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* guix/build/cargo-build-system.scm (build, install): Pass the features
to cargo.
(check): Remove indirection layer for consistency with build and
install.
* guix/build-system/cargo.scm (cargo-build): New argument; pass it into
the builder.
* gnu/packages/rust-apps.scm (ripgrep): Use the new argument instead of
a custom phase.
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* gnu/system/image.scm (find-image): Make non-monadic. Add 'target'
parameter.
* gnu/tests/install.scm (run-install): Update caller,
passing (%current-target-system).
* guix/scripts/system.scm (perform-action): Likewise.
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* guix/build-system/r.scm (bioconductor-uri): Use new URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.11.
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This avoids crashes for the patch-file-names checker where a <origin> is used
for a patch, but without a value for the file-name field. This is currently
the case with the bash package.
* guix/lint.scm (check-patch-file-names): Change origin-file-name to
origin-actual-file-name.
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* guix/git-authenticate.scm (commit-signing-key): Add
#:disallowed-hash-algorithms and honor it.
(authenticate-commit)[recent-commit?]: New variable.
Pass #:disallowed-hash-algorithms to 'commit-signing-key'.
* tests/git-authenticate.scm ("signed commits, SHA1 signature"): New test.
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* guix/download.scm (%mirrors): Add more apache mirrors.
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* guix/lint.scm (check-patch-file-names)[starts-with-package-name?]: New
procedure, extracted from the existing logic. Using it, add a clause to
the match-lambda to handle origin records.
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Fixes <https://bugs.gnu.org/41796>.
Reported by Jakub Kądziołka <kuba@kadziolka.net>.
* guix/packages.scm (input-graft): Add 'output' parameter and honor it.
Add OUTPUT to the cache key.
(input-cross-graft): Likewise.
(fold-bag-dependencies): Operate on inputs instead of nodes. Turn
VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT
instead of just HEAD.
(bag-grafts): Adjust accordingly.
* tests/packages.scm ("package-grafts, dependency on several outputs"):
New test.
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Previously call-with-transaction would both retry when SQLITE_BUSY errors were
thrown and do what its name suggested (start and rollback/commit a
transaction). This changes it to do only what its name implies, which
simplifies its implementation. Retrying is provided by the new
call-with-SQLITE_BUSY-retrying procedure.
* guix/store/database.scm (call-with-transaction): no longer restarts, new
#:restartable? argument controls whether "begin" or "begin immediate" is
used.
(call-with-SQLITE_BUSY-retrying, call-with-retrying-transaction,
call-with-retrying-savepoint): new procedures.
(register-items): use call-with-retrying-transaction to preserve old
behavior.
* .dir-locals.el (call-with-retrying-transaction,
call-with-retrying-savepoint): add indentation information.
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update-or-insert can break if an insert occurs between when it decides whether
to update or insert and when it actually performs that operation. Putting the
check and the update/insert operation in the same transaction ensures that the
update/insert will only succeed if no other write has occurred in the middle.
* guix/store/database.scm (call-with-savepoint): new procedure.
(update-or-insert): use call-with-savepoint to ensure the read and the
insert/update occur within the same transaction.
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Most of our queries would fail to finalize their statements properly if sqlite
returned an error during their execution. This resolves that, and also makes
them somewhat more concise as a side-effect.
This also makes some small changes to improve certain queries where behavior
was strange or overly verbose.
* guix/store/database.scm (call-with-statement): new procedure.
(with-statement): new macro.
(last-insert-row-id, path-id, update-or-insert, add-references): rewrite to
use with-statement.
(update-or-insert): factor last-insert-row-id out of the end of both
branches.
(add-references): remove pointless last-insert-row-id call.
* .dir-locals.el (with-statement): add indenting information.
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guile-sqlite3 provides statement caching, making it unnecessary for sqlite to
keep re-preparing statements that are frequently used. Unfortunately it
doesn't quite emulate the semantics of sqlite_finalize properly, because it
doesn't cause a commit if the statement being finalized is the last "active"
statement (see https://notabug.org/guile-sqlite3/guile-sqlite3/issues/12). We
work around this by wrapping sqlite-finalize with our own version that ensures
sqlite-reset is called, which does The Right Thing™.
* guix/store/database.scm (sqlite-finalize): new procedure that shadows the
sqlite-finalize from (sqlite3).
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* guix/import/stackage.scm (latest-lts-release): Fix spelling of ‘if’.
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* guix/import/stackage.scm (latest-lts-release): Fix spelling of "included".
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* guix/store.scm (run-gc) Use buffered output port.
(export-path) Same.
(add-file-tree-to-store) Same.
