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* | import cran: Add predicate for Bioconductor experiment packages.Ricardo Wurmus2017-05-16
| | | | | | | | * guix/import/cran.scm (bioconductor-experiment-package?): New variable.
* | import cran: Exclude experiment packages in predicate "bioconductor-package?".Ricardo Wurmus2017-05-16
| | | | | | | | | | * guix/import/cran.scm (bioconductor-package?): Exclude experiment packages, because they cannot be updated with the default bioconductor updater.
* | import cran: Fetch DESCRIPTION files from Github mirror.Ricardo Wurmus2017-05-16
| | | | | | | | | | | | | | | | | | * guix/import/cran.scm (%bioconductor-svn-url): Remove variable. (bioconductor-mirror-url): New procedure. (fetch-description): Take a REPOSITORY symbol instead of a BASE-URL string. (cran->guix-package): Pass REPOSITORY symbol to "fetch-description". (latest-cran-release, latest-bioconductor-release): Adjust accordingly. (bioconductor-package?): Update comment about SVN.
* | build-system/asdf: Handle tests defined in external systems.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | | | * guix/build-system/asdf.scm (asdf-build): Add a #:test-asd-file argument. [builder]: Pass it to the build system. (package-with-build-system)[transform]: Strip it from source systems' arguments. * guix/build/asdf-build-system.scm (check): Pass the fully qualified path to it on to the test-system procedure. * guix/build/lisp-utils.scm (test-system): Load the file, or otherwise one of the often used names for it, before running the tests. Adjust the docstring accordingly.
* | build-system/asdf: Retain references to source files for binary outputs.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | In support of long-running programs in which the users would like to be able to jump to the source of a definition of any of the dependencies (itself included) of the program. * guix/build/asdf-build-system.scm (library-outputs): Move from here ... * guix/build/lisp-utils.scm (library-outputs): ... to here. (build-program): Accept dependency-prefixes argument, to allow the caller to specify references which should be retained. Default to the library's output. (build-image): Likewise. (generate-executable): Likewise. * gnu/packages/lisp.scm (sbcl-stumpwm+slynk, sbcl-slynk, sbcl-stumpwm): Adjust accordingly to the new interface. (sbcl-stumpwm+slynk)[native-inputs]: Move to ... [inputs]: ... here.
* | build-system/asdf: Simplify the use of lisp-eval-program.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Accept a list of statements, each run within its own `--eval' argument. This allows statements to use reader package namespacing after a package has been loaded. * guix/build/lisp-utils.scm (spread-statements): New procedure. (lisp-invoke): Rename to ... (lisp-invocation): ... this. Use spread-statements. Change interface to accept list of statements instead of a single statement. (asdf-load-all-systems): Simplify returned statements. (compile-system): Simplify the program passed to `lisp-eval-program'. (test-system): Likewise. (generate-executable-for-system): Likewise. Accept the full symbol describing the asdf operation to use. (generate-executable): Document the change. (build-program, build-image): Use the new interface.
* | build-system/asdf: Handle unusually-named systems.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | * guix/build/lisp-utils.scm (valid-char-set): New variable. (normalize-string): New procedure. (compiled-system): Truncate the name of a system which contains slashes. (generate-system-definition, make-asd-file): Use `normalize-string' to alter the names of the created system and its dependencies. * guix/build/asdf-build-system.scm (create-asd-file): Normalize the name of the asd file being created.
* | build-system/asdf: Always pre-load the system's definition file.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | * guix/build-system/asdf.scm (asdf-build)[builder]: Pass a default `#:asd-file' argument to the build procedure, using the system's name. * guix/build/asdf-build-system.scm (build, check): Adjust to assume that `asd-file' will always be a string. * guix/build/lisp-utils.scm (compile-system, system-dependencies) (test-system): Likewise.
