         "0vnqbha3gig3awbfvsfx3ni5jir398md1n7xmsb8jihnjsk7xbbi"))))
     (properties `((upstream-name . "doParallel")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 8d84a0ad70c8d7621fc54630758e80d783289d53 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:50:42 +0200
Subject: gnu: r-domc: Update to 1.3.6.

* gnu/packages/statistics.scm (r-domc): Update to 1.3.6.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 259c29b989..7064935cf3 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3142,14 +3142,14 @@ using the parallel package.")
 (define-public r-domc
   (package
     (name "r-domc")
-    (version "1.3.5")
+    (version "1.3.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "doMC" version))
        (sha256
         (base32
-         "1vfrykvfvsyq12mypd266867ml1dcwc3rj5k9c3wrn5bddcm88kr"))))
+         "1cn9gxavhvjswip8pwvkpi7q6wpzdllcsdjabga8akf55nggqxr9"))))
     (properties `((upstream-name . "doMC")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From b2fea059543c54600c27d877723a1b17243c9039 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:50:47 +0200
Subject: gnu: r-rngtools: Update to 1.4.

* gnu/packages/statistics.scm (r-rngtools): Update to 1.4.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7064935cf3..0428af998f 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3317,14 +3317,14 @@ package registries.")
 (define-public r-rngtools
   (package
     (name "r-rngtools")
-    (version "1.3.1.1")
+    (version "1.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rngtools" version))
        (sha256
         (base32
-         "0k1nlcxggflq0043m15dfclnqnzchkpw2ik7jk82h4dqwvysiqcr"))))
+         "1kivj594bn774lbn29ws2rmzy2km99sza0j3jqvhal6hwmk27a9s"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-digest" ,r-digest)
-- 
cgit v1.2.3


From db93ef0948f2595bf032b6f427808111277acc1a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:50:53 +0200
Subject: gnu: r-cowplot: Update to 1.0.0.

* gnu/packages/statistics.scm (r-cowplot): Update to 1.0.0.
[propagated-inputs]: Remove r-plyr; add r-rlang.
---
 gnu/packages/statistics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0428af998f..b949ac64e2 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4568,19 +4568,19 @@ Farebrother's algorithm or Liu et al.'s algorithm.")
 (define-public r-cowplot
   (package
     (name "r-cowplot")
-    (version "0.9.4")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cowplot" version))
        (sha256
         (base32
-         "0yvalwalvyddyqk0q66y8361nxlh2cvp3ssazax9g5q89lghjmzv"))))
+         "19cqdhgfyr1wj0fz0c5ly8f0aiy9sfgzq6lzb78hkx0hdp2agybh"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
        ("r-gtable" ,r-gtable)
-       ("r-plyr" ,r-plyr)
+       ("r-rlang" ,r-rlang)
        ("r-scales" ,r-scales)))
     (home-page "https://github.com/wilkelab/cowplot")
     (synopsis "Streamlined plot theme and plot annotations for ggplot2")
-- 
cgit v1.2.3


From 58aa971fbdde7740de757eccd33f1313f28ec0b3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:51:12 +0200
Subject: gnu: r-fastica: Update to 1.2-2.

* gnu/packages/statistics.scm (r-fastica): Update to 1.2-2.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index b949ac64e2..2e02500af3 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4642,14 +4642,14 @@ regression.")
 (define-public r-fastica
   (package
     (name "r-fastica")
-    (version "1.2-1")
+    (version "1.2-2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "fastICA" version))
        (sha256
         (base32
-         "108z2ymby5y4h8l4l2krqwm28rya93gq09yylgilnm3afvfrfabg"))))
+         "1zpijqcipm0aa3rxj0mys06lskqy4dbppjpxr1aby0j16y9ka8ij"))))
     (properties `((upstream-name . "fastICA")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/fastICA")
-- 
cgit v1.2.3


From ddfd0afb2a946e7131c213b33e84abb74224b86f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:51:20 +0200
Subject: gnu: r-mclust: Update to 5.4.5.

* gnu/packages/statistics.scm (r-mclust): Update to 5.4.5.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 2e02500af3..0d896b090d 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4751,14 +4751,14 @@ models, generalized linear models and model-based clustering.")
 (define-public r-mclust
   (package
     (name "r-mclust")
-    (version "5.4.4")
+    (version "5.4.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "mclust" version))
        (sha256
         (base32
-         "039ymr57bq5327gypizw0v2qb81j6bkqhjdh8yj23qa5sh51phyc"))))
+         "0whandnda1fnjn5k3hgxdbp3b0xr7nlzy1j37saqb536h8q9dwkm"))))
     (build-system r-build-system)
     (native-inputs
      `(("gfortran" ,gfortran)))
-- 
cgit v1.2.3


From 0910ff0cfcdd111d49584f84b52a61b74bb26f9e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:51:25 +0200
Subject: gnu: r-robust: Update to 0.4-18.1.

* gnu/packages/statistics.scm (r-robust): Update to 0.4-18.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0d896b090d..c7ceb2d813 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4921,14 +4921,14 @@ generally.")
 (define-public r-robust
   (package
     (name "r-robust")
-    (version "0.4-18")
+    (version "0.4-18.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "robust" version))
        (sha256
         (base32
-         "1b7qh1aff500nd6dh4y2ipmjgdiq8991shflb63pc39vpc0ny6g4"))))
+         "0xs098pfw5zdcdk3rsxkylfl6d2pyp566s5v92bzhgl7h8c90cfy"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-fit-models" ,r-fit-models)
-- 
cgit v1.2.3


From 599fbee5fbfce4e874630fcc850b96ee806f66d5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:51:30 +0200
Subject: gnu: r-pbapply: Update to 1.4-1.

* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c7ceb2d813..92b9f05bb5 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5027,14 +5027,14 @@ VGLMs can be loosely thought of as multivariate generalised linear models.")
 (define-public r-pbapply
   (package
     (name "r-pbapply")
-    (version "1.4-0")
+    (version "1.4-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pbapply" version))
        (sha256
         (base32
-         "0bn7a9ni36xy5acnrl9ky3gd1k8jr5kxgazzh3pzd1q6bri1nx7k"))))
+         "1bbws9n90cqnnp5k58hp852jwmm6513jnhn4vzhl9f8x314k6qxk"))))
     (build-system r-build-system)
     (home-page "https://github.com/psolymos/pbapply")
     (synopsis "Adding progress bar to apply functions")
-- 
cgit v1.2.3


From 17e43c425dfe8c9d03e40ad19fccf50b8eebe795 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 13:51:34 +0200
Subject: gnu: r-quantreg: Update to 5.42.1.

* gnu/packages/statistics.scm (r-quantreg): Update to 5.42.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 92b9f05bb5..67c48623bf 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5140,14 +5140,14 @@ using modular prediction and response module classes.")
 (define-public r-quantreg
   (package
     (name "r-quantreg")
-    (version "5.41")
+    (version "5.42.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "quantreg" version))
        (sha256
         (base32
-         "110ax3ngn6i94h7iw7ha67kfsmj94hycp7lk62nmyvkp34vpfykh"))))
+         "1aycnghci329yqw63kybv7sfjjx5whq3xs7xzic4wsaj7j4b1hjc"))))
     (build-system r-build-system)
     (native-inputs
      `(("gfortran" ,gfortran)))
-- 
cgit v1.2.3


From d36430d274028c5d9b66240efa8b5db0e767a729 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:09:23 +0200
Subject: gnu: r-desolve: Update to 1.24.

* gnu/packages/maths.scm (r-desolve): Update to 1.24.
---
 gnu/packages/maths.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index b204b314c6..e3c7d9ce91 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -4333,14 +4333,14 @@ are noisy or are discontinuous at the solution.")
 (define-public r-desolve
   (package
     (name "r-desolve")
-    (version "1.21")
+    (version "1.24")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "deSolve" version))
         (sha256
          (base32
-          "0qqc4mknw1jblzcmph1dg3k1p6w42yal0k1xjh8pqk7yb3a75hs5"))))
+          "0hkvspq0fp8j64l9zayab2l2nazazhwfgfym0jllh0xv5a12r99s"))))
     (properties `((upstream-name . "deSolve")))
     (build-system r-build-system)
     (native-inputs
-- 
cgit v1.2.3


From 710ecc9ceb9f246c585b8e99528e9c1cb1db0ef3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:40:02 +0200
Subject: gnu: r-clipr: Update to 0.7.0.

* gnu/packages/cran.scm (r-clipr): Update to 0.7.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3bd0d664da..a2a3574b85 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -78,14 +78,14 @@
 (define-public r-clipr
   (package
     (name "r-clipr")
-    (version "0.6.0")
+    (version "0.7.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "clipr" version))
        (sha256
         (base32
-         "0k9kimkmmj9k7290sxiqn4kd1vvm4w7q9a44wp0w30b7yjpavx2m"))))
+         "1qn2p13d0c1bpqss6mv9hk60980rzhznfqpyaf5x0fy65svy9903"))))
     (build-system r-build-system)
     (home-page "https://github.com/mdlincoln/clipr")
     (synopsis "Read and write from the system clipboard")
-- 
cgit v1.2.3


From 6a04f25fafab8f976eb83e5daf201de75b74a65e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:40:13 +0200
Subject: gnu: r-ellipsis: Update to 0.2.0.1.

* gnu/packages/cran.scm (r-ellipsis): Update to 0.2.0.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a2a3574b85..cb516a8941 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -97,14 +97,14 @@ the system clipboards.")
 (define-public r-ellipsis
   (package
     (name "r-ellipsis")
-    (version "0.2.0")
+    (version "0.2.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ellipsis" version))
        (sha256
         (base32
-         "0hdk79q4wn5nq52p8qd65kqz81l0b8gfzsbzyvmfais0p24qclib"))))
+         "0hx9l043433bwm1np9sypph77c7y9dddpz0wrhbkcv01x32jhr8f"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-rlang" ,r-rlang)))
-- 
cgit v1.2.3


From 3e0128ec36415149a3f51c1e0a6af62a137c25aa Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:40:21 +0200
Subject: gnu: r-callr: Update to 3.3.1.

* gnu/packages/cran.scm (r-callr): Update to 3.3.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index cb516a8941..c00399f347 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -370,14 +370,14 @@ such as copy/paste from an R session.")
 (define-public r-callr
   (package
     (name "r-callr")
-    (version "3.2.0")
+    (version "3.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "callr" version))
        (sha256
         (base32
-         "1s5h2k7c1vgbry90xczin66q89cbkc6mvh4679l5rsz83087pd2b"))))
+         "0rvrlg86fxr5nadvqa0dr1iifqjs4d1rc32v76m3ccvx6m3xlq5z"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-r6" ,r-r6)
-- 
cgit v1.2.3


From b44c12057be97134324e2ad6dc1384745e2df0bf Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:40:28 +0200
Subject: gnu: r-curl: Update to 4.0.

* gnu/packages/cran.scm (r-curl): Update to 4.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c00399f347..25b1dc013b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -614,13 +614,13 @@ LaTeX.")
 (define-public r-curl
   (package
     (name "r-curl")
-    (version "3.3")
+    (version "4.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "curl" version))
               (sha256
                (base32
-                "1gd5i25anzi28lg1f8p7g63z9d46xi0qaw4lxpml5p0f52lvkc0c"))))
+                "0wb1j87fa2nd4a9x1w2nmc453nzvx6qiq8dviwc4jr36hsf9ra89"))))
     (build-system r-build-system)
     (arguments
      `(#:phases
-- 
cgit v1.2.3


From b89805fe14308525a3c0f0619822912c3d8e44ad Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:40:36 +0200
Subject: gnu: r-haven: Update to 2.1.1.

* gnu/packages/cran.scm (r-haven): Update to 2.1.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 25b1dc013b..d2748c7dec 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1205,14 +1205,14 @@ including functions for geolocation and routing.")
 (define-public r-haven
   (package
     (name "r-haven")
-    (version "2.1.0")
+    (version "2.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "haven" version))
        (sha256
         (base32
-         "0x5fwc4q2gdxwwp5sxdd6q17jhpisd769y9kv0xgnjcm0cdwz8f0"))))
+         "12h64r2v2451igyl7v4w2kg0hzw9rnanph0m7smffq29ybkv9g4h"))))
     (build-system r-build-system)
     (inputs
      `(("zlib" ,zlib)))
-- 
cgit v1.2.3


From cd7e9fb1619260ae2517bfbfc44a3e392332a17b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:40:44 +0200
Subject: gnu: r-pkgbuild: Update to 1.0.4.

* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d2748c7dec..bd9c9c76ce 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1441,14 +1441,14 @@ processes.  Most of its code is based on the @code{psutil} Python package.")
 (define-public r-pkgbuild
   (package
     (name "r-pkgbuild")
-    (version "1.0.3")
+    (version "1.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pkgbuild" version))
        (sha256
         (base32
-         "0k8zwa66rm1ncx19ld5mbaxcjxkswiczpdqyssy44vl8k6scwfn9"))))
+         "0prvx91dha5pvd0k4jca2arkngvi6vnfs2indmiy3kwwzyjyyd19"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-callr" ,r-callr)
-- 
cgit v1.2.3


From 4522ec869b8df298158d4d295a102e74fa5fbc2f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:40:52 +0200
Subject: gnu: r-rcpp: Update to 1.0.2.

* gnu/packages/cran.scm (r-rcpp): Update to 1.0.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bd9c9c76ce..6a21c38df6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1497,13 +1497,13 @@ you to rapidly iterate while developing a package.")
 (define-public r-rcpp
   (package
     (name "r-rcpp")
-    (version "1.0.1")
+    (version "1.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Rcpp" version))
        (sha256
-        (base32 "015rmxns8mhmnd9wnz9bmma4iwx2sf4bcwkkp9hcgvdmblzf0vg7"))))
+        (base32 "170jlmjrs92z5qdv58badhxycjvfjpqwwpic7rm13pc9zkb3i4xd"))))
     (build-system r-build-system)
     (native-inputs
      `(("r-knitr" ,r-knitr))) ; for vignettes
-- 
cgit v1.2.3


From 80cdd36fe8a523953a10e7a8ee9a9d9b2e8a3896 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:41:01 +0200
Subject: gnu: r-lpsolve: Update to 5.6.13.2.

* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6a21c38df6..1872167898 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2230,14 +2230,14 @@ topics for ecologists (ISBN 978-0-691-12522-0).")
 (define-public r-lpsolve
   (package
     (name "r-lpsolve")
-    (version "5.6.13.1")
+    (version "5.6.13.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lpSolve" version))
        (sha256
         (base32
-         "1f10ywlaaldgjj84vs108ly0nsbkrdgbn5d6qj7nk93j1x1xrn3a"))))
+         "0fc5m259ayc880f5hvnq59ih6nb2rlp394n756n1khmxbjpw1w3m"))))
     (properties `((upstream-name . "lpSolve")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/lpSolve")
-- 
cgit v1.2.3


From 3337fd1dce0a010cc0f93ea4afe0ee512a9428ca Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:41:08 +0200
Subject: gnu: r-energy: Update to 1.7-6.

