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* guix: Upgrade to Bioconductor 3.10.Ricardo Wurmus2019-12-15
| | | | | * guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10. * guix/import/cran.scm (%bioconductor-version): Same.
* gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt2019-12-05
| | | | | | | | | | | | | | | | | stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
* Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to ↵Tobias Geerinckx-Rice2019-12-05
| | | | | | | javascript and stumpwm to wm." This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which still breaks ‘guix pull’.
* Revert "build-system/linux-module: Accept a #:make-flags keyword."Efraim Flashner2019-12-05
| | | | | | I should've tested this better before pushing the commit. This reverts commit fabd4900d8fb739a55e2dff76dee3a29b2a90bb1.
* gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt2019-12-05
| | | | | | | | | | | | | | | | | stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
* build-system/linux-module: Accept a #:make-flags keyword.Tobias Geerinckx-Rice2019-12-04
| | | | | | | | Fixes bug#37882. * guix/build-system/linux-module.scm (linux-module-build): Accept a MAKE-FLAGS argument. <builder>: Pass it on.
* guix: Add the 'qt' build system.Hartmut Goebel2019-12-01
| | | | | | * guix/build-system/qt.scm, guix/build/qt-build-system.scm: New files. * Makefile.am (MODULES): Add them. * doc/guix.texi (Buiild systems): Add the new build system.
* build-system/asdf: Fix package transform.Guillaume Le Vaillant2019-10-18
| | | | | | * guix/build-system/asdf.scm (package-with-build-system): [find-input-package]: New function. [rewrite]: Use it.
* build-system/gnu: 'package-with-explicit-inputs' uses 'package-mapping'.Ludovic Courtès2019-10-14
| | | | | | | * guix/build-system/gnu.scm (package-with-explicit-inputs): Rename to... (package-with-explicit-inputs/deprecated): ... this. (package-with-explicit-inputs*): New procedure. (package-with-explicit-inputs): Define as a 'case-lambda*'.
* gnu: Add nsis-x86_64 and nsis-i686.Carl Dong2019-10-11
| | | | | | | | | | | | | | * guix/build-system/scons.scm (scons-build): Add build-targets and install-targets parameters. * guix/build/scons-build-system.scm (build, install): Adjust accordingly. * doc/guix.texi (Build Systems): Document it. * gnu/packages/installers.scm: New file, (make-nsis): New procedure, (nsis-x86_64, nsis-i686): New variables. * gnu/packages/patches/nsis-env-passthru.patch: New file. * gnu/local.mk (dist_patch_DATA, GNU_SYSTEM_MODULES): Adjust accordingly.
* Merge branch 'master' into core-updatesMark H Weaver2019-09-06
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| * build-system/julia: Avoid module cycles.Marius Bakke2019-09-05
| | | | | | | | | | * guix/build-system/julia.scm: Remove unused imports. (lower)[julia]: Default to (DEFAULT-JULIA).
| * build-system/julia: Fix syntax error.Ricardo Wurmus2019-09-04
| | | | | | | | * guix/build-system/julia.scm: Fix invalid module reference.
| * build: Add julia-build-system.nixo2019-09-04
| | | | | | | | | | | | | | | | | | * guix/build/julia-build-system.scm: New file. * guix/build-system/julia.scm: New file. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document julia-build-system. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
| * import: crate: Separate crates.io API from actual conversion.Ludovic Courtès2019-09-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This provides a clean separation between bindings to the https://crates.io/api/v1 API and actual conversion to Guix package sexps. As a side-effect, it fixes things like "guix import blake2-rfc", "guix refresh -t crates", etc. * guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>): New record types. (lookup-crate, crate-version-dependencies): New procedures. (crate-fetch): Remove. (crate->guix-package): Rewrite to use the new API. (latest-release): Likewise. * guix/build-system/cargo.scm (%crate-base-url): New variable. * tests/crate.scm (test-crate): Update accordingly. fixlet
* | Merge branch 'master' into core-updatesMark H Weaver2019-08-22
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| * build-system/r: bioconductor-uri: Take optional package type.Ricardo Wurmus2019-08-16
| | | | | | | | | | * guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to return annotation or experiment URLs.
* | Merge branch 'master' into core-updatesMarius Bakke2019-08-13
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| * build-system/texlive: Add texlive-origin.Ricardo Wurmus2019-07-23
| | | | | | | | * guix/build-system/texlive.scm (texlive-origin): New procedure.
