From 4250b256d76f774819a77d45b98344a08794a2a4 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 16 May 2021 13:21:03 +0200 Subject: gnu: doxygen: Update to 1.9.1. * gnu/packages/patches/doxygen-1.8.17-runtests.patch, gnu/packages/patches/doxygen-test.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/documentation.scm (doxygen): Update to 1.9.1. [source](patches): Remove. [home-page]: Use HTTPS. [arguments]: Disable bibtex test with a phase instead of patch. --- gnu/local.mk | 2 - gnu/packages/documentation.scm | 14 +++-- gnu/packages/patches/doxygen-1.8.17-runtests.patch | 73 ---------------------- gnu/packages/patches/doxygen-test.patch | 60 ------------------ 4 files changed, 9 insertions(+), 140 deletions(-) delete mode 100644 gnu/packages/patches/doxygen-1.8.17-runtests.patch delete mode 100644 gnu/packages/patches/doxygen-test.patch diff --git a/gnu/local.mk b/gnu/local.mk index 2627bb62ab..d62dd6ae62 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -953,8 +953,6 @@ dist_patch_DATA = \ %D%/packages/patches/doc++-segfault-fix.patch \ %D%/packages/patches/docker-fix-tests.patch \ %D%/packages/patches/dovecot-trees-support-dovecot-2.3.patch \ - %D%/packages/patches/doxygen-test.patch \ - %D%/packages/patches/doxygen-1.8.17-runtests.patch \ %D%/packages/patches/dstat-fix-crash-when-specifying-delay.patch \ %D%/packages/patches/dstat-skip-devices-without-io.patch \ %D%/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch \ diff --git a/gnu/packages/documentation.scm b/gnu/packages/documentation.scm index ae8553436e..708d80fe48 100644 --- a/gnu/packages/documentation.scm +++ b/gnu/packages/documentation.scm @@ -203,8 +203,8 @@ markup) can be customized and extended by the user.") (define-public doxygen (package (name "doxygen") - (version "1.8.17") - (home-page "http://www.doxygen.nl/") + (version "1.9.1") + (home-page "https://www.doxygen.nl/") (source (origin (method url-fetch) (uri (list (string-append home-page "files/doxygen-" @@ -214,9 +214,7 @@ markup) can be customized and extended by the user.") ".src.tar.gz"))) (sha256 (base32 - "16dmv0gm1x8rvbm82fmjvi213q8fxqxinm75pcf595flya59ific")) - (patches (search-patches "doxygen-test.patch" - "doxygen-1.8.17-runtests.patch")))) + "1lcif1qi20gf04qyjrx7x367669g17vz2ilgi4cmamp1whdsxbk7")))) (build-system cmake-build-system) (native-inputs `(("bison" ,bison) @@ -236,6 +234,12 @@ markup) can be customized and extended by the user.") '()) #:test-target "tests" #:phases (modify-phases %standard-phases + (add-after 'unpack 'disable-bibtex-test + (lambda _ + ;; Disable test that requires bibtex to avoid a + ;; circular dependency. + (for-each delete-file-recursively + '("testing/012" "testing/012_cite.dox")))) (add-before 'configure 'patch-sh (lambda* (#:key inputs #:allow-other-keys) (substitute* "src/portable.cpp" diff --git a/gnu/packages/patches/doxygen-1.8.17-runtests.patch b/gnu/packages/patches/doxygen-1.8.17-runtests.patch deleted file mode 100644 index 0340c72448..0000000000 --- a/gnu/packages/patches/doxygen-1.8.17-runtests.patch +++ /dev/null @@ -1,73 +0,0 @@ -1.8.17 was released with a broken test runner. - -https://github.com/doxygen/doxygen/issues/7464 - -Taken from upstream: -https://github.com/doxygen/doxygen/commit/cd9dee013dc749a10bbe019c350e0e62b6635795 - -diff --git a/testing/runtests.py b/testing/runtests.py -index a4118b865..10fe50214 100755 ---- a/testing/runtests.py -+++ b/testing/runtests.py -@@ -3,6 +3,7 @@ - from __future__ import print_function - import argparse, glob, itertools, re, shutil, os, sys - import subprocess -+import shlex - - config_reg = re.compile('.*\/\/\s*(?P\S+):\s*(?P.