From 0d50d0df0866430814d3b55cb305c352e796cd55 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 27 Mar 2019 15:20:48 +0100 Subject: gnu: Add r-msigdbr. * gnu/packages/cran.scm (r-msigdbr): New variable. --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 29af7ff2b6..4e6604ac83 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13066,3 +13066,34 @@ The extrafont package makes both of these things easier.") "This package provides the means to plot ggplot2 graphs in the style of the XKCD web comic.") (license license:gpl3))) + +(define-public r-msigdbr + (package + (name "r-msigdbr") + (version "6.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "msigdbr" version)) + (sha256 + (base32 + "1264j1hs74kq7hyh68vfynadfi6mdpq46qm1hnwzkzzhmbzpb9cg")))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-magrittr" ,r-magrittr) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble))) + (home-page "https://github.com/igordot/msigdbr") + (synopsis "MSigDB gene sets for multiple organisms") + (description + "This package provides the @dfn{Molecular Signatures Database} (MSigDB) +gene sets typically used with the @dfn{Gene Set Enrichment Analysis} (GSEA) +software in a standard R data frame with key-value pairs. Included are the +original human gene symbols and Entrez IDs as well as the equivalents for +various frequently studied model organisms such as mouse, rat, pig, fly, and +yeast.") + ;; The package is covered under the Expat license, but the upstream MSigDB + ;; files are made available under the Creative Commons Attribution 4.0 + ;; International license. + (license (list license:expat license:cc-by4.0)))) -- cgit v1.2.3