* | build-system/asdf: Pass the system name as an argument to the builder.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | * guix/build-system/asdf.scm (asdf-build): Use the user-defined system name, or calculate it from the package's full name. [builder]: Pass the value along to the build procedure. (package-with-build-system): Remove #:asd-system-name from source packages' arguments. * guix/build/asdf-build-system.scm: Adjust accordingly. * guix/build/lisp-utils.scm (remove-lisp-from-name): Delete variable.
* | build-system/asdf: Parameterize the lisp type and implementation globally.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | | | | | * guix/build-system/asdf.scm (asdf-build)[builder]: Parameterize %lisp-type and %lisp before invoking the build procedure. Don't pass #:lisp-type as an argument to said procedure. * guix/build/asdf-build-system.scm: Adjust accordingly. (source-install-prefix): Rename to %lisp-source-install-prefix. * guix/build/lisp-utils.scm: Adjust accordingly. (%lisp-type): New parameter. (bundle-install-prefix): Rename to %bundle-install-prefix. * gnu/packages/lisp.scm: Adjust accordingly.
* | build-system/asdf: Make #:lisp a package argument.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | | | * guix/build-system/asdf.scm (lower): Change argument name to `lisp-type'. (asdf-build): Change argument name to `lisp-type'. Remove `lisp' as an argument to the returned procedure. Change the argument passed to build phases to `lisp-type'. * guix/build/asdf-build-system.scm (copy-source, build, check) (create-asd-file, symlink-asd-files, cleanup-files, strip): Respect `lisp-type` argument. * gnu/packages/lisp.scm (sbcl-stumpwm, sbcl-stumpwm+slynk): Likewise.
* | build-system/asdf: Keep ecl's generated archive files.Andy Patterson2017-05-16
| | | | | | | | | | | | This may be necessary to produce programs or images with ecl. * guix/build/asdf-build-system.scm (cleanup-files): Don't delete .a files.
* | build-system/asdf: Don't rename inputs.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | | | | | | | * guix/build-system/asdf.scm (package-with-build-system)[transform]: Use updated `new-inputs' procedure for inputs and native-inputs. <rewrite>: Don't rename inputs. <new-propagated-inputs>: Draw from package-inputs and package-native-inputs for source packages. Use the original package's propagated-inputs otherwise. <new-inputs>: Convert into a function to be used to transform inputs and native-inputs. * gnu/packages/lisp.scm (sbcl-fiveam, sbcl-bordeaux-threads) (sbcl-flexi-streams, sbcl-cl-ppcre, sbcl-stumpwm, sbcl-slynk-arglists) (sbcl-slynk-fancy-inspector): Don't prefix input names.
* | build-system/asdf: Use asdf to determine dependencies.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | | | | | | | This removes the need for conventions to determine which inputs are run-time dependencies, and also the need to specify "special" dependencies. * guix/build/lisp-utils.scm (patch-asd-file, lisp-dependencies) (wrap-perform-method): Remove them. (inputs->asd-file-map, system-dependencies, generate-system-definition) (generate-dependency-links, make-asd-file): New procedures. (lisp-eval-program): Add an error if no lisp matches. (compile-system): Don't use asdf's in-built asd-file generator.
* | build-system/asdf: Make it possible to use "lib" as the build output.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | | | * guix/build/asdf-build-system.scm (library-output): New procedure. (copy-source, build, check, patch-asd-files, symlink-asd-files) (cleanup-files): Use it. (copy-files-to-output): Rework to take an output instead of an outputs and string pair. (install, copy-source): Use the new method.
* | build-system/asdf: Rename %install-prefix to %source-install-prefix.Andy Patterson2017-05-16
| | | | | | | | | | | | | | | | * guix/build/lisp-utils.scm (%install-prefix): Rename to %source-install-prefix. (build-install-prefix): Use it. * guix/build/asdf-build-system.scm (source-install-prefix) (%system-install-prefix, source-directory, copy-source): Likewise.