* gnu/packages/cran.scm (r-energy): Update to 1.7-6.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1872167898..6eec9966b4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2315,14 +2315,14 @@ data).  Weighted versions of MLE, MME and QME are available.")
 (define-public r-energy
   (package
     (name "r-energy")
-    (version "1.7-5")
+    (version "1.7-6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "energy" version))
        (sha256
         (base32
-         "15k9dg0a82cs9ypm0wpcsff3il1hzhnnv86dv5ngby1r144czhi4"))))
+         "16m8bxfgr9sdisjy2qrv6fv5xxwcc9q890l0hpbwq6qzisrdn3lh"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-boot" ,r-boot)
-- 
cgit v1.2.3


From 099b7c55bbfa079a9ac2b6f86574df115e852073 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:41:17 +0200
Subject: gnu: r-lava: Update to 1.6.6.

* gnu/packages/cran.scm (r-lava): Update to 1.6.6.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6eec9966b4..085c41d0c4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2450,14 +2450,14 @@ available in a vignette.")
 (define-public r-lava
   (package
     (name "r-lava")
-    (version "1.6.5")
+    (version "1.6.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lava" version))
        (sha256
         (base32
-         "13rlqdg42ylnz4hc932bl50xismrcr4d9ykcd9zs19cw5mckjx0f"))))
+         "0nfab5fgnmxh8cplg8rd8cp34fny5j0k5wn4baj51r6ck7fq9g3s"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-numderiv" ,r-numderiv)
-- 
cgit v1.2.3


From f3640cee103c9e86c8ff38ed3f303159e1c5da2d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:41:25 +0200
Subject: gnu: Add r-linprog.

* gnu/packages/cran.scm (r-linprog): New variable.
---
 gnu/packages/cran.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 085c41d0c4..9d3dddc11f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2640,6 +2640,26 @@ to access PostgreSQL database systems.")
     ;; under the PostgreSQL license.
     (license license:gpl2)))
 
+(define-public r-linprog
+  (package
+    (name "r-linprog")
+    (version "0.9-2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "linprog" version))
+       (sha256
+        (base32
+         "1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"))))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-lpsolve" ,r-lpsolve)))
+    (home-page "http://linprog.r-forge.r-project.org/")
+    (synopsis "Linear programming and optimization")
+    (description
+     "This package can be used to solve Linear Programming / Linear
+Optimization problems by using the simplex algorithm.")
+    (license license:gpl2+)))
+
 (define-public r-geometry
   (package
     (name "r-geometry")
-- 
cgit v1.2.3


From a80620b96d248ccc0204de03964afdf5b60f4c54 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:41:32 +0200
Subject: gnu: r-geometry: Update to 0.4.2.

* gnu/packages/cran.scm (r-geometry): Update to 0.4.2.
[propagated-inputs]: Add r-linprog.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9d3dddc11f..82e8ab4349 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2663,17 +2663,18 @@ Optimization problems by using the simplex algorithm.")
 (define-public r-geometry
   (package
     (name "r-geometry")
-    (version "0.4.1")
+    (version "0.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "geometry" version))
        (sha256
         (base32
-         "0v3ivaw8vbjyxg08dd573qk3kqfyknj5hli9503dza6p6xz0dzmm"))))
+         "0vq334115qi039vy198ggv1dsp6n1s6jwcm9ivipf5r8lbm287zz"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-magic" ,r-magic)
+       ("r-linprog" ,r-linprog)
        ("r-lpsolve" ,r-lpsolve)
        ("r-rcpp" ,r-rcpp)
        ("r-rcppprogress" ,r-rcppprogress)))
-- 
cgit v1.2.3


From 417f7ed58dd4ab9dd7d259f76b29f04d79133e71 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:41:51 +0200
Subject: gnu: r-recipes: Update to 0.1.6.

* gnu/packages/cran.scm (r-recipes): Update to 0.1.6.
[propagated-inputs]: Remove r-rcpproll.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 82e8ab4349..99a44b00d7 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2892,14 +2892,14 @@ provides a one-row summary of model-level statistics.")
 (define-public r-recipes
   (package
     (name "r-recipes")
-    (version "0.1.5")
+    (version "0.1.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "recipes" version))
        (sha256
         (base32
-         "056zv4vhayyy8q9izcdknbb9hff2gxivg21g5mkssia78vw8g3mg"))))
+         "1ndz9h0zvdj141r63l8047wbhaj0x8fwzzyq7b8mh78pvrrdpq2i"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-dplyr" ,r-dplyr)
@@ -2911,7 +2911,6 @@ provides a one-row summary of model-level statistics.")
        ("r-magrittr" ,r-magrittr)
        ("r-matrix" ,r-matrix)
        ("r-purrr" ,r-purrr)
-       ("r-rcpproll" ,r-rcpproll)
        ("r-rlang" ,r-rlang)
        ("r-tibble" ,r-tibble)
        ("r-tidyr" ,r-tidyr)
-- 
cgit v1.2.3


From bed3424619ba59bce9f89c997f99e9f7aef2cb26 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:42:12 +0200
Subject: gnu: r-jomo: Update to 2.6-9.

* gnu/packages/cran.scm (r-jomo): Update to 2.6-9.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 99a44b00d7..926537c3d0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3076,14 +3076,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.")
 (define-public r-jomo
   (package
     (name "r-jomo")
-    (version "2.6-8")
+    (version "2.6-9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "jomo" version))
        (sha256
         (base32
-         "097zfdcqc3a45ay8xxbraqh8xsfyivskkdmc2b4ca4n979lx8vyb"))))
+         "16ychdhhv8cii8zrdfdf5gzgnvmfaq573bmi00xqdf323q3lf3xr"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-lme4" ,r-lme4)
-- 
cgit v1.2.3


From 04d42a9de10816b87f5330891527387066f94c2a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:42:21 +0200
Subject: gnu: r-mice: Update to 3.6.0.

* gnu/packages/cran.scm (r-mice): Update to 3.6.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 926537c3d0..518570d348 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3149,14 +3149,14 @@ analysis of multiply imputed data sets.")
 (define-public r-mice
   (package
     (name "r-mice")
-    (version "3.5.0")
+    (version "3.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "mice" version))
        (sha256
         (base32
-         "0icydc312sbvzbp0r0mhs2r77a2ly2xvz5w5amirz3wdkvgyrk2g"))))
+         "0pgcxdmp77604h6f4x8hhs6j4xdjgf5b9zvnixyzdj8vcgdjpivv"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-broom" ,r-broom)
-- 
cgit v1.2.3


From 83e3e72a306b5ec155b8a6494d48f15349cdbbad Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:42:29 +0200
Subject: gnu: r-hardyweinberg: Update to 1.6.3.

* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 518570d348..1c723b561a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3232,14 +3232,14 @@ programming} (SQP) based solver).")
 (define-public r-hardyweinberg
   (package
     (name "r-hardyweinberg")
-    (version "1.6.2")
+    (version "1.6.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "HardyWeinberg" version))
        (sha256
         (base32
-         "15i7b444hikkfgqmx2ki827998xwra38k9v7a7kavwz6zmq5mmv9"))))
+         "1irz44q6nf95h37av868f47aakwv3jgwgw217xfsfw0afkm7s25f"))))
     (properties `((upstream-name . "HardyWeinberg")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 70980197aaf873de24f3679ac62360a973642093 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:42:36 +0200
Subject: gnu: r-vioplot: Update to 0.3.2.

* gnu/packages/cran.scm (r-vioplot): Update to 0.3.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1c723b561a..ddc0526213 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3309,14 +3309,14 @@ structure.")
 (define-public r-vioplot
   (package
     (name "r-vioplot")
-    (version "0.3.0")
+    (version "0.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "vioplot" version))
        (sha256
         (base32
-         "1ddmmqq7qrnvr5q518afnysrl7ccr8am9njknv3dpwaqzcdr9akn"))))
+         "13kfjp747bnzksai8j39y2hyl3ljc6n53c2cfhaw78q3d63x0lbv"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-sm" ,r-sm)
-- 
cgit v1.2.3


From 503d5b5a75d6f5e9ecc597eff1047b1dd03b3432 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:42:43 +0200
Subject: gnu: r-processx: Update to 3.4.1.

* gnu/packages/cran.scm (r-processx): Update to 3.4.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ddc0526213..d3cbb3ecca 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3651,14 +3651,14 @@ constants, and control debugging of packages via environment variables.")
 (define-public r-processx
   (package
     (name "r-processx")
-    (version "3.3.1")
+    (version "3.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "processx" version))
        (sha256
         (base32
-         "1bhbfacx2z2d97pz5bch45nvbvywhx2zp049czlfbdivkzgxn8v1"))))
+         "1g6ipcaxg9y94lyrnbp7kkbqfkcdh1fyrqjjclbjp3x7iysdvazi"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ps" ,r-ps)
-- 
cgit v1.2.3


From 56444d1852016f2049ffa23dd4be4c22f0b513f4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:42:49 +0200
Subject: gnu: r-vctrs: Update to 0.2.0.

* gnu/packages/cran.scm (r-vctrs): Update to 0.2.0.
[propagated-inputs]: Add r-ellipsis.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d3cbb3ecca..bb67c31b9a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3859,18 +3859,19 @@ to variables on the left-hand side of the assignment.")
 (define-public r-vctrs
   (package
     (name "r-vctrs")
-    (version "0.1.0")
+    (version "0.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "vctrs" version))
        (sha256
         (base32
-         "13w1r8zpalirpfaz5sykpn0mj4jmhxi2qkdcfq081ixlfjyzwa6c"))))
+         "05h0y8qzwc899qj84gkhg4jwzscd065as00d4d8smv42h4i8zkjv"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-backports" ,r-backports)
        ("r-digest" ,r-digest)
+       ("r-ellipsis" ,r-ellipsis)
        ("r-glue" ,r-glue)
        ("r-rlang" ,r-rlang)
        ("r-zeallot" ,r-zeallot)))
-- 
cgit v1.2.3


From 9f8f2d9b14dc1b9990e7eb3206db4e692367421e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:02 +0200
Subject: gnu: r-pillar: Update to 1.4.2.

* gnu/packages/cran.scm (r-pillar): Update to 1.4.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bb67c31b9a..0146291626 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3898,14 +3898,14 @@ to variables on the left-hand side of the assignment.")
 (define-public r-pillar
   (package
     (name "r-pillar")
-    (version "1.4.1")
+    (version "1.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pillar" version))
        (sha256
         (base32
-         "0mcc09caxm69pghhz6b8vawj9ni63aijv5qba53pg4ph7rxclwgm"))))
+         "0988047mf0xdhdkqqmavzx4ifjhndjnxniyrrhrdq1nvnrvbpfms"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cli" ,r-cli)
-- 
cgit v1.2.3


From dbd3950a3f5dbe70b0fe6c379aa2a9921fdf975c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:09 +0200
Subject: gnu: r-shinyace: Update to 0.4.0.

* gnu/packages/cran.scm (r-shinyace): Update to 0.4.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0146291626..03643534a6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4649,14 +4649,14 @@ files.")
 (define-public r-shinyace
   (package
     (name "r-shinyace")
-    (version "0.3.3")
+    (version "0.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "shinyAce" version))
        (sha256
         (base32
-         "02q6wqw349nlyf3mbf18cxif1xv9cal5qzccrdlnv73szqn9jk7j"))))
+         "0hvih5g0pswlnz5rf3blx5yqw11ssxvm8w4klxddp1ap20ncbgl1"))))
     (properties `((upstream-name . "shinyAce")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 9c69d7974427b3ffba75c08dcf71b1c59bda0202 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:18 +0200
Subject: gnu: r-radiant-data: Update to 1.0.0.

* gnu/packages/cran.scm (r-radiant-data): Update to 1.0.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 03643534a6..a6081185cd 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4699,14 +4699,14 @@ systems.")
 (define-public r-radiant-data
   (package
     (name "r-radiant-data")
-    (version "0.9.9")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "radiant.data" version))
        (sha256
         (base32
-         "17mgm0sggh4f7ihqmj9m3996p3pqc7h2cwx6ll1ha3kg5mx0znyn"))
+         "0b35jn4mcj10hqra18l8pi6s4pvj6fxipslbn6hkr4zza1z27gzw"))
        (modules '((guix build utils)))
        (snippet
         '(begin
-- 
cgit v1.2.3


From cc7176cc2cb1d4e0daf2c1568b9fa8490a7d7e3f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:24 +0200
Subject: gnu: r-zip: Update to 2.0.3.

* gnu/packages/cran.scm (r-zip): Update to 2.0.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a6081185cd..7283a0527d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5161,14 +5161,14 @@ misclassification probabilities of different models.")
 (define-public r-zip
   (package
     (name "r-zip")
-    (version "2.0.2")
+    (version "2.0.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "zip" version))
        (sha256
         (base32
-         "1xvgs7mhxi0sdp5ix4nisqm9lf8f75b7ip7b1hqpq9bzh0x6z8ix"))))
+         "0zii05jg9v9ljd0wd67g9x4bhlmpmsy5dzd093sbnc5n3vjbi32a"))))
     (build-system r-build-system)
     (home-page "https://github.com/gaborcsardi/zip")
     (synopsis "Cross-platform Zip compression")
-- 
cgit v1.2.3


From e3abc134e8108ac4e68ab3ea848d6a317ec423c3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:32 +0200
Subject: gnu: r-dosnow: Update to 1.0.18.

* gnu/packages/cran.scm (r-dosnow): Update to 1.0.18.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7283a0527d..69325569e8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5319,14 +5319,14 @@ promises, but with a syntax that is idiomatic R.")
 (define-public r-dosnow
   (package
     (name "r-dosnow")
-    (version "1.0.16")
+    (version "1.0.18")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "doSNOW" version))
        (sha256
         (base32
-         "13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n"))))
+         "0rj72z5505cprh6wykhhiz08l9bmd966srqh2qypwivf321bvrvh"))))
     (properties `((upstream-name . "doSNOW")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 2d363778d46e4c9123801217110462febe4e963b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:39 +0200
Subject: gnu: r-reticulate: Update to 1.13.

* gnu/packages/cran.scm (r-reticulate): Update to 1.13.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 69325569e8..7a77f585ab 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5452,14 +5452,14 @@ obtain a better initial configuration in non-metric MDS.")
 (define-public r-reticulate
   (package
     (name "r-reticulate")
-    (version "1.12")
+    (version "1.13")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "reticulate" version))
        (sha256
         (base32
-         "0pqr1rcs8yg9nlh729mvlws93cqhpmv49j9bcgarh7vxzkwyv0kb"))))
+         "1qwxh7zq9igl7dxl5g5qjbvv0mlac3w80djnkm0w8rxnaval3gmd"))))
     (build-system r-build-system)
     (inputs `(("python" ,python)))
     (propagated-inputs
-- 
cgit v1.2.3


From c187e8f65ddc99fea24740b1bdf7d7440566a995 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:45 +0200
Subject: gnu: r-factominer: Update to 1.42.

* gnu/packages/cran.scm (r-factominer): Update to 1.42.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7a77f585ab..50a33f4b5b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5649,14 +5649,14 @@ clustering.")
 (define-public r-factominer
   (package
     (name "r-factominer")
-    (version "1.41")
+    (version "1.42")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "FactoMineR" version))
        (sha256
         (base32
-         "1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"))))
+         "1yl16inb2m89l1czgaf0pgy9655dpr751hyx92yw6rqpd2ryznac"))))
     (properties `((upstream-name . "FactoMineR")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 72c967e2eaaf964fa2dc597ab1f9cce425273d08 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:43:54 +0200
Subject: gnu: r-abn: Update to 2.1.