(set-build-options): Same. Add explicit flush.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Previously it would trigger a wrong-number-of-arguments error for
'lset-intersection'.
* guix/git-authenticate.scm (commit-authorized-keys): Add case for when
'commit-parents' returns the empty list.
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* guix/git.scm (commit-difference): Initialize VISITED to the closure of
OLD and EXCLUDED, as written in the docstring.
* tests/git.scm ("commit-difference, excluded commits"): Adjust
accordingly.
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* guix/build/syscalls.scm (set-thread-name, thread-name): Oops, fix thinko.
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Avoid crash
Backtrace:
guix/build/syscalls.scm:405:8: In procedure prctl: Function not implemented
because of missing prctl on the Hurd.
* guix/build/syscalls.scm (set-thread-name, thread-name): Rename to ...
(set-thread-name!/linux,thread-name/linux): ...this.
(set-thread-name, thread-name): Swtich between linux implementation and or
stub.
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* guix/git-authenticate.scm (commit-authorized-keys)
[parents-have-authorizations-file?, assert-parents-lack-authorizations]:
New procedures.
Use the latter before returning DEFAULT-AUTHORIZATIONS.
* guix/git.scm (false-if-git-not-found): Export.
* guix/tests/git.scm (populate-git-repository): Add 'remove' clause.
* tests/git-authenticate.scm ("signed commits, .guix-authorizations removed"):
New test.
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Fixes <https://bugs.gnu.org/41604>
Reported by John Soo <jsoo1@asu.edu> and zimoun <zimon.toutoune@gmail.com>.
* guix/git.scm (false-if-git-not-found): New macro.
(reference-available?): Use it.
(update-cached-checkout): Use it when looking up STARTING-COMMIT.
Set RELATION to 'unrelated when OLD is #false.
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* guix/ui.scm (call-with-paginated-output-port): New procedure.
(with-paginated-output-port): New macro.
(display-search-results): Use it instead of displaying a hint.
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* guix/tests/gnupg.scm (call-with-environment-variables)
(with-environment-variables): Move to...
* guix/utils.scm: ... here.
* guix/tests/git.scm: Adjust accordingly.
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Fixes <https://bugs.gnu.org/41713>.
Reported by Mathieu Othacehe.
* guix/packages.scm (bag-grafts): Wrap 'fold-bag-dependencies' calls in
'parameterize'.
* tests/packages.scm ("package->bag, sensitivity to
%current-target-system"): New test.
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Partly fixes <https://bugs.gnu.org/41702>.
Reported by Lars-Dominik Braun <ldb@leibniz-psychology.org>.
Previously we'd potentially traverse the same sub-graph of DEPS several
times.
With this patch, command:
guix environment --ad-hoc r-learnr --search-paths
goes from 11.3s to 4.6s.
* guix/grafts.scm (reference-origin): Rename to...
(reference-origins): ... this. Change 'item' parameter to 'items'.
[lookup-derivers]: New procedure.
(cumulative-grafts)[dependency-grafts]: Change 'item' to 'items' and use
'reference-origins'.
Remove 'mapm' around 'dependency-grafts' call.
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* guix/tests/git.scm (call-with-environment-variables)
(with-environment-variables): Remove.
* guix/tests/git.scm (populate-git-repository): Add clauses for signed
commits and signed merges.
* guix/tests/gnupg.scm: New file.
* tests/git-authenticate.scm: New file.
* tests/ed25519bis.key, tests/ed25519bis.sec: New files.
* Makefile.am (dist_noinst_DATA): Add 'guix/tests/gnupg.scm'.
(SCM_TESTS): Add 'tests/git-authenticate.scm'.
(EXTRA_DIST): Add tests/ed25519bis.{key,sec}.
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* guix/git-authenticate.scm (&git-authentication-error)
(&unsigned-commit-error, &unauthorized-commit-error)
(&signature-verification-error, &missing-key-error): New condition
types.
(commit-signing-key, authenticate-commit): Raise them.
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* guix/git-authenticate.scm (load-keyring-from-reference): Remove
hard-coded "origin/". Use BRANCH-ALL instead of BRANCH-REMOTE.
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* build-aux/git-authenticate.scm (commit-signing-key)
(read-authorizations, commit-authorized-keys, authenticate-commit)
(load-keyring-from-blob, load-keyring-from-reference)
(authenticate-commits, authenticated-commit-cache-file)
(previously-authenticated-commits, cache-authenticated-commit): Remove.
* build-aux/git-authenticate.scm (git-authenticate): Pass
#:default-authorizations to 'authenticate-commits'.
* guix/git-authenticate.scm: New file, with code taken from
'build-aux/git-authenticate.scm'. Remove references to
'%historical-authorized-signing-keys' and add #:default-authorizations
parameter instead.