* | scripts: system: Display bootloader name in "list-generations".Mathieu Othacehe2017-05-16
| | | | | | | | | | * guix/scripts/system.scm (display-system-generation): Display bootloader name.
* | scripts: system: Adapt "switch-generation" to new bootloader API.Mathieu Othacehe2017-05-16
| | | | | | | | | | | | | | | | | | * guix/scripts/system.scm (reinstall-grub): Rename to reinstall-bootloader. Read boot-device and boot-type from parameters file to be able to restore the correct bootloader on specified device. Factorize bootloader installation code by calling install-bootloader. (system-bootloader-name): New procedure. (switch-to-system-generation): Adapt.
* | scripts: system: Adapt "init" to new bootloader API.Mathieu Othacehe2017-05-16
| | | | | | | | | | | | | | * guix/scripts/system.scm (install): Pass installer a new argument. Rename other arguments. Call install-bootloader instead of install-grub*. (perform-action): Adapt.
* | scripts: system: Adapt "reconfigure" to new bootloader API.Mathieu Othacehe2017-05-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * guix/scripts/system.scm (install-grub*): Rename to install-bootloader. Use keys to pass arguments. Pass a new argument, "installer-drv" which is a script in store dealing with bootloader-specific install actions. Also call "install-boot-config" to install the bootloader config file. (install-bootloader-derivation): New procedure. It returns a derivation that builds a file containing "install-procedure" gexp. (perform-action): Build install-proc derivation and call install-bootloader with the resulting file. Stop adding GRUB to PATH as bootloaders are called in install-proc with direct store paths.
* | bootloader: Add extlinux support.Mathieu Othacehe2017-05-16
|/ | | | | | | | | | | | | | | * gnu/bootloader.scm: New file. * gnu/bootloader/extlinux.scm: New file. * gnu/bootloader/grub.scm: New file. * gnu/local.mk: Build new files. * gnu/system.scm: Adapt to new bootloader api. * gnu/scripts/system.scm: Adapt to new bootloader api. * gnu.scm: Remove (gnu system grub) and replace by (gnu bootloader) and (gnu bootloader grub) modules. * gnu/system/grub.scm: Moved content to gnu/bootloader/grub.scm. * gnu/system/vm: Replace (gnu system grub) module by (gnu bootloader). * gnu/tests.scm: Ditto. * gnu/tests/nfs.scm: Ditto.
* ui: Disable Guile deprecation warnings by default.Ludovic Courtès2017-05-16
| | | | | * guix/ui.scm (initialize-guix): Call (debug-disable 'warn-deprecated) when "GUILE_WARN_DEPRECATED" is not set.
* utils: 'compressed-file?' matches ".lzma" files.Ludovic Courtès2017-05-15
| | | | * guix/utils.scm (compressed-file?): Add "lzma" to the list.
* licenses: Add EDL 1.0.Ricardo Wurmus2017-05-15
| | | | * guix/licenses.scm (edl1.0): New variable.
* bournish: 'ls' adjusts the column width depending on the entries.Ludovic Courtès2017-05-13
| | | | | | * guix/build/bournish.scm (display-tabulated): Remove #:columns and #:column-width parameters. Add #:terminal-width and #:column-gap. Compute COLUMN-WIDTH and COLUMNS.
* bournish: 'ls' lists directory contents.Ludovic Courtès2017-05-13
| | | | | | | Suggested by Ricardo Wurmus. * guix/build/bournish.scm (ls-command-implementation): When FILE is a directory, list its contents rather than FILE itself.
* import: pypi: Robustify latest-release.Mathieu Othacehe2017-05-13
| | | | | * guix/import/pypi.scm (latest-release): Check if pypi-fetch has failed. If so return #f, else construct the <upstream-source>.