* gnu/packages/cran.scm (r-abn): Update to 2.1.
[propagated-inputs]: Remove r-cairo.
---
 gnu/packages/cran.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 50a33f4b5b..48120d373e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5939,20 +5939,19 @@ to help insert or delete content at a specific location in the document.")
 (define-public r-abn
   (package
     (name "r-abn")
-    (version "1.3")
+    (version "2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "abn" version))
        (sha256
         (base32
-         "1q9hzpxwg835711kxwygd0l2awal6f015f8s6fprwz7graz1wbbm"))))
+         "08jlvb6i5f7ry2dwm0jgrnn2w95vr0l67dpx13n9878lz9ld131b"))))
     (build-system r-build-system)
     (inputs
      `(("gsl" ,gsl)))
     (propagated-inputs
-     `(("r-cairo" ,r-cairo)
-       ("r-lme4" ,r-lme4)
+     `(("r-lme4" ,r-lme4)
        ("r-mass" ,r-mass)
        ("r-nnet" ,r-nnet)
        ("r-rcpp" ,r-rcpp)
-- 
cgit v1.2.3


From 44de742e372cce55934fe013c81eb4c2b6da1acc Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:44:15 +0200
Subject: gnu: r-insight: Update to 0.4.1.

* gnu/packages/cran.scm (r-insight): Update to 0.4.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 48120d373e..4cf51f3d17 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6090,14 +6090,14 @@ other add-on packages.")
 (define-public r-insight
   (package
     (name "r-insight")
-    (version "0.3.0")
+    (version "0.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "insight" version))
        (sha256
         (base32
-         "1r288hc01cpyrk3nias30fw783z2vw20qr1k67vr65anh7mwm7vb"))))
+         "1lw1r3mb97z5p9z25jfzlhs0sbnwp6v8kzysf0am01x4m7l3iz82"))))
     (build-system r-build-system)
     (home-page "https://easystats.github.io/insight/")
     (synopsis "Easy access to model information for various model objects")
-- 
cgit v1.2.3


From a510dc60918d8ab117afa61339a4cfd407d344a4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:44:21 +0200
Subject: gnu: r-proc: Update to 1.15.3.

* gnu/packages/cran.scm (r-proc): Update to 1.15.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4cf51f3d17..9de81e5be0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6547,14 +6547,14 @@ containing one or more SNPs that evolved under directional selection.")
 (define-public r-proc
   (package
     (name "r-proc")
-    (version "1.15.0")
+    (version "1.15.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pROC" version))
        (sha256
         (base32
-         "1dxxkwdhxfnj2znq4c5ggrr9m5klh5pmfxg17rz59vr2hfb73m24"))))
+         "1jx8af9p6sxbypqvj1cci7q9sbyaw310inbjxibjcr3acj59h45h"))))
     (properties `((upstream-name . "pROC")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 2634febacd6443ca6b362cddb4e77ac17141bcb6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:44:27 +0200
Subject: gnu: r-raster: Update to 2.9-23.

* gnu/packages/cran.scm (r-raster): Update to 2.9-23.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9de81e5be0..e4c505f8c4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6920,14 +6920,14 @@ used to teach mathematics, statistics, computation and modeling.")
 (define-public r-raster
   (package
     (name "r-raster")
-    (version "2.9-5")
+    (version "2.9-23")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "raster" version))
        (sha256
         (base32
-         "0ljrymsp4zzaxdj1l0mw0a6hi88m5h0h920ixfzrg0szbyxqd0yk"))))
+         "1brqigic8ygr223bp2hgk5qjz3q03r4sfglrv4an0ghy7fgfralh"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-rcpp" ,r-rcpp)
-- 
cgit v1.2.3


From 332c8df6f0560d63c7eb156cc3dcdcac96c19c37 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:44:33 +0200
Subject: gnu: r-magick: Update to 2.1.

* gnu/packages/cran.scm (r-magick): Update to 2.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e4c505f8c4..4ffbc97bc3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7488,14 +7488,14 @@ multiple-imputation datasets.")
 (define-public r-magick
   (package
     (name "r-magick")
-    (version "2.0")
+    (version "2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "magick" version))
        (sha256
         (base32
-         "18y465325mhf48x2jn3jz9khwq1z2aj13wfbdkv8k3hln1sd572m"))))
+         "1pz71maz05gx4ds1wfw0alggc8nn2w75lj12dg1zr72s3kybhkzg"))))
     (build-system r-build-system)
     (inputs
      `(("imagemagick" ,imagemagick)
-- 
cgit v1.2.3


From 5357c59bf3638311b447e45cd7cdbfadf277ffc1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:44:40 +0200
Subject: gnu: r-emmeans: Update to 1.4.

* gnu/packages/cran.scm (r-emmeans): Update to 1.4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4ffbc97bc3..0d15c94ae4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7877,14 +7877,14 @@ Hothorn, Westfall, 2010, CRC Press).")
 (define-public r-emmeans
   (package
     (name "r-emmeans")
-    (version "1.3.5.1")
+    (version "1.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "emmeans" version))
        (sha256
         (base32
-         "0rgzjvmp3yqhwgfg96v17wi8gbafzbrmz134shj2jsf5bsmw6vbj"))))
+         "1ynf9hhbch83k63lwps69ijfch30fk5v0sc418ck264c5vih26dh"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-estimability" ,r-estimability)
-- 
cgit v1.2.3


From 5ae4cbb656c87daac9887554805129f557b72a13 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:44:46 +0200
Subject: gnu: r-performance: Update to 0.3.0.

* gnu/packages/cran.scm (r-performance): Update to 0.3.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0d15c94ae4..def84f201a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8134,14 +8134,14 @@ ROPE percentage and pd).")
 (define-public r-performance
   (package
     (name "r-performance")
-    (version "0.2.0")
+    (version "0.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "performance" version))
        (sha256
         (base32
-         "1pzd6z7i1jxr2xi1shg3d0bxlbpmjl7kpmwgjnfys6syv57znd1z"))))
+         "13j74ffhx950kacs86ixx84nviq9qlwzr7hjnhkmzw2hspjxq99w"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-bayestestr" ,r-bayestestr)
-- 
cgit v1.2.3


From 7343fa8ecbff4c28a29a89a5b87c437177984f45 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:44:51 +0200
Subject: gnu: r-ggeffects: Update to 0.11.0.

* gnu/packages/cran.scm (r-ggeffects): Update to 0.11.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index def84f201a..839d862707 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8161,14 +8161,14 @@ effects models and Bayesian models.")
 (define-public r-ggeffects
   (package
     (name "r-ggeffects")
-    (version "0.10.0")
+    (version "0.11.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggeffects" version))
        (sha256
         (base32
-         "0gmqzjk8k8q6j4q6asv9f3b1fv4qrw5w8xa48ha3y98shzm5np9k"))))
+         "1b0lxa8bljdh6h4lk7pql1lrhjlvh7p5c8qlgb8ac6ay8hb79vmi"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-dplyr" ,r-dplyr)
-- 
cgit v1.2.3


From a5a64814b299ee62ddec87a987c106b144b10d75 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:45:08 +0200
Subject: gnu: r-sjplot: Update to 2.7.0.

* gnu/packages/cran.scm (r-sjplot): Update to 2.7.0.
[propagated-inputs]: Add r-ggrepel.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 839d862707..f2207faa4e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8195,14 +8195,14 @@ results using @code{ggplot2}.")
 (define-public r-sjplot
   (package
     (name "r-sjplot")
-    (version "2.6.3")
+    (version "2.7.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "sjPlot" version))
        (sha256
         (base32
-         "0h1mkmp5mrkbf7y3zh6m4cnm737cpg1m5si0lrmal7j2ixqicwjy"))))
+         "1m0gy991fmxvqry91kkzdkdapyalhrwql25d0hg2a2naxgfw4zpk"))))
     (properties `((upstream-name . "sjPlot")))
     (build-system r-build-system)
     (propagated-inputs
@@ -8212,6 +8212,7 @@ results using @code{ggplot2}.")
        ("r-forcats" ,r-forcats)
        ("r-ggeffects" ,r-ggeffects)
        ("r-ggplot2" ,r-ggplot2)
+       ("r-ggrepel" ,r-ggrepel)
        ("r-glmmtmb" ,r-glmmtmb)
        ("r-insight" ,r-insight)
        ("r-knitr" ,r-knitr)
-- 
cgit v1.2.3


From 99765abb13a24426cba340adbdf8fbda82419e74 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:45:21 +0200
Subject: gnu: r-usethis: Update to 1.5.1.

* gnu/packages/cran.scm (r-usethis): Update to 1.5.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f2207faa4e..89a4d7cd48 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8332,14 +8332,14 @@ terminals that do not support Unicode.")
 (define-public r-usethis
   (package
     (name "r-usethis")
-    (version "1.5.0")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "usethis" version))
        (sha256
         (base32
-         "0pn6ka3726psaqlx573g6nxi90apf0rn5m4k2lz1jr66xdc19sag"))))
+         "07an5wbikilg7cb3q6x5aykw8dfqnjrc3wpfb7gjmy0d9fh20fcy"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-clipr" ,r-clipr)
-- 
cgit v1.2.3


From 65555b1d0809eda38167e07299375ff1831ecf72 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:45:28 +0200
Subject: gnu: r-afex: Update to 0.24-1.

* gnu/packages/cran.scm (r-afex): Update to 0.24-1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 89a4d7cd48..871e971374 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8695,14 +8695,14 @@ analysing multivariate abundance data in community ecology.")
 (define-public r-afex
   (package
     (name "r-afex")
-    (version "0.23-0")
+    (version "0.24-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "afex" version))
        (sha256
         (base32
-         "0yv4s7461swn0116y4wq9v139p1br5rr6hhnq1cmkbvybmwj2vp7"))))
+         "14w7kcwr5hxmjcjmdm5ia9ka3bw1nl18pxlm1vpw62nmvicn3455"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-car" ,r-car)
-- 
cgit v1.2.3


From ef93e90fae5734d9da25701cc479a82a86611a85 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:45:34 +0200
Subject: gnu: r-rgl: Update to 0.100.26.

* gnu/packages/cran.scm (r-rgl): Update to 0.100.26.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 871e971374..130dde767d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8929,14 +8929,14 @@ Bioconductor packages.")
 (define-public r-rgl
   (package
     (name "r-rgl")
-    (version "0.100.24")
+    (version "0.100.26")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rgl" version))
        (sha256
         (base32
-         "0nm3iyvhhmh0zlywkfmrq3vyh8z1l296xxfmcky0ifd2qnysfcqj"))))
+         "0h77akviwjd86j2qyx326xynbmwhypd6ydprzlwqnidd4ckrr271"))))
     (build-system r-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-- 
cgit v1.2.3


From 14148ef1ee0b49dd1ab5e9f1736f96ee2bcb6b3e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:45:42 +0200
Subject: gnu: r-tidytree: Update to 0.2.5.

* gnu/packages/cran.scm (r-tidytree): Update to 0.2.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 130dde767d..f686a9e1a8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9395,14 +9395,14 @@ maps.")
 (define-public r-tidytree
   (package
     (name "r-tidytree")
-    (version "0.2.4")
+    (version "0.2.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tidytree" version))
        (sha256
         (base32
-         "04bznlfs617plv258nmsyq2pywnijcnzy2pbn5b2fgjk2xqkp29w"))))
+         "0vfjv33352dmk9cr2qn0knzg761068rdk6jg32csd9vpmcma8awp"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ape" ,r-ape)
-- 
cgit v1.2.3


From e0f20dce62065e623615e813d60e9e2aa14065e1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:45:53 +0200
Subject: gnu: r-sparsesvd: Update to 0.2.

* gnu/packages/cran.scm (r-sparsesvd): Update to 0.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f686a9e1a8..f238110bd0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9463,14 +9463,14 @@ giving it a description in the specific format.")
 (define-public r-sparsesvd
   (package
     (name "r-sparsesvd")
-    (version "0.1-4")
+    (version "0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "sparsesvd" version))
        (sha256
         (base32
-         "1yf373552wvdnd65r7hfcqa3v29dqn7jd4cn431mqd2acnqjrsam"))))
+         "1xm969fjq3fv1p2sqza2apz8picibj4s2agpwf1sx9nwn3b587qs"))))
     (build-system r-build-system)
     (propagated-inputs `(("r-matrix" ,r-matrix)))
     (home-page "http://tedlab.mit.edu/~dr/SVDLIBC/")
-- 
cgit v1.2.3


From b154b0262032ad1d614da114fed56e5b0820c373 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:46:01 +0200
Subject: gnu: r-flare: Update to 1.6.0.2.

* gnu/packages/cran.scm (r-flare): Update to 1.6.0.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f238110bd0..b9c30e696c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9685,14 +9685,14 @@ diagnostics for controlling type-1 errors are also provided.")
 (define-public r-flare
   (package
     (name "r-flare")
-    (version "1.6.0")
+    (version "1.6.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "flare" version))
        (sha256
         (base32
-         "0ygif9a7a99qwv0b488wymmmncp6f5ww9yz13s4qs6p8yf37x1r1"))))
+         "1ybrsx1djqldw0l5l1iz4pfh6xxb8ckkg1ric7wnsr51wm9ljlh5"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-igraph" ,r-igraph)
-- 
cgit v1.2.3


From 12618b5080d9ffce1f87485c78b0f7869cd7532e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:46:22 +0200
Subject: gnu: r-rnifti: Update to 0.11.1.

* gnu/packages/cran.scm (r-rnifti): Update to 0.11.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b9c30e696c..b1c108333c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9785,14 +9785,14 @@ Touzet and Varre (2007).")
 (define-public r-rnifti
   (package
     (name "r-rnifti")
-    (version "0.11.0")
+    (version "0.11.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "RNifti" version))
        (sha256
         (base32
-         "0zs8ffa6gpi9cygxk7xjin6k3vpvfgb540a506zlk50bf6kc5nlf"))))
+         "0jcgdg5k2swmi57aqj347kfi1fc4nvag7pxdfz61kc0vqqamm0wg"))))
     (properties `((upstream-name . "RNifti")))
     (build-system r-build-system)
     (propagated-inputs `(("r-rcpp" ,r-rcpp)))
-- 
cgit v1.2.3


From 031afc48908411531bacceda1012e79a476ed30a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:46:31 +0200
Subject: gnu: r-shades: Update to 1.4.0.

* gnu/packages/cran.scm (r-shades): Update to 1.4.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b1c108333c..764522e520 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9808,14 +9808,14 @@ used by other packages.")
 (define-public r-shades
   (package
     (name "r-shades")
-    (version "1.3.1")
+    (version "1.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "shades" version))
        (sha256
         (base32
-         "0v0xp9l1zyq4iysmkrbdwk4r1rksjj8p5c1726yrcgyg55mj59nv"))))
+         "1zg95sjhrfvbdlfc387g9p0vnb8nb6agdk1mb3wq3kwkm2da0bqj"))))
     (build-system r-build-system)
     (home-page "https://github.com/jonclayden/shades")
     (synopsis "Simple color manipulation")
-- 
cgit v1.2.3


From 6275418b6fb2428cddf4e1bf7937b246451bcf3c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:46:41 +0200
Subject: gnu: Add r-gargle.

