From 8ce240fdbf05539b0d13f981b0520be5d84e0e61 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 27 Apr 2020 10:43:51 +0200 Subject: gnu: Add r-bsgenome-hsapiens-ucsc-hg38. * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d74d1cf706..66ff6114c3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -493,6 +493,30 @@ annotations for the genome of the model mouse Mus musculus.") by UCSC (hg19, February 2009) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-bsgenome-hsapiens-ucsc-hg38 + (package + (name "r-bsgenome-hsapiens-ucsc-hg38") + (version "1.4.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BSgenome.Hsapiens.UCSC.hg38" + version 'annotation)) + (sha256 + (base32 + "1ql08pvi4vv0ynvg4qs9kysw1c7s3crkgin6zxvgzqk6fray9mvi")))) + (properties + `((upstream-name . "BSgenome.Hsapiens.UCSC.hg38"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/") + (synopsis "Full genome sequences for Homo sapiens") + (description + "This package provides full genome sequences for Homo sapiens (Human) +as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-ensdb-hsapiens-v75 (package (name "r-ensdb-hsapiens-v75") -- cgit v1.2.3