*)$') - -@@ -28,10 +29,10 @@ def xpopen(cmd, cmd1="",encoding='utf-8-sig', getStderr=False): - return os.popen(cmd).read() # Python 2 without encoding - else: - if (getStderr): -- proc = subprocess.run(cmd1,encoding=encoding,capture_output=True) # Python 3 with encoding -- return proc.stderr -+ proc = subprocess.Popen(shlex.split(cmd1),stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding -+ return proc.stderr.read() - else: -- proc = subprocess.Popen(cmd,stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding -+ proc = subprocess.Popen(shlex.split(cmd),stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding - return proc.stdout.read() - - class Tester: -@@ -137,7 +138,7 @@ def prepare_test(self): - print('GENERATE_DOCBOOK=NO', file=f) - if (self.args.xhtml): - print('GENERATE_HTML=YES', file=f) -- # HTML_OUTPUT can also be set locally -+ # HTML_OUTPUT can also have been set locally - print('HTML_OUTPUT=%s/html' % self.test_out, file=f) - print('HTML_FILE_EXTENSION=.xhtml', file=f) - if (self.args.pdf): -@@ -184,7 +185,7 @@ def update_test(self,testmgr): - print('Non-existing file %s after \'check:\' statement' % check_file) - return - # convert output to canonical form -- data = xpopen('%s --format --noblanks --nowarning %s' % (self.args.xmllint,check_file)).read() -+ data = xpopen('%s --format --noblanks --nowarning %s' % (self.args.xmllint,check_file)) - if data: - # strip version - data = re.sub(r'xsd" version="[0-9.-]+"','xsd" version=""',data).rstrip('\n') -@@ -326,7 +327,7 @@ def perform_test(self,testmgr): - tests.append(glob.glob('%s/*.xml' % (docbook_output))) - tests.append(glob.glob('%s/*/*/*.xml' % (docbook_output))) - tests = ' '.join(list(itertools.chain.from_iterable(tests))).replace(self.args.outputdir +'/','').replace('\\','/') -- exe_string = '%s --nonet --postvalid %s' % (self.args.xmllint,tests) -+ exe_string = '%s --noout --nonet --postvalid %s' % (self.args.xmllint,tests) - exe_string1 = exe_string - exe_string += ' %s' % (redirx) - exe_string += ' %s more "%s/temp"' % (separ,docbook_output) -@@ -346,7 +347,11 @@ def perform_test(self,testmgr): - redirx=' 2> %s/temp >nul:'%html_output - else: - redirx='2>%s/temp >/dev/null'%html_output -- exe_string = '%s --path dtd --nonet --postvalid %s/*xhtml' % (self.args.xmllint,html_output) -+ check_file = [] -+ check_file.append(glob.glob('%s/*.xhtml' % (html_output))) -+ check_file.append(glob.glob('%s/*/*/*.xhtml' % (html_output))) -+ check_file = ' '.join(list(itertools.chain.from_iterable(check_file))).replace(self.args.outputdir +'/','').replace('\\','/') -+ exe_string = '%s --noout --path dtd --nonet --postvalid %s' % (self.args.xmllint,check_file) - exe_string1 = exe_string - exe_string += ' %s' % (redirx) - exe_string += ' %s more "%s/temp"' % (separ,html_output) diff --git a/gnu/packages/patches/doxygen-test.patch b/gnu/packages/patches/doxygen-test.patch deleted file mode 100644 index 1c0d4eb946..0000000000 --- a/gnu/packages/patches/doxygen-test.patch +++ /dev/null @@ -1,60 +0,0 @@ -Modify the expected outcome of test 012 so that it passes when bibtex is -not in the path, as we do not wish to add texlive as an input just for this -test. - -diff -u -r doxygen-1.8.7.orig/testing/012/citelist.xml doxygen-1.8.7/testing/012/citelist.xml ---- doxygen-1.8.7.orig/testing/012/citelist.xml 2014-04-24 23:43:34.000000000 +0200 -+++ doxygen-1.8.7/testing/012/citelist.xml 2014-04-24 23:49:43.000000000 +0200 -@@ -6,38 +6,6 @@ - - - -- -- -- -- [1] -- -- -- P.Belotti. Disjunctive cuts for non-convex MINLP. In Lee and Leyffer [4], pages 117144. -- -- -- -- [2] -- -- -- T.Berthold, S.Heinz, and S.Vigerske. Extending a CIP framework to solve MIQCPs. In Lee and Leyffer [4], pages 427444. -- -- -- -- [3] -- -- -- DonaldE. Knuth. Tex and Metafont, New Directions in Typesetting. American Mathematical Society and Digital Press, Stanford, 1979. -- -- -- -- [4] -- -- -- Jon Lee and Sven Leyffer, editors. Mixed Integer Nonlinear Programming, volume 154 of The IMA Volumes in Mathematics and its Applications. Springer, 2012. -- -- -- -- - - - -diff -u -r doxygen-1.8.7.orig/testing/012/indexpage.xml doxygen-1.8.7/testing/012/indexpage.xml ---- doxygen-1.8.7.orig/testing/012/indexpage.xml 2014-04-24 23:43:34.000000000 +0200 -+++ doxygen-1.8.7/testing/012/indexpage.xml 2014-04-24 23:44:05.000000000 +0200 -@@ -6,8 +6,8 @@ - - - -- See [3] for more info. -- Other references with cross references see [1] and [2] for more info. -+ See knuth79 for more info. -+ Other references with cross references see Be09 and BertholdHeinzVigerske2009 for more info. - - - -- cgit v1.2.3