* gnu/packages/cran.scm (r-gargle): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 764522e520..d10c5c3c72 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10164,6 +10164,33 @@ library.")
 and manipulating sets of ontological terms.")
     (license license:gpl2+)))
 
+(define-public r-gargle
+  (package
+    (name "r-gargle")
+    (version "0.3.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "gargle" version))
+       (sha256
+        (base32
+         "0vqgp4w03sdyj0q96gxkybqflzzbaw84zifsbi7pxk5y08fimj2v"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-fs" ,r-fs)
+       ("r-glue" ,r-glue)
+       ("r-httr" ,r-httr)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-rlang" ,r-rlang)
+       ("r-withr" ,r-withr)))
+    (home-page "https://gargle.r-lib.org")
+    (synopsis "Utilities for working with Google APIs")
+    (description
+     "This package provides utilities for working with Google APIs.  This
+includes functions and classes for handling common credential types and for
+preparing, executing, and processing HTTP requests.")
+    (license license:expat)))
+
 (define-public r-bigrquery
   (package
     (name "r-bigrquery")
-- 
cgit v1.2.3


From 504a51369f1424047af83757d165344820b2b110 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:48:29 +0200
Subject: gnu: r-bigrquery: Update to 1.2.0.

* gnu/packages/cran.scm (r-bigrquery): Update to 1.2.0.
[propagated-inputs]: Add r-gargle and r-rlang.
---
 gnu/packages/cran.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d10c5c3c72..19958ce3c0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10194,20 +10194,21 @@ preparing, executing, and processing HTTP requests.")
 (define-public r-bigrquery
   (package
     (name "r-bigrquery")
-    (version "1.1.1")
+    (version "1.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bigrquery" version))
        (sha256
         (base32
-         "1if39xkr231xmjq10fx2g7bgg4jgfd3wzx1p9g3pq4hbf2s6x0is"))))
+         "1ggh2gngr5x0g6y7d55y6kvn94anf7qi1bkc28cjmw61hxjq38fb"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-assertthat" ,r-assertthat)
        ("r-bit64" ,r-bit64)
        ("r-curl" ,r-curl)
        ("r-dbi" ,r-dbi)
+       ("r-gargle" ,r-gargle)
        ("r-glue" ,r-glue)
        ("r-httr" ,r-httr)
        ("r-jsonlite" ,r-jsonlite)
@@ -10215,6 +10216,7 @@ preparing, executing, and processing HTTP requests.")
        ("r-progress" ,r-progress)
        ("r-rapidjsonr" ,r-rapidjsonr)
        ("r-rcpp" ,r-rcpp)
+       ("r-rlang" ,r-rlang)
        ("r-tibble" ,r-tibble)))
     (home-page "https://github.com/rstats-db/bigrquery")
     (synopsis "R interface to Google's BigQuery API")
-- 
cgit v1.2.3


From ffb97e695c7a2a4f80915387cec802acdfa28c0f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:48:47 +0200
Subject: gnu: r-spatialextremes: Update to 2.0-7.2.

* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-7.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 19958ce3c0..7b878b6616 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10774,14 +10774,14 @@ covariance functions for large data sets.")
 (define-public r-spatialextremes
   (package
     (name "r-spatialextremes")
-    (version "2.0-7")
+    (version "2.0-7.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "SpatialExtremes" version))
        (sha256
         (base32
-         "1y0h1pcfqp9ynxsr3yrfbihlwm25ypyb88jmm5k2g7xvm8h9g050"))))
+         "0aqq9ryxi4xsdqjhc1lhb7ai8szs7m2vys6nn0ygps1w3pm4xwj8"))))
     (properties
      `((upstream-name . "SpatialExtremes")))
     (build-system r-build-system)
-- 
cgit v1.2.3


From d5d631b6503ee30d344aaebf817d171fdc0d2560 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:48:52 +0200
Subject: gnu: r-future: Update to 1.14.0.

* gnu/packages/cran.scm (r-future): Update to 1.14.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7b878b6616..dbd70922b8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11227,14 +11227,14 @@ them in distributed compute environments.")
 (define-public r-future
   (package
     (name "r-future")
-    (version "1.13.0")
+    (version "1.14.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "future" version))
        (sha256
         (base32
-         "0h8ng2a6vg4axd5f75xcb3ip9d95zi22fa048dq2bzlnncwlznjz"))))
+         "1jyv2wlmpfqbk3hw269h4xg36na3wh1kd1lxmwdb40bsv4850lqa"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-digest" ,r-digest)
-- 
cgit v1.2.3


From eebd93eb6b0a988dafc6c344bf1fc939f6b347f7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:48:58 +0200
Subject: gnu: r-rsvd: Update to 1.0.2.

* gnu/packages/cran.scm (r-rsvd): Update to 1.0.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index dbd70922b8..702c5da9cb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11287,14 +11287,14 @@ machine or distributed on a compute cluster.")
 (define-public r-rsvd
   (package
     (name "r-rsvd")
-    (version "1.0.1")
+    (version "1.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rsvd" version))
        (sha256
         (base32
-         "1faskhf5j2bj9f971qljsmh182g3rnyilj1wwijz530a6skxidzz"))))
+         "0fia77y5fxnhwkcxlgp98ygb8fdfraky75x80hkf7kvvpwc5rzn8"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-matrix" ,r-matrix)))
-- 
cgit v1.2.3


From 01629c665bbb2728014f34410281ac8fcc0499a7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:05 +0200
Subject: gnu: r-bayesm: Update to 3.1-3.

* gnu/packages/cran.scm (r-bayesm): Update to 3.1-3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 702c5da9cb..c052ce4c0b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11495,14 +11495,14 @@ identifying outliers.")
 (define-public r-bayesm
   (package
     (name "r-bayesm")
-    (version "3.1-1")
+    (version "3.1-3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bayesm" version))
        (sha256
         (base32
-         "0y30cza92s6kgvmxjpr6f5g0qbcck7hslqp89ncprarhxiym2m28"))))
+         "041ach2f2vrqzd5kz17v7wmkjz6z8cjjihpk4qvczm4cr9z85r2i"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-rcpp" ,r-rcpp)
-- 
cgit v1.2.3


From 51c9504ba669d8a53e587d42f41a5d45d3e71b3f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:14 +0200
Subject: gnu: r-lavaan: Update to 0.6-4.

* gnu/packages/cran.scm (r-lavaan): Update to 0.6-4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c052ce4c0b..3e070a787a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11899,14 +11899,14 @@ probabilities from a standard bivariate normal CDF.")
 (define-public r-lavaan
   (package
     (name "r-lavaan")
-    (version "0.6-3")
+    (version "0.6-4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lavaan" version))
        (sha256
         (base32
-         "0hw856kv11zqn6nd4216rh19i6xbnc1rh044r7jvvxkhzgbqkyxz"))))
+         "1zf0sxpms35rhq2syb7r3sshhc8kjvc3pv97dk9x0gf4xl7pck4g"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-mass" ,r-mass)
-- 
cgit v1.2.3


From bd00835630039633e6bd9399a6a4fa9703df9dbe Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:20 +0200
Subject: gnu: r-irkernel: Update to 1.0.2.

* gnu/packages/cran.scm (r-irkernel): Update to 1.0.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3e070a787a..86dcd16b3c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12123,14 +12123,14 @@ running IRkernel session.")
 (define-public r-irkernel
   (package
     (name "r-irkernel")
-    (version "1.0.1")
+    (version "1.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "IRkernel" version))
        (sha256
         (base32
-         "1gij59b068qp7sbn9d0b9ghmnhfks15a9anj7bp26acv0yvdsg3s"))))
+         "040qig675zaxsf81ranmvk293amrswi5098k69wyq0vgqyin6vwp"))))
     (properties `((upstream-name . "IRkernel")))
     (build-system r-build-system)
     (arguments
-- 
cgit v1.2.3


From 8518744ec4ecfc514278410ba416f31a124fe906 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:25 +0200
Subject: gnu: r-rematch2: Update to 2.1.0.

* gnu/packages/cran.scm (r-rematch2): Update to 2.1.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 86dcd16b3c..f17a270ac6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12242,14 +12242,14 @@ R, enabling interactive analysis and visualization of genome-scale data.")
 (define-public r-rematch2
   (package
     (name "r-rematch2")
-    (version "2.0.1")
+    (version "2.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rematch2" version))
        (sha256
         (base32
-         "16k0i5p7fa3qfxv59ijyn638wpz8n4jrkrnilqmh5g9l8f8bn4h6"))))
+         "00cznm6rk33b53w7zybkz7549bnydc66znpi5mb0xd24pmqp0rvq"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-tibble" ,r-tibble)))
-- 
cgit v1.2.3


From 24d439868b876b511206c5d69e6a2e035c7ed8e6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:31 +0200
Subject: gnu: r-classint: Update to 0.4-1.

* gnu/packages/cran.scm (r-classint): Update to 0.4-1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f17a270ac6..073eaa5a99 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12591,14 +12591,14 @@ classes.")
 (define-public r-classint
   (package
     (name "r-classint")
-    (version "0.3-3")
+    (version "0.4-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "classInt" version))
        (sha256
         (base32
-         "0c2z6shlxa928xa20yl956r06lx20mji3mwipdvmj3f4z5g6hgm9"))))
+         "00q1bpgblrldckn1rk166q1b0hgap2sjjyfmfcyh6ydk6y73ziir"))))
     (properties `((upstream-name . "classInt")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 4eed03ea41f53e6be769399cea0534fe05f5064c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:36 +0200
Subject: gnu: r-deldir: Update to 0.1-23.

* gnu/packages/cran.scm (r-deldir): Update to 0.1-23.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 073eaa5a99..de365d73b6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12666,14 +12666,14 @@ sampling.")
 (define-public r-deldir
   (package
     (name "r-deldir")
-    (version "0.1-21")
+    (version "0.1-23")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "deldir" version))
        (sha256
         (base32
-         "03392pl6j8rm3n32xrfkyfx866k1vm5sj87pva70yyiwh70vrnmr"))))
+         "0790dwxb2mz1ffz8gd5vwdr0if2q76dzy3vab5rsykf9kz72n4g0"))))
     (build-system r-build-system)
     (native-inputs `(("gfortran" ,gfortran)))
     (home-page "https://cran.r-project.org/web/packages/deldir")
-- 
cgit v1.2.3


From 2deb1529a271c180d33be4f8384911f360f23303 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:41 +0200
Subject: gnu: r-sf: Update to 0.7-7.

* gnu/packages/cran.scm (r-sf): Update to 0.7-7.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index de365d73b6..6b4f2c1046 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12690,14 +12690,14 @@ tessellation.")
 (define-public r-sf
   (package
     (name "r-sf")
-    (version "0.7-4")
+    (version "0.7-7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "sf" version))
        (sha256
         (base32
-         "0vnyr7xyfcl928kbrb1k8l4fkd0cjrfq486g6gxpvy5j0cc2h4i1"))))
+         "192hw52x1qlif8zyai1kff1wiyr3yl5f7jj1rk3k0nr8das0qy6i"))))
     (build-system r-build-system)
     (inputs
      `(("gdal" ,gdal)
-- 
cgit v1.2.3


From 1a88de187b5aaf61698fcbfe6a1ba499704e0482 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:49:49 +0200
Subject: gnu: r-ldheatmap: Update to 0.99-7.

* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-7.
[propagated-inputs]: Add r-rcpp.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6b4f2c1046..57a73bfd89 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13072,18 +13072,19 @@ inbred lines, F2 intercrosses, and association mapping populations.")
 (define-public r-ldheatmap
   (package
     (name "r-ldheatmap")
-    (version "0.99-5")
+    (version "0.99-7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "LDheatmap" version))
        (sha256
         (base32
-         "0il3g3n3bzv74lz7dlhyiwc2x2417v6yhx2g47pahxdzqa09kf4s"))))
+         "1r0j8bihi5z1x0sgaf7dwzpsw9i0nc1vylvipvc0cia2ka1lr9dc"))))
     (properties `((upstream-name . "LDheatmap")))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-genetics" ,r-genetics)
+       ("r-rcpp" ,r-rcpp)
        ("r-snpstats" ,r-snpstats)))
     (home-page "http://stat.sfu.ca/statgen/research/ldheatmap.html")
     (synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
-- 
cgit v1.2.3


From 22d556a8e175b6b5b179a3964cafccbf2b4df359 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:50:03 +0200
Subject: gnu: r-bookdown: Update to 0.12.

* gnu/packages/cran.scm (r-bookdown): Update to 0.12.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 57a73bfd89..39ee669c6f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13163,13 +13163,13 @@ SELECT or UPDATE queries to an end-point.")
 (define-public r-bookdown
   (package
     (name "r-bookdown")
-    (version "0.11")
+    (version "0.12")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "bookdown" version))
               (sha256
                (base32
-                "0w4fkv5fqiaqgkx44p0s161imf29zir9742126xkz1pl1j25jn1r"))))
+                "1c2v0rpa1rrpbx8yb66sfvrf4gf57f6a8x7ydjqqbkbwhxdlrsrq"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-htmltools" ,r-htmltools)
-- 
cgit v1.2.3


From 006c3dc38656fecde5444fe45b1c4f2ca31f9f4e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:50:08 +0200
Subject: gnu: r-dalex: Update to 0.4.4.

* gnu/packages/cran.scm (r-dalex): Update to 0.4.4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 39ee669c6f..bde26b451e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14613,14 +14613,14 @@ engine (Salmon et al., 2011) as provided by the package @code{sitmo}.")
 (define-public r-dalex
   (package
     (name "r-dalex")
-    (version "0.4")
+    (version "0.4.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "DALEX" version))
        (sha256
         (base32
-         "1mr8lqq8s4aacmh7xdhmkmv8vsjqjczlqlaw27xnsljgj2kgq87a"))))
+         "04i17ni8g595jj8dxdfwr9vsxmdn2kkam90ab68vlwws3ywqjl6r"))))
     (properties `((upstream-name . "DALEX")))
     (build-system r-build-system)
     (propagated-inputs `(("r-ggplot2" ,r-ggplot2)))
-- 
cgit v1.2.3


From 5b87fae3f89f57941ee95001ef1a5d246dab3b3b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:50:14 +0200
Subject: gnu: r-enrichr: Update to 2.0.

* gnu/packages/cran.scm (r-enrichr): Update to 2.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bde26b451e..14419ba81f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14639,14 +14639,14 @@ and model output.")
 (define-public r-enrichr
   (package
     (name "r-enrichr")
-    (version "1.0")
+    (version "2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "enrichR" version))
        (sha256
         (base32
-         "0lfdr45sdyqhvgz8q4qdbk12mpv86d6id665kq6aaslgr8jggfmn"))))
+         "056m6hksfss29fj7zvlk7pbh8g3gq84kjh3240isrsnhp9m1h9iz"))))
     (properties `((upstream-name . "enrichR")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 6fa59876068a614461743f4d00f91e7acb391ebd Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:50:22 +0200
Subject: gnu: r-citr: Update to 0.3.1.