* | Merge branch 'master' into core-updatesLudovic Courtès2019-07-17
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| * build/cargo-build-system: Use bundled json instead of guile-json.Robert Vollmert2019-07-16
| | | | | | | | | | | | | | | | | | * guix/build/cargo-build-system.scm: Use (gnu build json) instead of (json parser). * guix/build-system/cargo.scm: Import (gnu build json) instead of (json parser). Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
| * Revert "guix: node-build-system: Use guile-json instead of a custom parser."Julien Lepiller2019-07-14
| | | | | | | | | | | | | | | | | | The effect of this change was to import the (json parser) from the host side into the build side. The solution here would be to do the equivalent of ‘with-extensions’ for gexps. Since we don't use gexps for build systems just yet, revert this for now. This reverts commit 8eb0ba532ebbebef23180e666e0607ea735f9c1a.
| * guix: node-build-system: Use guile-json instead of a custom parser.Julien Lepiller2019-07-14
| | | | | | | | | | | | | | * guix/build/json.scm: Remove file. * Makefile.am: Remove it. * guix/build/node-build-system.scm: Use (json parser) instead of (guix build json). * guix/build-system/node.scm: Idem.
| * build: Add node-build-system.Jelle Licht2019-07-14
| | | | | | | | | | | | | | | | | | | | * guix/build/node-build-system.scm: New file. * guix/build-system/node.scm: New file. * guix/build/json.scm: New file. * doc/guix.texi: Document it. * Makefile.am: Added new files. Co-Authored-By: Julien Lepiller <julien@lepiller.eu>
* | build-system/meson: Enable compiler optimizations.Marius Bakke2019-07-07
| | | | | | | | * guix/build-system/meson.scm (meson-build)[#:build-type]: Set to 'debugoptimized'.
* | Merge branch 'staging' into core-updatesMarius Bakke2019-07-02
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| * import: pypi: Update the host URI.Maxim Cournoyer2019-07-02
| | | | | | | | | | * guix/build-system/python.scm (pypi-uri): Update the host URI to "files.pythonhosted.org".
* | Merge branch 'master' into core-updatesLudovic Courtès2019-06-13
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| * build-system/cargo: Don't copy source as an output.Ivan Petkov2019-06-11
| | | | | | | | | | | | | | | | | | * guix/build-system/cargo.scm: (cargo-build)[build-expression->derivation]: Don't add "src" output. * guix/build/cargo-build-system.scm: (install-source): Delete it. (%standard-phases): Delete 'install-source. Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
| * build-system/cargo: Expand transitive crate sources.Ivan Petkov2019-06-11
| | | | | | | | | | | | | | | | | | | | | | * guix/build/cargo: (package-cargo-inputs): Add it. (package-cargo-development-inputs): Add it. (crate-closure): Add it. (expand-crate-sources): Add it. (lower)[private-keywords]: Add #:cargo-inputs and [bag]: Use expand-crate-sources to augment build-inputs. Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
| * build-system/guile: Add #:not-compiled-file-regexp.Ludovic Courtès2019-06-02
| | | | | | | | | | | | | | * guix/build/guile-build-system.scm (build): Add #:not-compiled-file-regexp and honor it. * guix/build-system/guile.scm (guile-build): Likewise. (guile-cross-build): Likewise.
* | Merge branch 'staging' into core-updatesMarius Bakke2019-05-25
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| * guix: Update to Bioconductor 3.9.Ricardo Wurmus2019-05-06
| | | | | | | | | | * guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.9.
* | Merge branch 'master' into core-updatesMarius Bakke2019-05-01
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| * gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependentJulien Lepiller2019-04-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | packages. This fixes <https://bugs.gnu.org/27462>. * gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir) (ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit) (ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith) (ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext) (ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result) (ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv) (ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring) (ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl) (ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath) (ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar) (ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64) (ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis) (ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib) (ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver) (ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv) (ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare) (ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib) (ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv) (ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate) (ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value) (ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail) (ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message) (ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re) (ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel) (ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core) (ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async) (ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp) (ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi) (ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables. * guix/build-system/ocaml.scm (default-ocaml4.02) (default-ocaml4.02-findlib, package-with-ocaml4.02) (strip-ocaml4.02-variant): Remove variables.
| * build-system/linux-module: Support module source versioning.Danny Milosavljevic2019-04-12
| | | | | | | | | | | | | | | | * guix/build-system/linux-module.scm (make-linux-module-builder) [native-inputs]: Add linux. [arguments]<#:phases>[install]: Install "System.map" and "Module.symvers". * guix/build/linux-module-build-system.scm (configure): Delete procedure. (%standard-phases): Delete "configure" phase.
| * Add (guix build-system linux-module).Danny Milosavljevic2019-04-11
| | | | | | | | | | | | | | * guix/build/linux-module-build-system.scm: New file. * guix/build-system/linux-module.scm: New file. * doc/guix.texi (Build Systems): Document it. * Makefile.am (MODULES): Add them.