* import: cran: Robustify cran-package?.Mathieu Othacehe2017-05-13
| | | | | | | | | | | | * guix/import/cran.scm (package->upstream-name): Return #f if url start and end index could not be determined. (cran-package?): Check if the upstream-name can be extracted from given package. * tests/cran.scm: Add "r-minimal is not a cran package" to make sure that r-minimal is not detected as a cran package. This fixes a failure of guix refresh on r-minimal because no upsteam-name can be determined from ".../R-version.tar.gz" uri.
* scripts: Do not create the config directory.Ludovic Courtès2017-05-13
| | | | | | | | | This fixes runs of 'guix package' and 'guix system' tests in environments where $HOME is read-only. * guix/ui.scm (config-directory): Add #:ensure? parameter and honor it. * guix/scripts.scm (warn-about-old-distro): Pass #:ensure? #f to 'config-directory'.
* substitute: Honor 'Cache-Control' on 404 responses.Ludovic Courtès2017-05-11
| | | | | | * guix/scripts/substitute.scm (cached-narinfo): When VALUE is #f, use the TTL that is read instead of %NARINFO-NEGATIVE-TTL. (cached-narinfo-expiration-time): Likewise.
* publish: Advertise a short TTL for "baking" 404s.Ludovic Courtès2017-05-11
| | | | | | | * guix/scripts/publish.scm (not-found): Add #:phrase and #:ttl parameters and honor them. * tests/publish.scm ("with cache"): Check the 'cache-control' header on of the 404 response.
* graph: Add Cypher backend.Roel Janssen2017-05-11
| | | | | * guix/graph.scm (%cypher-backend): New variable. * doc/guix.texi: Add documentation for the Cypher backend of 'guix graph'.
* scripts: Fix singular/plural message mismatch.Ludovic Courtès2017-05-10
| | | | | * guix/scripts.scm (warn-about-old-distro): Swap singular and plural forms in 'N_' call.
* build-system: Add package-with-ocaml4.01.Ben Woodcroft2017-05-10
| | | | | | * guix/build-system/ocaml.scm (default-ocaml4.01, default-ocaml4.01-findlib, package-with-explicit-ocaml, package-with-ocaml4.01, strip-ocaml4.01-variant): New variables.
* scripts: Warn about old distro.Ludovic Courtès2017-05-10
| | | | | | | | | | | Fixes <http://bugs.gnu.org/25852>. Suggested by Mark H Weaver <mhw@netris.org>. * guix/scripts.scm (%distro-age-warning): New variable. (warn-about-old-distro): New procedure. * guix/scripts/package.scm (process-actions): Call 'warn-about-old-distro'. * guix/scripts/system.scm (process-action): Likewise.
* ui: 'string->duration' correctly handles hours.Ludovic Courtès2017-05-10
| | | | | * guix/ui.scm (string->duration): Add missing '=>' for hours. * tests/ui.scm ("duration, 2 hours"): New test.
* guix: Add java-utils.Hartmut Goebel2017-05-10
| | | | | | | | * guix/build/java-utils.scm: New file. * guix/build-system/ant.scm: Use it. * Makefile.am (MODULES): Add it. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* ant-build-system: Add default "check" target.Ricardo Wurmus2017-05-10
| | | | | | | | * guix/build-system/ant.scm (ant-build): Change default test target to "check"; add "test-dir" argument. * guix/build/ant-build-system.scm (default-build.xml): Add "test-dir" argument; add ant targets "compile-tests" and "check". (configure): Add "test-dir" argument; pass it to "default-build.xml".
* ant-build-system: Allow specifying source directory.Hartmut Goebel2017-05-10
| | | | | | | | | | | * guix/build-system/ant.scm (ant-build), guix/build/ant-build-system.scm (default-build.xml): Add parameter source-dir. * guix/build/ant-build-system.scm (configure): Pass source-dir on to default-build.xml. * doc/guix.texi (Build Systems): Document it. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* pull: Build package modules without optimizations on Guile 2.2.Ludovic Courtès2017-05-09
| | | | | | | | * guix/build/pull.scm (%default-optimizations) (%lightweight-optimizations): New variables. (optimization-options): New procedure. Taken from build-aux/compile-all.scm. (build-guix): Pass it to 'compile-file'.