* gnu/packages/cran.scm (r-citr): Update to 0.3.1.
[propagated-inputs]: Remove r-bibtex.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 14419ba81f..882580edc1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14749,18 +14749,17 @@ into R and converted to @code{BibEntry} objects.")
 (define-public r-citr
   (package
     (name "r-citr")
-    (version "0.3.0")
+    (version "0.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "citr" version))
        (sha256
         (base32
-         "0pik6s6xk5768s3kkppw2192dj455py53gsn6k2b7xgg96ircy0g"))))
+         "0p2sg0fl7cppxxmr20qyqzs2469kglmgpsvykynw4qx501as57rc"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-assertthat" ,r-assertthat)
-       ("r-bibtex" ,r-bibtex)
        ("r-curl" ,r-curl)
        ("r-httr" ,r-httr)
        ("r-miniui" ,r-miniui)
-- 
cgit v1.2.3


From 00300de5d051936e8645da4283d25b0c80abaa18 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 14:50:38 +0200
Subject: gnu: r-xgboost: Update to 0.90.0.2.

* gnu/packages/cran.scm (r-xgboost): Update to 0.90.0.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 882580edc1..b6f5ec57ad 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14779,14 +14779,14 @@ the current document.")
 (define-public r-xgboost
   (package
     (name "r-xgboost")
-    (version "0.82.1")
+    (version "0.90.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xgboost" version))
        (sha256
         (base32
-         "0plhx63wcm4syslzmjfv6bdgaqn96fnav048hrj0vxk4dzgfp8sq"))))
+         "1gy9rzg43mjpfis893vf15drmbigfn0481zrzss9ajnmnk0q8194"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-data-table" ,r-data-table)
-- 
cgit v1.2.3


From 8a5f9d3d56b76ef8800ac8b67a5bdcbc4763fb92 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:39:36 +0200
Subject: gnu: r-edger: Update to 3.26.6.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.6.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bcec9cd279..bb08ff89ff 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7458,13 +7458,13 @@ names in their natural, rather than lexicographic, order.")
 (define-public r-edger
   (package
     (name "r-edger")
-    (version "3.26.5")
+    (version "3.26.6")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "edgeR" version))
               (sha256
                (base32
-                "0iba4krz30dx5b0s89n5cfkwn64867s7vmvvfqms9lbcr4kj439m"))))
+                "17vadhamjv4x0l4qqq2p2fi6j2bkllz5zd8dq761vgd5ic23zizm"))))
     (properties `((upstream-name . "edgeR")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From fbd761fe9bb4182a41e02d377723b21afc1abacd Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:39:48 +0200
Subject: gnu: r-limma: Update to 3.40.6.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.6.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bb08ff89ff..604c245375 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7525,13 +7525,13 @@ coding changes and predict coding outcomes.")
 (define-public r-limma
   (package
     (name "r-limma")
-    (version "3.40.2")
+    (version "3.40.6")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "limma" version))
               (sha256
                (base32
-                "1d4ig2b7fa9mwja52isxrwmprfdjdk1mlcf2skhdp51l24z6wbk7"))))
+                "166z8cdh6w90rldqqaar7hyaskwiy4smawjfbn4sn58clv6q3mp8"))))
     (build-system r-build-system)
     (home-page "http://bioinf.wehi.edu.au/limma")
     (synopsis "Package for linear models for microarray and RNA-seq data")
-- 
cgit v1.2.3


From 2ebd2b440daeb356f7088fe67ee2ee271971ee75 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:39:54 +0200
Subject: gnu: r-biomart: Update to 2.40.3.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.3.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 604c245375..580bffe784 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7658,13 +7658,13 @@ annotation data packages using SQLite data storage.")
 (define-public r-biomart
   (package
     (name "r-biomart")
-    (version "2.40.1")
+    (version "2.40.3")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "biomaRt" version))
               (sha256
                (base32
-                "1abl0c4qbhfqf9ixdp74183phm7s8rszrr5ldczm59b8vyng8rhx"))))
+                "022m1r44s00c5k9bmv0lr22lcn662nhc91aazvv0yyysxjamyf60"))))
     (properties
      `((upstream-name . "biomaRt")))
     (build-system r-build-system)
-- 
cgit v1.2.3


From 6f8760d9f8a982282bf0eecedad4e5cf5ae6ca3b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:40:00 +0200
Subject: gnu: r-summarizedexperiment: Update to 1.14.1.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 580bffe784..a91dd12993 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7819,13 +7819,13 @@ array-like objects like @code{DataFrame} objects (typically with Rle columns),
 (define-public r-summarizedexperiment
   (package
     (name "r-summarizedexperiment")
-    (version "1.14.0")
+    (version "1.14.1")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "SummarizedExperiment" version))
               (sha256
                (base32
-                "1ypk63pdml89y81pr41i2zq0fimsaxsa5lgpg6xs5cwikyaq0pci"))))
+                "0bhwgzrdipr0qjzc4j0qspqprx3v1rvshmx4j6506dv43pqlgp3f"))))
     (properties
      `((upstream-name . "SummarizedExperiment")))
     (build-system r-build-system)
-- 
cgit v1.2.3


From e16fe0b50af2df01cafd6a0f6413597e483ae2db Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:40:13 +0200
Subject: gnu: r-rtracklayer: Update to 1.44.2.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a91dd12993..afe72631be 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7883,13 +7883,13 @@ alignments.")
 (define-public r-rtracklayer
   (package
     (name "r-rtracklayer")
-    (version "1.44.0")
+    (version "1.44.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "rtracklayer" version))
               (sha256
                (base32
-                "161gcks9b12993g9k27gf7wfh8lgd8m8rr7x2slgfqqssk0yrmpd"))))
+                "03b4rfsbzjjf5kxcsjv7kq8hrsgcvz9rfzcn2v7fx3nr818pbb8s"))))
     (build-system r-build-system)
     (arguments
      `(#:phases
-- 
cgit v1.2.3


From 76d9b08e1b4677dbcb8fbbb8e607ceb35fe81d80 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:40:31 +0200
Subject: gnu: r-genomicfeatures: Update to 1.36.4.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index afe72631be..4ebd891ad9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7930,13 +7930,13 @@ as well as query and modify the browser state, such as the current viewport.")
 (define-public r-genomicfeatures
   (package
     (name "r-genomicfeatures")
-    (version "1.36.3")
+    (version "1.36.4")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "GenomicFeatures" version))
               (sha256
                (base32
-                "0zkd57i5qjxsravv0gbyckc0wrnqzgxd61ibh3jmhmrccrr9ihn3"))))
+                "0mzqv8pyxx5nwchyx3radym9ws2f9hb50xc9abjsjs4w4pv91j3k"))))
     (properties
      `((upstream-name . "GenomicFeatures")))
     (build-system r-build-system)
-- 
cgit v1.2.3


From afe4be49f1346f11a3ac85884afef4434dafa7e4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:40:38 +0200
Subject: gnu: r-rcas: Update to 1.10.1.

* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4ebd891ad9..3661f9f5c1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8354,13 +8354,13 @@ paired-end data.")
 (define-public r-rcas
   (package
     (name "r-rcas")
-    (version "1.10.0")
+    (version "1.10.1")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "RCAS" version))
               (sha256
                (base32
-                "1h4vf5gzilqbdrd8m9l3zc2m4sca8cir8366a7njgd558k7ld5kl"))))
+                "06z5zmdi34jblw37z6ff8hb6lvvi0chwr37acwqfn8d27ax9lakz"))))
     (properties `((upstream-name . "RCAS")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From c8e141ab02c0f5d4027b8b4d0eb141796d4f0ffc Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:40:46 +0200
Subject: gnu: r-msnid: Update to 1.18.1.

* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3661f9f5c1..956257d7bb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9418,14 +9418,14 @@ of mass spectrometry based proteomics data.")
 (define-public r-msnid
   (package
     (name "r-msnid")
-    (version "1.18.0")
+    (version "1.18.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "MSnID" version))
        (sha256
         (base32
-         "18mp8zacawhfapfwpq8czbswxix2ykvqhwjga54v0a99zg3k87h3"))))
+         "1n49l5mjdz7p4g2nwsbhm1jcj42sv6lsriq77n2imvacsvk0qfmb"))))
     (properties `((upstream-name . "MSnID")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 109b8ad5f9fe097df2088e06170bcff5e5f31ff9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:40:55 +0200
Subject: gnu: r-chippeakanno: Update to 3.18.2.

* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 74af02a47d..77c565731e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1212,14 +1212,14 @@ determining dependencies between variables, code improvement suggestions.")
 (define-public r-chippeakanno
   (package
     (name "r-chippeakanno")
-    (version "3.18.1")
+    (version "3.18.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ChIPpeakAnno" version))
        (sha256
         (base32
-         "1mwi5s600c3jxy8f1azfrndc3g06qvhbmrp9wqac9nwjbfx1kfji"))))
+         "0wzwdxvvr7wknz5jnan0wsp81c1gv4d2qx0mrb1yybqf4z068779"))))
     (properties `((upstream-name . "ChIPpeakAnno")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From fcbd8960c2a9187dfff3a02082b7ee137ac3bac6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:41:10 +0200
Subject: gnu: r-genomicinteractions: Update to 1.18.1.

* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 77c565731e..73991f42c5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1521,14 +1521,14 @@ experiments.")
 (define-public r-genomicinteractions
   (package
     (name "r-genomicinteractions")
-    (version "1.18.0")
+    (version "1.18.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "GenomicInteractions" version))
        (sha256
         (base32
-         "0ipvm3c1cqd46n60lsrqzf6fx4b3lwia57jyfx9wcqqg205qj73b"))))
+         "0hq2n5yfr9h2ayn10dy9lz08gd2q0awrm5cy2kqdmz4d8ss4r94p"))))
     (properties
      `((upstream-name . "GenomicInteractions")))
     (build-system r-build-system)
-- 
cgit v1.2.3


From fbe5a0872f5fa68f6ed893aa2492f487fdfed046 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:41:18 +0200
Subject: gnu: r-atacseqqc: Update to 1.8.5.

* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 73991f42c5..3d913b04d6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3529,14 +3529,14 @@ position-specific scores within R and Bioconductor.")
 (define-public r-atacseqqc
   (package
     (name "r-atacseqqc")
-    (version "1.8.1")
+    (version "1.8.5")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ATACseqQC" version))
        (sha256
         (base32
-         "0h5j3724hnd86w22vy3whqx6gkf0nf2dxd2clgzdvjzblbcd5s69"))))
+         "1i8f0vs0z4jbc2yvj1diay7jhcmb1a82zv96xllk771f25nvmmxp"))))
     (properties `((upstream-name . "ATACseqQC")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From d6158ecb3b7b2470c4e277b5048137af080f84fb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:41:26 +0200
Subject: gnu: r-abaenrichment: Update to 1.14.1.

* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3d913b04d6..e19b3dcdef 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3621,14 +3621,14 @@ annotations and ontologies.")
 (define-public r-abaenrichment
   (package
     (name "r-abaenrichment")
-    (version "1.14.0")
+    (version "1.14.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ABAEnrichment" version))
        (sha256
         (base32
-         "0av1dysk7qa8c4a0pp7yq89k8c4y40d2gyvsb8f27slvv2i3aad2"))))
+         "1w322wsp6bd3gyfwzgdf088cvfmpq774knr57d0dj420ljf4xn48"))))
     (properties `((upstream-name . "ABAEnrichment")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From b120789193fcc21004a07af6fd7fbba098a2d841 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 15:41:32 +0200
Subject: gnu: r-rsubread: Update to 1.34.6.

* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e19b3dcdef..74620a2cbe 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4841,14 +4841,14 @@ annotations.")
 (define-public r-rsubread
   (package
     (name "r-rsubread")
-    (version "1.34.4")
+    (version "1.34.6")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "Rsubread" version))
        (sha256
         (base32
-         "1230p8nsakifmpsqfiaj8rpm7npa8ab903mfjmayfa71n6yzvcbs"))))
+         "0nnfh4hnrs5kd72m8c50cidbsxjz12szw2vynpmg8q0wpd99q550"))))
     (properties `((upstream-name . "Rsubread")))
     (build-system r-build-system)
     (inputs `(("zlib" ,zlib)))
-- 
cgit v1.2.3


From 86445c8e35724d0bae3f2be9fe71376e844735fe Mon Sep 17 00:00:00 2001
From: Rutger Helling <rhelling@mykolab.com>
Date: Tue, 6 Aug 2019 18:56:54 +0200
Subject: gnu: ffmpeg: Update to 4.2.

* gnu/packages/video.scm (ffmpeg): Update to 4.2.
[inputs]: Add dav1d.
* gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance.
---
 gnu/packages/video.scm | 15 +++++++++------
 1 file changed, 9 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 04715a5ce1..1c3177ef2a 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -792,17 +792,18 @@ operate properly.")
 (define-public ffmpeg
   (package
     (name "ffmpeg")
-    (version "4.1.4")
+    (version "4.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://ffmpeg.org/releases/ffmpeg-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1qd7a10gs12ifcp31gramcgqjl77swskjfp7cijibgyg5yl4kw7i"))))
+               "1mgcxm7sqkajx35px05szsmn9mawwm03cfpmk3br7bcp3a1i0gq2"))))
     (build-system gnu-build-system)
     (inputs
-     `(("fontconfig" ,fontconfig)
+     `(("dav1d" ,dav1d)
+       ("fontconfig" ,fontconfig)
        ("freetype" ,freetype)
        ("frei0r-plugins" ,frei0r-plugins)
        ("gnutls" ,gnutls)
@@ -901,6 +902,7 @@ operate properly.")
          "--enable-libbluray"
          "--enable-libcaca"
          "--enable-libcdio"
+         "--enable-libdav1d"
          "--enable-libfreetype"
          "--enable-libmp3lame"
          "--enable-libopus"
@@ -983,9 +985,10 @@ audio/video codec library.")
     (arguments
      (substitute-keyword-arguments (package-arguments ffmpeg)
        ((#:configure-flags flags)
-        `(delete "--enable-libaom" ,flags))))
-    (inputs (alist-delete "libaom"
-                          (package-inputs ffmpeg)))))
+        `(delete "--enable-libdav1d" (delete "--enable-libaom"
+                 ,flags)))))
+    (inputs (alist-delete "dav1d" (alist-delete "libaom"
+                          (package-inputs ffmpeg))))))
 
 (define-public ffmpeg-for-stepmania
   (hidden-package
-- 
cgit v1.2.3


From ec405a4b01145e601294e2d878c36ea585dce795 Mon Sep 17 00:00:00 2001
From: Christopher Baines <mail@cbaines.net>
Date: Tue, 6 Aug 2019 19:53:51 +0100
Subject: gnu: perl-hash-merge: Change inputs to propagated-inputs.

Clone::Choose is required at runtime, so this input needs to be
propagated. This change fixes the sqitch package.

* gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to
propagated-inputs.
---
 gnu/packages/perl.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 2a40b2c736..5628a4b93f 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -4082,7 +4082,7 @@ relic support.")
         (base32
          "0h3wfnpv5d4d3f9xzmwkchay6251nhzngdv3f6xia56mj4hxabs0"))))
     (build-system perl-build-system)
-    (inputs
+    (propagated-inputs
      `(("perl-clone-choose" ,perl-clone-choose)))
     (home-page "https://metacpan.org/release/Hash-Merge")
     (synopsis "Merge arbitrarily deep hashes into a single hash")
-- 
cgit v1.2.3


From 5bc751925d19c8b84ef12873bebba78ee61e605e Mon Sep 17 00:00:00 2001
From: "Jakob L. Kreuze" <zerodaysfordays@sdf.lonestar.org>
Date: Mon, 29 Jul 2019 18:36:01 -0400
Subject: doc: Add note about signing keys.