* Makefile.am (MODULES): Add it.
(authenticate): Depend on guix/git-authenticate.go.
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* guix/build-system/linux-module.scm (linux-module-build): Add #:make-flags.
(linux-module-build-cross): Add #:make-flags.
* guix/build/linux-module-build-system.scm (install): Pass make-flags.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
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* guix/combinators.scm (fold2): Recurse to named let loop, not fold2 itself.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
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* guix/scripts/size.scm (show-help): Mention STORE-ITEM positional argument
alternative.
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Fixes <https://bugs.gnu.org/41581>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.
* guix/build/syscalls.scm (terminal-dimension): Add EPERM to the list of
errno code for FALL-BACK.
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Fixes <https://bugs.gnu.org/41546>.
Regression introduced in 0d371c633f7308cfde2432d6119d386a5c63198c.
* guix/build/syscalls.scm (write-socket-address!)
(read-socket-address): Use 'string-contains' instead of
'string-suffix?'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Fixes <https://bugs.gnu.org/41595>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.
* guix/quirks.scm (requires-guile-2.2?): New procedure.
(%quirks): Add it.
(%bug-41214-patch): Comment.
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* guix/utils.scm (cc-for-target): New procedure.
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Now that installing Grub on raw disk-images is supported, we do not need to
rely on (gnu system vm) module.
* gnu/system/image.scm (make-system-image): Rename to ...
(system-image): ... this, and remove the compatibility wrapper.
(find-image): Turn to a monadic procedure. This will become useful when
introducing Hurd support, to be able to detect the target system.
* gnu/ci.scm (qemu-jobs): Use lower-object now that system-image returns a
file-like object.
* gnu/tests/install.scm (run-install): Ditto.
* guix/scripts/system.scm (system-derivation-for-action): Add a 'base-image'
argument,
(perform-action): adapt accordingly.
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* guix/build/compile.scm (optimization-options): Add "gnu/tests/" to
level 0.
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* guix/gexp.scm (imported-files/derivation): Pass #:substitutable? #f to
'gexp->derivation'.
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* guix/self.scm (file-append*): Add 'local-file?' case.
* guix/gexp.scm (local-file-select?): Export.
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Fixes <https://bugs.gnu.org/41527>.
Regression introduced in d03001a31a6d460b712825640dba11e3f1a53a14.
* guix/gexp.scm (lower+expand-object): When LOWERED is not a struct and
EXPAND is true, call EXPAND.
* tests/gexp.scm ("file-append, raw store item"): New test.
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* guix/scripts/pull.scm (%default-options): Add 'validate-pull'.
(%options, show-help): Add '--allow-downgrades'.
(warn-about-backward-updates): New procedure.
(guix-pull): Pass #:current-channels and #:validate-pull to
'latest-channel-instances'.
* guix/channels.scm (ensure-forward-channel-update): Add hint for
when (channel-commit channel) is true.
* doc/guix.texi (Invoking guix pull): Document '--allow-downgrades'.
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* guix/channels.scm (latest-channel-instance): Add #:starting-commit and
pass it to 'update-cached-checkout'. Return the commit relation as a
second value.
(ensure-forward-channel-update): New procedure.
(latest-channel-instances): Add #:current-channels and #:validate-pull.
[current-commit]: New procedure.
Pass #:starting-commit to 'latest-channel-instance'. When the returned
relation is true, call VALIDATE-PULL.
(latest-channel-derivation): Add #:current-channels and #:validate-pull.
Pass them to 'latest-channel-instances*'.
* tests/channels.scm ("latest-channel-instances #:validate-pull"): New
test.
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* guix/git.scm (update-cached-checkout): Add #:starting-commit
parameter. Call 'commit-relation' when #:starting-commit is true.
Always return the relation or #f as the third value.
(latest-repository-commit): Adjust accordingly.
* guix/import/opam.scm (get-opam-repository): Likewise.
* tests/channels.scm ("latest-channel-instances includes channel dependencies")
("latest-channel-instances excludes duplicate channel dependencies"):
Update mock of 'update-cached-checkout' accordingly.
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* guix/channels.scm (latest-channel-instances): Remove
'previous-channels' argument. Introduce 'loop' and use it.
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* guix/git.scm (commit-relation): New procedure.
* tests/git.scm ("commit-relation"): New test.
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* guix/scripts/package.scm (process-query): List installed multiple profiles.
* tests/guix-package-net.sh: Test it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/upstream.scm (update-package-source): Use 'origin-hash' instead
of 'origin-sha256'.
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* guix/lint.scm (check-archival): Use 'origin-hash' instead of
'origin-sha256', removing hard-coded "sha256".
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