* pull: Build with the matching Guile major version.Ludovic Courtès2017-05-09
| | | | | | | | | | | | | | | | | | Previously, 'guix pull' would always build with Guile 2.0. Now it builds with the Guile that matches (effective-version). * build-aux/build-self.scm (false-if-wrong-guile) (package-for-current-guile): New procedures. (guile-json, guile-ssh): Use it. (guile-for-build): New procedure. (build): Use (effective-version) instead of the hard-coded "/2.0". Add (guix modules) closure to #:modules argument. Pass \#:guile-for-build argument to 'gexp->derivation'. * guix/build/pull.scm (depends-on-guile-ssh?, all-scheme-files): New procedures. (build-guix): Show the output of (version). Use the above procedures. Filter out files that match 'depends-on-guile-ssh?' when (ssh session) is missing.
* pull: Use 'with-store'.Ludovic Courtès2017-05-09
| | | | | * guix/scripts/pull.scm (guix-pull): Remove call to 'open-connection'. Use 'with-store' instead.
* pull: Honor the standard build options.Ludovic Courtès2017-05-09
| | | | | | | | | | | | | Reported by Niall Dooley <dooleyn@gmail.com> in <https://lists.gnu.org/archive/html/help-guix/2017-05/msg00038.html>. * guix/scripts/pull.scm (%options): Add --dry-run and all of %STANDARD-BUILD-OPTIONS. (show-help): Add call to 'show-build-options-help'. (%default-options): Add 'system', 'substitutes?', 'graft?', 'max-silent-time', and 'verbosity'. (guix-pull)[parse-options]: Remove. Use 'parse-command-line' instead. Honor --dry-run.
* git-download: Fix 'git-predicate' file membership.Ludovic Courtès2017-05-07
| | | | | | | | | Previously, it the predicate would return #t for "m4/ChangeLog" if "ChangeLog" (in the top-level directory) was in FILES. This commit fixes the ambiguity. * guix/git-download.scm (git-predicate): Add 'inodes' variable. Use it to determine file membership.
* store: Use 'TCP_NODELAY' when connecting to a daemon over PF_INET.Ludovic Courtès2017-05-07
| | | | | * guix/store.scm (open-inet-socket): Add 'cond-expand' form to define 'TCP_NODELAY' when needed. Add call to 'setsockopt' after 'connect'.
* Revert "guix: git: Add new module."Leo Famulari2017-05-05
| | | | | | | | | This reverts commit a70b784708fb5e1b78430aa793d89ca04bc641a8. Commit a70b784708f caused `guix pull` to fail: ERROR: In procedure scm-error: ERROR: no code for module (git)
* guix: git: Add new module.Mathieu Othacehe2017-05-05
| | | | | | * guix/git.scm: New file. * configure.ac: Check for (guile git). * Makefile.am: Build guix/git.scm if (guile git) is available.
* scripts: Remove profile-grub-entries.Danny Milosavljevic2017-05-05
| | | | * guix/scripts/system.scm (profile-grub-entries): Delete variable.
* system: grub: Use boot-parameters instead of menu-entry where possible.Danny Milosavljevic2017-05-05
| | | | | | | | | * gnu/system/grub.scm (boot-parameters->menu-entry): New variable. (grub-configuration-file): Use boot-parameters instead of menu-entry where possible. * guix/scripts/system.scm (profile-boot-parameters): Update docstring. (reinstall-grub): Use profile-boot-parameters. (perform-action): Use profile-boot-parameters.
* scripts: Make boot-parameters label include generation number and time.Danny Milosavljevic2017-05-05
| | | | | * guix/scripts/system.scm (system->boot-parameters): Make label include generation number and time.
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