* doc/guix.texi (Invoking guix deploy): Add note explaining that
deployment targets must authorize the coordinator machine's signing key.
---
 doc/guix.texi | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)

diff --git a/doc/guix.texi b/doc/guix.texi
index cb60d5c7b7..5d274e02fe 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -25530,6 +25530,22 @@ complex deployment may involve, for example, starting virtual machines through
 a Virtual Private Server (VPS) provider.  In such a case, a different
 @var{environment} type would be used.
 
+Do note that you first need to generate a key pair on the coordinator machine
+to allow the daemon to export signed archives of files from the store
+(@pxref{Invoking guix archive}).
+
+@example
+# guix archive --generate-key
+@end example
+
+@noindent
+Each target machine must authorize the key of the master machine so that it
+accepts store items it receives from the coordinator:
+
+@example
+# guix archive --authorize < coordinator-public-key.txt
+@end example
+
 @deftp {Data Type} machine
 This is the data type representing a single machine in a heterogeneous Guix
 deployment.
-- 
cgit v1.2.3


From d97ce20400b5d2967bfbc0e9fbfb99bbb2daed4f Mon Sep 17 00:00:00 2001
From: "Jakob L. Kreuze" <zerodaysfordays@sdf.lonestar.org>
Date: Tue, 30 Jul 2019 13:48:32 -0400
Subject: machine: Rename 'system' field.

* gnu/machine.scm (machine-system): Delete variable.
(machine-operating-system): New variable.
All callers changed.
* doc/guix.texi (Invoking guix deploy): Use the
'machine-operating-system' accessor rather than 'machine-system'.
---
 doc/guix.texi       |  4 ++--
 gnu/machine.scm     | 12 ++++++------
 gnu/machine/ssh.scm |  2 +-
 3 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/doc/guix.texi b/doc/guix.texi
index 5d274e02fe..734206a4b2 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -25510,7 +25510,7 @@ evaluates to.  As an example, @var{file} might contain a definition like this:
             %base-services))))
 
 (list (machine
-       (system %system)
+       (operating-system %system)
        (environment managed-host-environment-type)
        (configuration (machine-ssh-configuration
                        (host-name "localhost")
@@ -25551,7 +25551,7 @@ This is the data type representing a single machine in a heterogeneous Guix
 deployment.
 
 @table @asis
-@item @code{system}
+@item @code{operating-system}
 The object of the operating system configuration to deploy.
 
 @item @code{environment}
diff --git a/gnu/machine.scm b/gnu/machine.scm
index 0b79402b0a..30ae97f6ec 100644
--- a/gnu/machine.scm
+++ b/gnu/machine.scm
@@ -34,7 +34,7 @@
             machine?
             this-machine
 
-            machine-system
+            machine-operating-system
             machine-environment
             machine-configuration
             machine-display-name
@@ -85,14 +85,14 @@
   make-machine
   machine?
   this-machine
-  (system        machine-system)       ; <operating-system>
-  (environment   machine-environment)  ; symbol
-  (configuration machine-configuration ; configuration object
-                 (default #f)))        ; specific to environment
+  (operating-system machine-operating-system) ; <operating-system>
+  (environment      machine-environment)      ; symbol
+  (configuration    machine-configuration     ; configuration object
+                    (default #f)))            ; specific to environment
 
 (define (machine-display-name machine)
   "Return the host-name identifying MACHINE."
-  (operating-system-host-name (machine-system machine)))
+  (operating-system-host-name (machine-operating-system machine)))
 
 (define (machine-remote-eval machine exp)
   "Evaluate EXP, a gexp, on MACHINE. Ensure that all the elements EXP refers to
diff --git a/gnu/machine/ssh.scm b/gnu/machine/ssh.scm
index 552eafa9de..d1c90b6313 100644
--- a/gnu/machine/ssh.scm
+++ b/gnu/machine/ssh.scm
@@ -166,7 +166,7 @@ of MACHINE's system profile, ordered from most recent to oldest."
 environment type of 'managed-host."
   (maybe-raise-unsupported-configuration-error machine)
   (mlet %store-monad ((boot-parameters (machine-boot-parameters machine)))
-    (let* ((os (machine-system machine))
+    (let* ((os (machine-operating-system machine))
            (eval (cut machine-remote-eval machine <>))
            (menu-entries (map boot-parameters->menu-entry boot-parameters))
            (bootloader-configuration (operating-system-bootloader os))
-- 
cgit v1.2.3


From 5f04e9f9620aeb45940855e4f655f22db55ba6eb Mon Sep 17 00:00:00 2001
From: "Jakob L. Kreuze" <zerodaysfordays@sdf.lonestar.org>
Date: Tue, 6 Aug 2019 13:37:32 -0400
Subject: reconfigure: Fix GC root installation.

Fixes <https://bugs.gnu.org/36942>.
Reported by ison <ison@airmail.cc>.

guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
---
 guix/scripts/system/reconfigure.scm | 20 +++++++++++++++-----
 1 file changed, 15 insertions(+), 5 deletions(-)

diff --git a/guix/scripts/system/reconfigure.scm b/guix/scripts/system/reconfigure.scm
index dee0c24bd2..579b7fffbe 100644
--- a/guix/scripts/system/reconfigure.scm
+++ b/guix/scripts/system/reconfigure.scm
@@ -195,21 +195,31 @@ BOOTLOADER-PACKAGE."
                         (srfi srfi-34)
                         (srfi srfi-35))
            (let* ((gc-root (string-append #$target %gc-roots-directory "/bootcfg"))
-                  (temp-gc-root (string-append gc-root ".new")))
-             (switch-symlinks temp-gc-root gc-root)
-             (install-boot-config #$bootcfg #$bootcfg-file #$target)
+                  (new-gc-root (string-append gc-root ".new")))
+             ;; #$bootcfg has dependencies.
+             ;; The bootloader magically loads the configuration from
+             ;; (string-append #$target #$bootcfg-file) (for example
+             ;; "/boot/grub/grub.cfg").
+             ;; If we didn't do something special, the garbage collector
+             ;; would remove the dependencies of #$bootcfg.
+             ;; Register #$bootcfg as a GC root.
              ;; Preserve the previous activation's garbage collector root
              ;; until the bootloader installer has run, so that a failure in
              ;; the bootloader's installer script doesn't leave the user with
              ;; a broken installation.
+             (switch-symlinks new-gc-root #$bootcfg)
+             (install-boot-config #$bootcfg #$bootcfg-file #$target)
              (when #$installer
                (catch #t
                  (lambda ()
                    (#$installer #$bootloader-package #$device #$target))
                  (lambda args
-                   (delete-file temp-gc-root)
+                   (delete-file new-gc-root)
                    (apply throw args))))
-             (rename-file temp-gc-root gc-root)))))))
+             ;; We are sure that the installation of the bootloader
+             ;; succeeded, so we can replace the old GC root by the new
+             ;; GC root now.
+             (rename-file new-gc-root gc-root)))))))
 
 (define* (install-bootloader eval configuration bootcfg
                              #:key
-- 
cgit v1.2.3


From fd3119db4fed02a1f3491460be776a3b5d2b2cd3 Mon Sep 17 00:00:00 2001
From: "Jakob L. Kreuze" <zerodaysfordays@sdf.lonestar.org>
Date: Wed, 31 Jul 2019 10:38:29 -0400
Subject: machine: Implement safety checks.

* gnu/machine/ssh.scm (machine-check-file-system-availability)
(machine-check-initrd-modules, check-deployment-sanity): New variable.
(deploy-managed-host): Perform safety checks before deploying.
---
 gnu/machine/ssh.scm | 146 +++++++++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 145 insertions(+), 1 deletion(-)

diff --git a/gnu/machine/ssh.scm b/gnu/machine/ssh.scm
index d1c90b6313..274d56db26 100644
--- a/gnu/machine/ssh.scm
+++ b/gnu/machine/ssh.scm
@@ -20,6 +20,9 @@
   #:use-module (gnu machine)
   #:autoload   (gnu packages gnupg) (guile-gcrypt)
   #:use-module (gnu system)
+  #:use-module (gnu system file-systems)
+  #:use-module (gnu system uuid)
+  #:use-module (guix diagnostics)
   #:use-module (guix gexp)
   #:use-module (guix i18n)
   #:use-module (guix modules)
@@ -29,6 +32,7 @@
   #:use-module (guix scripts system reconfigure)
   #:use-module (guix ssh)
   #:use-module (guix store)
+  #:use-module (guix utils)
   #:use-module (ice-9 match)
   #:use-module (srfi srfi-19)
   #:use-module (srfi srfi-26)
@@ -98,6 +102,145 @@ an environment type of 'managed-host."
   (maybe-raise-unsupported-configuration-error machine)
   (remote-eval exp (machine-ssh-session machine)))
 
+
+;;;
+;;; Safety checks.
+;;;
+
+(define (machine-check-file-system-availability machine)
+  "Raise a '&message' error condition if any of the file-systems specified in
+MACHINE's 'system' declaration do not exist on the machine."
+  (define file-systems
+    (filter (lambda (fs)
+              (and (file-system-mount? fs)
+                   (not (member (file-system-type fs)
+                                %pseudo-file-system-types))
+                   (not (memq 'bind-mount (file-system-flags fs)))))
+            (operating-system-file-systems (machine-operating-system machine))))
+
+  (define (check-literal-file-system fs)
+    (define remote-exp
+      #~(catch 'system-error
+          (lambda ()
+            (stat #$(file-system-device fs))
+            #t)
+          (lambda args
+            (system-error-errno args))))
+
+    (mlet %store-monad ((errno (machine-remote-eval machine remote-exp)))
+      (when (number? errno)
+        (raise (condition
+                (&message
+                 (message (format #f (G_ "device '~a' not found: ~a")
+                                  (file-system-device fs)
+                                  (strerror errno)))))))
+      (return #t)))
+
+  (define (check-labeled-file-system fs)
+    (define remote-exp
+      (with-imported-modules '((gnu build file-systems))
+        #~(begin
+            (use-modules (gnu build file-systems))
+            (find-partition-by-label #$(file-system-label->string
+                                        (file-system-device fs))))))
+
+    (mlet %store-monad ((result (machine-remote-eval machine remote-exp)))
+      (unless result
+        (raise (condition
+                (&message
+                 (message (format #f (G_ "no file system with label '~a'")
+                                  (file-system-label->string
+                                   (file-system-device fs))))))))
+      (return #t)))
+
+  (define (check-uuid-file-system fs)
+    (define remote-exp
+      (with-imported-modules (source-module-closure
+                              '((gnu build file-systems)
+                                (gnu system uuid)))
+        #~(begin
+            (use-modules (gnu build file-systems)
+                         (gnu system uuid))
+
+            (define uuid
+              (string->uuid #$(uuid->string (file-system-device fs))))
+
+            (find-partition-by-uuid uuid))))
+
+    (mlet %store-monad ((result (machine-remote-eval machine remote-exp)))
+      (unless result
+        (raise (condition
+                (&message
+                 (message (format #f (G_ "no file system with UUID '~a'")
+                                  (uuid->string (file-system-device fs))))))))
+      (return #t)))
+
+  (mbegin %store-monad
+    (mapm %store-monad check-literal-file-system
+          (filter (lambda (fs)
+                    (string? (file-system-device fs)))
+                  file-systems))
+    (mapm %store-monad check-labeled-file-system
+          (filter (lambda (fs)
+                    (file-system-label? (file-system-device fs)))
+                  file-systems))
+    (mapm %store-monad check-uuid-file-system
+          (filter (lambda (fs)
+              (uuid? (file-system-device fs)))
+                  file-systems))))
+
+(define (machine-check-initrd-modules machine)
+  "Raise a '&message' error condition if any of the modules needed by
+'needed-for-boot' file systems in MACHINE are not available in the initrd."
+  (define file-systems
+    (filter file-system-needed-for-boot?
+            (operating-system-file-systems (machine-operating-system machine))))
+
+  (define (missing-modules fs)
+    (define remote-exp
+      (let ((device (file-system-device fs)))
+        (with-imported-modules (source-module-closure
+                                '((gnu build file-systems)
+                                  (gnu build linux-modules)
+                                  (gnu system uuid)))
+          #~(begin
+              (use-modules (gnu build file-systems)
+                           (gnu build linux-modules)
+                           (gnu system uuid))
+
+              (define dev
+                #$(cond ((string? device) device)
+                        ((uuid? device) #~(find-partition-by-uuid
+                                           (string->uuid
+                                            #$(uuid->string device))))
+                        ((file-system-label? device)
+                         #~(find-partition-by-label
+                            (file-system-label->string #$device)))))
+
+              (missing-modules dev '#$(operating-system-initrd-modules
+                                       (machine-operating-system machine)))))))
+    (mlet %store-monad ((missing (machine-remote-eval machine remote-exp)))
+      (return (list fs missing))))
+
+  (mlet %store-monad ((device (mapm %store-monad missing-modules file-systems)))
+    (for-each (match-lambda
+                ((fs missing)
+                 (unless (null? missing)
+                   (raise (condition
+                           (&message
+                            (message (format #f (G_ "~a missing modules ~{ ~a~}~%")
+                                             (file-system-device fs)
+                                             missing))))))))
+              device)
+    (return #t)))
+
+(define (check-deployment-sanity machine)
+  "Raise a '&message' error condition if it is clear that deploying MACHINE's
+'system' declaration would fail."
+  (mbegin %store-monad
+    (machine-check-file-system-availability machine)
+    (machine-check-initrd-modules machine)))
+
 
 ;;;
 ;;; System deployment.
@@ -165,7 +308,8 @@ of MACHINE's system profile, ordered from most recent to oldest."
   "Internal implementation of 'deploy-machine' for MACHINE instances with an
 environment type of 'managed-host."
   (maybe-raise-unsupported-configuration-error machine)
-  (mlet %store-monad ((boot-parameters (machine-boot-parameters machine)))
+  (mlet %store-monad ((_ (check-deployment-sanity machine))
+                      (boot-parameters (machine-boot-parameters machine)))
     (let* ((os (machine-operating-system machine))
            (eval (cut machine-remote-eval machine <>))
            (menu-entries (map boot-parameters->menu-entry boot-parameters))
-- 
cgit v1.2.3


From 5fe9ce982d1f35e2e7f147e194b8156763aae669 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 23:34:42 +0200
Subject: gnu: r-bayestestr: Update to 0.2.5.

* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b6f5ec57ad..1ff08fb289 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8109,14 +8109,14 @@ differentiation.")
 (define-public r-bayestestr
   (package
     (name "r-bayestestr")
-    (version "0.2.2")
+    (version "0.2.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bayestestR" version))
        (sha256
         (base32
-         "09r654lrhwwnshn5h2s2fbx3c8wigv3j4sva5hmfnkwjg8cclhd9"))))
+         "08d3bsb6li59n17bx1zrqnlnvniyb3vls9kl856km4chx3b2ff82"))))
     (properties `((upstream-name . "bayestestR")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From f2758945fee500eecbb6277b52f4d29f3ab8d0aa Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 6 Aug 2019 23:34:50 +0200
Subject: gnu: r-ggplotify: Update to 0.0.4.

* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1ff08fb289..24bdd55d34 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13636,14 +13636,14 @@ package.")
 (define-public r-ggplotify
   (package
     (name "r-ggplotify")
-    (version "0.0.3")
+    (version "0.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggplotify" version))
        (sha256
         (base32
-         "14hqlpvnaq5psz1ljcpw9isa06827rg3fm5c1dx159rsjfi56yby"))))
+         "0nv3wdmxnc5ww9m3xlgnb0jp30j45dg33nqc6gg3y36svg8anjcg"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
-- 
cgit v1.2.3


From ad6814557e0943d3a99ca3f20781160cccbb4e5d Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Wed, 7 Aug 2019 00:23:20 -0400
Subject: gnu: linux-libre@4.4: Update to 4.4.188.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.188.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 9f20d2bace..566670670a 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -382,10 +382,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.9)))
 
-(define-public linux-libre-4.4-version "4.4.187")
+(define-public linux-libre-4.4-version "4.4.188")
 (define-public linux-libre-4.4-pristine-source
   (let ((version linux-libre-4.4-version)
-        (hash (base32 "1dlzb5yzcsicd41myj3q4dq2ql8xcc49brs5f7xjmc5ynvvjjgnc")))
+        (hash (base32 "1llxamm62kgqd7dig98n8m16qas8dd8rrkmwpfcdgyf8rag216ff")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.4)))
-- 
cgit v1.2.3


From 2b6c7a7cbc2f0165ecd38061479fc0f9e767a661 Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Wed, 7 Aug 2019 00:24:29 -0400
Subject: gnu: linux-libre@4.9: Update to 4.9.188.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.188.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 566670670a..22bcf238da 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -374,10 +374,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.14)))
 
-(define-public linux-libre-4.9-version "4.9.187")
+(define-public linux-libre-4.9-version "4.9.188")
 (define-public linux-libre-4.9-pristine-source
   (let ((version linux-libre-4.9-version)
-        (hash (base32 "1iyimwl4ysnk6m66m73sg0cnp4vac56d6yy174shfpnj5h2csjq1")))
+        (hash (base32 "08p2cfc9982b804vmkapfasgipf6969g625ih7z3062xn99rhlr7")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.9)))
-- 
cgit v1.2.3


From 7acea31bbc885c95871c734ee6c97b156e253524 Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Wed, 7 Aug 2019 00:25:04 -0400
Subject: gnu: linux-libre@4.14: Update to 4.14.137.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.137.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 22bcf238da..71dcd56f8e 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -366,10 +366,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.19)))
 
-(define-public linux-libre-4.14-version "4.14.136")
+(define-public linux-libre-4.14-version "4.14.137")
 (define-public linux-libre-4.14-pristine-source
   (let ((version linux-libre-4.14-version)
-        (hash (base32 "0w6z5fhwqgpqnz2js8vj9j5dl6isx8n7rnzrm0vr9r8njaazz396")))
+        (hash (base32 "0a72pab0zxy28i02glnzj6avzcf0a4gxxnadbdd343rh549yky4k")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.14)))
-- 
cgit v1.2.3


From 9f90e58c4a6ee6dbaf9d9a1934534574aedceace Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Wed, 7 Aug 2019 00:26:01 -0400
Subject: gnu: linux-libre@4.19: Update to 4.19.65.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.65.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 71dcd56f8e..8f9fb57eb9 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -358,10 +358,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.2)))
 
-(define-public linux-libre-4.19-version "4.19.64")
+(define-public linux-libre-4.19-version "4.19.65")
 (define-public linux-libre-4.19-pristine-source
   (let ((version linux-libre-4.19-version)
-        (hash (base32 "1gasmcdsrsk81dscslmrsxqsvkfp5xxdx3ay95izggpk7piqnvvs")))
+        (hash (base32 "1pyyhr2airxzk4c6n7140yl723dc7yw7igy5i5i2ih0nd4c3k6g5")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.19)))
-- 
cgit v1.2.3


From 9d52e3f3d54af3e20cc7a2b1d9ab282f8fe0b0e9 Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Wed, 7 Aug 2019 00:26:39 -0400
Subject: gnu: linux-libre: Update to 5.2.7.

* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.7.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 8f9fb57eb9..a5b9f6bfed 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -350,10 +350,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                         "linux-" version ".tar.xz"))
     (sha256 hash)))
 
-(define-public linux-libre-5.2-version "5.2.6")
+(define-public linux-libre-5.2-version "5.2.7")
 (define-public linux-libre-5.2-pristine-source
   (let ((version linux-libre-5.2-version)
-        (hash (base32 "1whzgdz1wnjzkb78yqz4xs3mad02rv17ksmwaf4ykp4lfgxml45y")))
+        (hash (base32 "1aazhf0v8bv4py0wnqkdmiy80fchnix431l0hda2fkwsdf9njgnv")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.2)))
-- 
cgit v1.2.3


From 18e700517e99ead57f667103d6dad435b769ea3b Mon Sep 17 00:00:00 2001
From: Rutger Helling <rhelling@mykolab.com>
Date: Wed, 7 Aug 2019 08:13:37 +0200
Subject: gnu: dolphin-emu: Update to commit 24718c1.

* gnu/packages/emulators.scm (dolphin-emu): Update to commit 24718c1.
---
 gnu/packages/emulators.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/emulators.scm b/gnu/packages/emulators.scm
index 8d0162a2d1..2d1fba2372 100644
--- a/gnu/packages/emulators.scm
+++ b/gnu/packages/emulators.scm
@@ -119,8 +119,8 @@
 
 ;; Building from recent Git because the official 5.0 release no longer builds.
 (define-public dolphin-emu
-  (let ((commit "2c57e709d0f9e4010a4415de4192de887e37f187")
-        (revision "5"))
+  (let ((commit "24718c1a389e4f51db974575cd15c372485b92e2")
+        (revision "6"))
     (package
       (name "dolphin-emu")
       (version (git-version "5.0" revision commit))
@@ -146,7 +146,7 @@
              #t))
          (sha256
           (base32
-           "0aszfdfvs7yg4bmrd3qxwsiz7hx3mrj29f4aw86bz7h9j7hkh57f"))))
+           "1d92rhnw307j3m6swk6bycb8fyc7vw2hfgakd5hpsc4qw65vxfq8"))))
       (build-system cmake-build-system)
       (arguments
        '(#:tests? #f
-- 
cgit v1.2.3


From f503ed92d21ffd02ad5b910802d8ca0321c87894 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 7 Aug 2019 12:52:00 +0200
Subject: gnu: r-servr: Update to 0.15.

* gnu/packages/cran.scm (r-servr): Update to 0.15.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 24bdd55d34..779c99a5b7 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -500,13 +500,13 @@ in systems and applications.")
 (define-public r-servr
   (package
     (name "r-servr")
-    (version "0.14")
+    (version "0.15")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "servr" version))
               (sha256
                (base32
-                "0zjjnfgas9d16fihksyk24kgkkqswb4sd0rz51id2ni1ymdyasjk"))))
+                "199k9aghwk9rf1rm8pjg60xacqww25cza259h5dfj1ixil0m6dxi"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-httpuv" ,r-httpuv)
-- 
cgit v1.2.3


From 33af00eea4990ca2893b7d9735f82df11792b8ac Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 7 Aug 2019 12:52:08 +0200
Subject: gnu: r-tinytex: Update to 0.15.

* gnu/packages/cran.scm (r-tinytex): Update to 0.15.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 779c99a5b7..810f1f6dea 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3944,14 +3944,14 @@ terminals.")
 (define-public r-tinytex
   (package
     (name "r-tinytex")
-    (version "0.14")
+    (version "0.15")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tinytex" version))
        (sha256
         (base32
-         "0aab7ybc6kkxxk3lzdmbla8zcpp6nmlahchc33miv28cmnqw363w"))))
+         "145dmgq7h55mmqqlnnj153j484x2a9s1fbvjbjkdyqzpnz9qh2ax"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-xfun" ,r-xfun)))
-- 
cgit v1.2.3


From 2132e92261c767c3673dcb6a241bb5f21da2a05d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 7 Aug 2019 12:52:21 +0200
Subject: gnu: r-ggpubr: Update to 0.2.2.

* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.2.
[propagated-inputs]: Add r-rlang.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 810f1f6dea..b8e0ccb753 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5569,14 +5569,14 @@ and adds the annotation to the plot.")
 (define-public r-ggpubr
   (package
     (name "r-ggpubr")
-    (version "0.2.1")
+    (version "0.2.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggpubr" version))
        (sha256
         (base32
-         "0a4dv6a752hwvc7l31xs7bgqhfzfdy94xp6wgwaxf5dxm46na7k1"))))
+         "0r5knv3707pmpngmj60zn761y3bh8lj89dhh1b80ss083xnxr4qw"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cowplot" ,r-cowplot)
@@ -5590,6 +5590,7 @@ and adds the annotation to the plot.")
        ("r-magrittr" ,r-magrittr)
        ("r-polynom" ,r-polynom)
        ("r-purrr" ,r-purrr)
+       ("r-rlang" ,r-rlang)
        ("r-scales" ,r-scales)
        ("r-tidyr" ,r-tidyr)))
     (home-page "http://www.sthda.com/english/rpkgs/ggpubr")
-- 
cgit v1.2.3


From 42a8b01d155d1c13f0d3c16a4f1aae628bbe7fd8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 7 Aug 2019 12:52:42 +0200
Subject: gnu: r-epi: Update to 2.38.

* gnu/packages/cran.scm (r-epi): Update to 2.38.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b8e0ccb753..4b998eb1fb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11045,14 +11045,14 @@ model with finite state space using the Aalen-Johansen estimator.")
 (define-public r-epi
   (package
     (name "r-epi")
-    (version "2.37")
+    (version "2.38")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Epi" version))
        (sha256
         (base32
-         "1lanr9x0c6w22406p56j7cwk6wck8njq6pscb4gzc613d68zj1lk"))))
+         "0ald9fjynrlyah8nzwfs49a08j4myd3c5bm56zn61gg5pyyhi8hd"))))
     (properties `((upstream-name . "Epi")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From fdc0688cba75b9ba1b83183cc978f8cc683499d4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 7 Aug 2019 12:52:53 +0200
Subject: gnu: r-dt: Update to 0.8.

* gnu/packages/statistics.scm (r-dt): Update to 0.8.
[propagated-inputs]: Add r-jsonlite.
---
 gnu/packages/statistics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 67c48623bf..f763854926 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3165,13 +3165,13 @@ using the multicore functionality of the parallel package.")
 (define-public r-dt
   (package
     (name "r-dt")
-    (version "0.7")
+    (version "0.8")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "DT" version))
               (sha256
                (base32
-                "0b6ywgzk9b35y5f69zwfz3vv7qwqqj3xsmy0xymf7nfcvrqg3qqx"))))
+                "08cfmv3d5awvd9h8648bvidcg2ak5pvl2p6vqwqwy1l82ia506ch"))))
     (properties
      `((upstream-name . "DT")))
     (build-system r-build-system)
@@ -3179,6 +3179,7 @@ using the multicore functionality of the parallel package.")
      `(("r-crosstalk" ,r-crosstalk)
        ("r-htmltools" ,r-htmltools)
        ("r-htmlwidgets" ,r-htmlwidgets)
+       ("r-jsonlite" ,r-jsonlite)
        ("r-magrittr" ,r-magrittr)
        ("r-promises" ,r-promises)))
     (home-page "http://rstudio.github.io/DT")
-- 
cgit v1.2.3


From 9fa7c20be969eee7fa04d94fafeac94818fff01a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 7 Aug 2019 19:02:10 +0200
Subject: gnu: gnome-maps: Fix runtime error.

Fixes <https://bugs.gnu.org/35761>.

* gnu/packages/geo.scm (gnome-maps)[arguments]: Add lib output of
gnome-online-accounts and geocode-glib to LD_LIBRARY_PATH.
[inputs]: Add gnome-online-accounts:lib.
---
 gnu/packages/geo.scm | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 8005c46129..edb3b49841 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -131,7 +131,12 @@ topology functions.")
                    (gi-typelib-path (getenv "GI_TYPELIB_PATH"))
                    (goa-path (string-append
                               (assoc-ref inputs "gnome-online-accounts")
+                              "/lib:"
+                              (assoc-ref inputs "gnome-online-accounts:lib")
                               "/lib"))
+                   (geocode-glib-path (string-append
+                                       (assoc-ref inputs "geocode-glib")
+                                       "/lib"))
                    (webkitgtk-path (string-append
                                     (assoc-ref inputs "webkitgtk")
                                     "/lib")))
@@ -141,7 +146,8 @@ topology functions.")
                  ;; There seems to be no way to embed the path of
                  ;; libgoa-1.0.so.0, libwebkit2gtk-4.0.so.37 and
                  ;; libjavascriptcoregtk-4.0.so.18.
-                 `("LD_LIBRARY_PATH" ":" prefix (,goa-path ,webkitgtk-path)))
+                 `("LD_LIBRARY_PATH" ":" prefix
+                   (,goa-path ,webkitgtk-path ,geocode-glib-path)))
                #t))))))
     (native-inputs
      `(("gobject-introspection" ,gobject-introspection)
@@ -163,6 +169,7 @@ topology functions.")
        ("gjs" ,gjs)
        ("glib" ,glib)
        ("gnome-online-accounts" ,gnome-online-accounts)
+       ("gnome-online-accounts:lib" ,gnome-online-accounts "lib")
        ("gsettings-desktop-schemas" ,gsettings-desktop-schemas)
        ("rest" ,rest)
        ("webkitgtk" ,webkitgtk)))
-- 
cgit v1.2.3


From 0d7f282b0295f9b2edcc960d25d53e69c81f08dd Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:09:37 +0300
Subject: gnu: openconnect: Fix propagated-inputs.

* gnu/packages/vpn.scm (openconnect)[inputs]: Move libxml2, gnutls,
zlib ...
[propagated-inputs]: ... to here.
---
 gnu/packages/vpn.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index c7046b7f50..54162a9ff2 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -3,7 +3,7 @@
 ;;; Copyright © 2013, 2016, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015 Jeff Mickey <j@codemac.net>
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016, 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2018 Pierre Langlois <pierre.langlois@gmx.com>
@@ -252,11 +252,12 @@ the user specifically asks to proxy, so the @dfn{VPN} interface no longer
             (sha256 (base32
                      "1wlypi68kqqg2mdck8wvf6aanhrmf9i7z6lngyxvcrp23jdzz34h"))))
    (build-system gnu-build-system)
-   (inputs
+   (propagated-inputs
     `(("libxml2" ,libxml2)
       ("gnutls" ,gnutls)
-      ("vpnc-scripts" ,vpnc-scripts)
       ("zlib" ,zlib)))
+   (inputs
+    `(("vpnc-scripts" ,vpnc-scripts)))
    (native-inputs
     `(("gettext" ,gettext-minimal)
       ("pkg-config" ,pkg-config)))
-- 
cgit v1.2.3


From db736ca20c8b1751a2c90cc6731ced6abb58b984 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:13:06 +0300
Subject: gnu: ocproxy: Remove extra build phase.

* gnu/packages/vpn.scm (ocproxy)[arguments]: Remove unneeded 'autogen
phase.
---
 gnu/packages/vpn.scm | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 54162a9ff2..d1a7248536 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -227,11 +227,6 @@ the entire VPN in a network namespace accessible only through SSH.")
        ("automake" ,automake)))
     (inputs
      `(("libevent" ,libevent)))
-    (arguments
-     '(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'autogen
-           (lambda _ (invoke "sh" "autogen.sh"))))))
     (home-page "https://github.com/cernekee/ocproxy")
     (synopsis "OpenConnect proxy")
     (description
-- 
cgit v1.2.3


From fe7023a744b9c6753a250475ed1c908e25413f2a Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:16:15 +0300
Subject: gnu: i3blocks: Remove extra build phase.

* gnu/packages/wm.scm (i3blocks)[arguments]: Remove unneeded 'autogen
phase.
---
 gnu/packages/wm.scm | 2 --
 1 file changed, 2 deletions(-)

diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index c56cf406ee..160c267882 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -290,8 +290,6 @@ Despite the name it should work with any X11 window manager.")
       (arguments
        `(#:make-flags (list "CC=gcc" (string-append "PREFIX=" %output))
          #:phases (modify-phases %standard-phases
-                    (add-after 'unpack 'autogen
-                      (lambda _ (invoke "sh" "autogen.sh")))
                     (add-after 'install 'install-doc
                       (lambda* (#:key outputs #:allow-other-keys)
                         (let* ((out (assoc-ref outputs "out"))
-- 
cgit v1.2.3


From 22300394276d84a6a408dc117f5de93c3d380553 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:19:27 +0300
Subject: gnu: vapoursynth: Remove extra build phase.

* gnu/packages/video.scm (vapoursynth)[arguments]: Remove unneeded
'autogen phase.
---
 gnu/packages/video.scm | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 1c3177ef2a..6f528af589 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -2066,12 +2066,6 @@ capabilities.")
        ("libass" ,libass)
        ("tesseract-ocr" ,tesseract-ocr)
        ("zimg" ,zimg)))
-    (arguments
-     '(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'autogen
-           (lambda _
-             (invoke "sh" "autogen.sh"))))))
     (home-page "http://www.vapoursynth.com/")
     (synopsis "Video processing framework")
     (description "VapourSynth is a C++ library and Python module for video
-- 
cgit v1.2.3


From d05e607c9d8d92bdaf3dd7ce97fae0811ae1ccfb Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:21:56 +0300
Subject: gnu: libsmpeg: Remove extra build phase.

* gnu/packages/video.scm (libsmpeg)[arguments]: Remove unnecessary
'autogen phase.
---
 gnu/packages/video.scm | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 6f528af589..a6e9f6277e 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -2508,12 +2508,6 @@ Other features include a live preview and live streaming.")
                (base32
                 "18yfkr70lr1x1hc8snn2ldnbzdcc7b64xmkqrfk8w59gpg7sl1xn"))))
     (build-system gnu-build-system)
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'autogen.sh
-           (lambda _
-             (invoke "sh" "autogen.sh"))))))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)))
-- 
cgit v1.2.3


From 1d05b683efcb2d960b6910f6e979ae5ca7879544 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:24:16 +0300
Subject: gnu: libmediainfo: Remove extra build phase.

* gnu/packages/video.scm (libmediainfo)[arguments]: Remove unneeded
'autogen phase.
---
 gnu/packages/video.scm | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index a6e9f6277e..eda5b8fc39 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -2887,10 +2887,7 @@ practically any type of media.")
          (add-after 'unpack 'change-to-build-dir
            (lambda _
              (chdir "Project/GNU/Library")
-             #t))
-         (add-after 'change-to-build-dir 'autogen
-           (lambda _
-             (invoke "sh" "autogen.sh"))))))
+             #t)))))
     (home-page "https://mediaarea.net/en/MediaInfo")
     (synopsis "Library for retrieving media metadata")
     (description "MediaInfo is a library used for retrieving technical
-- 
cgit v1.2.3


From 02abfcca464e3c410c815b302476738587f9f20d Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:27:12 +0300
Subject: gnu: libetpan: Rework custom phases.

* gnu/packages/mail.scm (libetpan)[arguments]: Use custom 'autogen phase
to replace 'boostrap phase.
---
 gnu/packages/mail.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 40fe7d9450..d5e2790b49 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -1051,7 +1051,7 @@ useful features.")
     (arguments
       '(#:phases
         (modify-phases %standard-phases
-          (add-after 'unpack 'autogen
+          (replace 'bootstrap
             (lambda _
               (setenv "NOCONFIGURE" "true")
               (invoke "sh" "autogen.sh"))))
-- 
cgit v1.2.3


From 7b0efd4c32666e74923c11a6700205638c6eaf90 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:28:44 +0300
Subject: gnu: dovecot-trees: Remove extra build phase.

* gnu/packages/mail.scm (dovecot-trees)[arguments]: Remove unneeded
'autogen phase.
---
 gnu/packages/mail.scm | 7 +------
 1 file changed, 1 insertion(+), 6 deletions(-)

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index d5e2790b49..a6bb50fd1a 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -1365,12 +1365,7 @@ It supports mbox/Maildir and its own dbox/mdbox formats.")
      `(#:tests? #f ;No tests exist.
        #:configure-flags (list (string-append "--with-dovecot="
                                               (assoc-ref %build-inputs "dovecot")
-                                              "/lib/dovecot"))
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'autogen
-           (lambda _
-             (invoke "sh" "autogen.sh"))))))
+                                              "/lib/dovecot"))))
     (home-page "https://0xacab.org/riseuplabs/trees")
     (synopsis "NaCL-based Dovecot email storage encryption plugin")
     (description
-- 
cgit v1.2.3


From 1f53fdae8245740e22ce2c81ec95b7d1897c9d05 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:29:59 +0300
Subject: gnu: dovecot-libsodium-plugin: Remove extra build phase.

* gnu/packages/mail.scm (dovecot-libsodium-plugin)[arguments]: Remove
unneeded 'autogen phase.
---
 gnu/packages/mail.scm | 7 +------
 1 file changed, 1 insertion(+), 6 deletions(-)

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index a6bb50fd1a..b81b15d80c 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -1416,12 +1416,7 @@ using libsodium sealed boxes.
        `(#:tests? #f ;No tests exist.
          #:configure-flags (list (string-append "--with-dovecot="
                                                 (assoc-ref %build-inputs "dovecot")
-                                                "/lib/dovecot"))
-         #:phases
-         (modify-phases %standard-phases
-           (add-after 'unpack 'autogen
-             (lambda _
-               (invoke "sh" "autogen.sh"))))))
+                                                "/lib/dovecot"))))
       (home-page "https://github.com/LuckyFellow/dovecot-libsodium-plugin")
       (synopsis "Libsodium password hashing schemes plugin for Dovecot")
       (description
-- 
cgit v1.2.3


From e3a699380ecb5da8008e398ea39528e7661f511f Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:34:11 +0300
Subject: gnu: ghmm: Update source file-name field.

* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name
field to include '-checkout' string.
---
 gnu/packages/machine-learning.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index dd5ee1e9ee..5ab0e6adb3 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -193,7 +193,7 @@ classification.")
                 (uri (svn-reference
                       (url "http://svn.code.sf.net/p/ghmm/code/trunk")
                       (revision svn-revision)))
-                (file-name (string-append name "-" version))
+                (file-name (string-append name "-" version "-checkout"))
                 (sha256
                  (base32
                   "0qbq1rqp94l530f043qzp8aw5lj7dng9wq0miffd7spd1ff638wq"))))
-- 
cgit v1.2.3


From a491856f2ac1d9c54536b21723fa5f0fc19d71b1 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:34:40 +0300
Subject: gnu: ghmm: Remove extra build phase.

* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded
'autogen phase.
---
 gnu/packages/machine-learning.scm | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 5ab0e6adb3..e48c91a2cf 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -251,10 +251,7 @@ classification.")
                   (string-append indent
                                  "@unittest.skip(\"Disabled by Guix\")\n"
                                  line)))
-               #t))
-           (add-after 'disable-broken-tests 'autogen
-             (lambda _
-               (invoke "bash" "autogen.sh"))))))
+               #t)))))
       (inputs
        `(("python" ,python-2) ; only Python 2 is supported
          ("libxml2" ,libxml2)))
-- 
cgit v1.2.3


From 384242adf1ed9a7db92a2fd6486b0a6d3d7bd4a5 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:36:38 +0300
Subject: gnu: leptonica: Remove extra build phase.

* gnu/packages/image.scm (leptonica)[arguments]: Remove unneeded
'autogen phase.
---
 gnu/packages/image.scm | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index d4273c6fa1..ecc904db57 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -595,9 +595,6 @@ collection of tools for doing simple manipulations of TIFF images.")
     (arguments
      '(#:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'autogen
-           (lambda _
-             (invoke "sh" "autobuild")))
          (add-after 'unpack 'patch-reg-wrapper
            (lambda _
              (substitute* "prog/reg_wrapper.sh"
-- 
cgit v1.2.3


From 3192f259484c7ad167cacefd88a9829019b540b2 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:39:10 +0300
Subject: gnu: zimg: Remove extra build phase.

* gnu/packages/image.scm (zimg)[arguments]: Remove unneeded 'autogen
phase.
---
 gnu/packages/image.scm | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index ecc904db57..6928246509 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -1237,12 +1237,6 @@ ISO/IEC 15444-1).")
      `(("autoconf" ,autoconf)
        ("automake" ,automake)
        ("libtool" ,libtool)))
-    (arguments
-     '(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'autogen
-           (lambda _
-             (invoke "sh" "autogen.sh"))))))
     (synopsis "Scaling, colorspace conversion, and dithering library")
     (description "Zimg implements the commonly required image processing basics
 of scaling, colorspace conversion, and depth conversion.  A simple API enables
-- 
cgit v1.2.3


From 72bc58f85094985c79760f16beea777d1087ac32 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:41:11 +0300
Subject: gnu: dosbox: Remove extra build phase.

* gnu/packages/emulators.scm (dosbox)[arguments]: Remove unneeded
'autogen phase.
---
 gnu/packages/emulators.scm | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/gnu/packages/emulators.scm b/gnu/packages/emulators.scm
index 2d1fba2372..257591c8d3 100644
--- a/gnu/packages/emulators.scm
+++ b/gnu/packages/emulators.scm
@@ -250,12 +250,6 @@ turbo speed, networked multiplayer, and graphical enhancements.")
                (base32
                 "02i648i50dwicv1vaql15rccv4g8h5blf5g6inv67lrfxpbkvlf0"))))
     (build-system gnu-build-system)
-    (arguments
-     `(#:phases (modify-phases %standard-phases
-                  (add-after
-                   'unpack 'autogen.sh
-                   (lambda _
-                     (invoke "sh" "autogen.sh"))))))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)))
-- 
cgit v1.2.3


From 355ba48c463a786149cb6bef8396090c0d6d3498 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 7 Aug 2019 19:43:27 +0300
Subject: gnu: igt-gpu-tools: Rework custom phases.

* gnu/packages/admin.scm (igt-gpu-tools)[arguments]: Use custom 'autogen
phase to replace 'bootstrap phase.
---
 gnu/packages/admin.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index c3b1e04901..393dcb21eb 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -2606,7 +2606,7 @@ buffers.")
      `(#:tests? #f              ; many of the tests try to load kernel modules
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'autogen
+         (replace 'bootstrap
            (lambda _
              ;; Don't run configure in this phase.
              (setenv "NOCONFIGURE" "1")
-- 
cgit v1.2.3


From ec12235ce207821027971c9d5f47b660b29f5ed5 Mon Sep 17 00:00:00 2001
From: "Jakob L. Kreuze" <zerodaysfordays@sdf.lonestar.org>
Date: Wed, 7 Aug 2019 08:42:42 -0400
Subject: reconfigure: Improve tests for system activation.

* gnu/tests/reconfigure.scm (run-switch-to-system-test): Assert that
'/run/current-system' points to the activated system, and that new user
accounts specified in the operating system declaration are created.
---
 gnu/tests/reconfigure.scm | 32 +++++++++++++++++++++++++++++---
 1 file changed, 29 insertions(+), 3 deletions(-)

diff --git a/gnu/tests/reconfigure.scm b/gnu/tests/reconfigure.scm
index 3a2f0a2e53..fb11e6164e 100644
--- a/gnu/tests/reconfigure.scm
+++ b/gnu/tests/reconfigure.scm
@@ -19,8 +19,10 @@
 (define-module (gnu tests reconfigure)
   #:use-module (gnu bootloader)
   #:use-module (gnu services shepherd)
-  #:use-module (gnu system vm)
   #:use-module (gnu system)
+  #:use-module (gnu system accounts)
+  #:use-module (gnu system shadow)
+  #:use-module (gnu system vm)
   #:use-module (gnu tests)
   #:use-module (guix derivations)
   #:use-module (guix gexp)
@@ -43,7 +45,13 @@
 generation of the system profile."
   (define os
     (marionette-operating-system
-     (simple-operating-system)
+     (operating-system
+       (inherit (simple-operating-system))
+       (users (cons (user-account
+                     (name "jakob")
+                     (group "users")
+                     (home-directory "/home/jakob"))
+                    %base-user-accounts)))
      #:imported-modules '((gnu services herd)
                           (guix combinators))))
 
@@ -84,7 +92,25 @@ generation of the system profile."
 
             (test-equal "script created new generation"
               (length (system-generations marionette))
-              (1+ (length generations-prior))))
+              (1+ (length generations-prior)))
+
+            (test-assert "script activated the new generation"
+              (and (eqv? 'symlink
+                         (marionette-eval
+                          '(stat:type (lstat "/run/current-system"))
+                          marionette))
+                   (string= #$os
+                            (marionette-eval
+                             '(readlink "/run/current-system")
+                             marionette))))
+
+            (test-assert "script activated user accounts"
+              (marionette-eval
+               '(string-contains (call-with-input-file "/etc/passwd"
+                                   (lambda (port)
+                                     (get-string-all port)))
+                                 "jakob")
+               marionette)))
 
           (test-end)
           (exit (= (test-runner-fail-count (test-runner-current)) 0)))))
-- 
cgit v1.2.3


From 55e238f2ab24ce347047ebc7fd7c5eba62dac69d Mon Sep 17 00:00:00 2001
From: "Jakob L. Kreuze" <zerodaysfordays@sdf.lonestar.org>
Date: Wed, 7 Aug 2019 08:43:27 -0400
Subject: deploy: Use all machine modules when loading deployment

* guix/scripts/deploy.scm (load-source-file): Enumerate and include all
submodules of (gnu machine) when loading the provided deployment
specification.
---
 guix/scripts/deploy.scm | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/guix/scripts/deploy.scm b/guix/scripts/deploy.scm
index 52bba3f3bf..ebc99e52cc 100644
--- a/guix/scripts/deploy.scm
+++ b/guix/scripts/deploy.scm
@@ -19,6 +19,7 @@
 
 (define-module (guix scripts deploy)
   #:use-module (gnu machine)
+  #:use-module (guix discovery)
   #:use-module (guix scripts)
   #:use-module (guix scripts build)
   #:use-module (guix store)
@@ -74,7 +75,10 @@ Perform the deployment specified by FILE.\n"))
 
 (define (load-source-file file)
   "Load FILE as a user module."
-  (let ((module (make-user-module '((gnu) (gnu machine) (gnu machine ssh)))))
+  (let* ((guix-path (dirname (search-path %load-path "guix.scm")))
+         (environment-modules (scheme-modules* guix-path "gnu/machine"))
+         (module (make-user-module (append '((gnu) (gnu machine))
+                                           environment-modules))))
     (load* file module)))
 
 (define (guix-deploy . args)
-- 
cgit v1.2.3