| * build-system/cargo: refactor phases to successfully buildIvan Petkov2019-04-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * guix/build-system/cargo.scm (%cargo-build-system-modules): Add (json parser). (cargo-build): [vendor-dir]: Define flag and pass it to builder code. [cargo-test-flags]: Likewise. [skip-build?]: Likewise. * guix/build/cargo-build/system.scm (#:use-module): use (json parser). (package-name->crate-name): Delete it. (manifest-targets): Add it. (has-executable-target?): Add it. (configure): Add #:vendor-dir name and use it. Don't touch Cargo.toml. Don't symlink to duplicate inputs. Remove useless registry line from cargo config. Define RUSTFLAGS to lift lint restrictions. (build): Add #:skip-build? flag and use it. (check): Likewise. Add #:cargo-test-flags and pass it to cargo. (install): Factor source logic to install-source. Define #:skip-build? flag and use it. Only install if executable targets are present. (install-source): Copy entire crate directory not just src. [generate-checksums] pass dummy file for unused second argument. (%standard-phases): Add install-source phase. Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
| * guix: dune-build-system: Add a package parameter.Julien Lepiller2019-03-23
| | | | | | | | | | | | * guix/build-system/dune.scm: Add a package parameter. * guix/build/dune.scm (build, test, install): Use it. * doc/guix.texi: Document it.
* | Merge branch 'staging' into core-updatesMarius Bakke2019-03-23
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| * build: Add rakudo-build-system.Efraim Flashner2019-03-23
| | | | | | | | | | | | | | * guix/build-system/rakudo.scm, guix/build/rakudo-build-system.scm: New files. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build System): Document it.
| * build-system/meson: Add #:allowed-references and #:disallowed-references.Marius Bakke2019-03-21
| | | | | | | | | | * guix/build-system/meson.scm (meson-build): Add support for #:allowed-references and #:disallowed-references.
| * build-system/glib-or-gtk: Support #:disallowed-references.Ludovic Courtès2019-03-15
| | | | | | | | | | * guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Add #:disallowed-references and honor it.
| * build-system/go: Build with a filesystem union of Go dependencies.Leo Famulari2019-03-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This basically changes (guix build-system go) so that instead of looking up its dependencies in a list of directories in $GOPATH, all the Go dependencies are symlinked into a single directory. Fixes <https://bugs.gnu.org/33620>. * guix/build/go-build-system.scm (setup-go-environment): New variable. (setup-environment, install-source): Remove variables. (unpack): Unpack the source relative to $GOPATH. (install): Do not install the compiled objects in the 'pkg' directory. Install the source code in this phase, and only install the source of the package named by IMPORT-PATH. * doc/guix.texi (Build Systems): Adjust accordingly. * gnu/packages/docker.scm (docker): Import (guix build union) on the build side and adjust to build phase name changes in (guix build-system go). * gnu/packages/shellutils.scm (direnv): Likewise. * gnu/packages/databases.scm (mongo-tools)[arguments]: Set '#:install-source #f'. * gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts' phase after the 'install' phase.
* | cmake: Generate documentation.Maxim Cournoyer2019-03-20
|/ | | | | | | | | | | | | | | | | | | | | | | To prevent complicating the dependencies of a core tool, a new variant, CMAKE-MINIMAL is introduced and the CMake build system is configured to use it by default. The regular CMAKE package gains a manpage, info manual as well as HTML documentation. Fixes issue #33497 (https://bugs.gnu.org/33497). * gnu/packages/cmake.scm (gnu): Use modules (gnu packages python-xyz), (gnu packages texinfo) and (srfi srfi-1). (cmake-minimal): Rename the original cmake variable to this. [phases]{configure}: Extract the configure script arguments to... [configure-flags]: here. [properties]: Set the HIDDEN? property to #t. (cmake): New variable, which inherits from CMAKE-MINIMAL. [phases]{move-html-doc}: Add phase. [native-inputs]: Add PYTHON-SPHINX and TEXINFO. [outputs]: Add the "doc" output. [properties]: Clear the inherited HIDDEN? property. * guix/build-system/cmake.scm (default-cmake): Use CMAKE-MINIMAL instead of CMAKE.
* gnu: rust: Factor out "cargo-utils" from "cargo-build-system".Ivan Petkov2019-03-01
| | | | | | | | | | | | | | | | | | * guix/build/cargo-utils.scm: New file. * Makefile.am (MODULES): Add it. * guix/build-system/cargo.scm (%cargo-utils-modules): New variable. (%cargo-build-system-modules): Use it. * guix/build/cargo-build-system.scm (file-sha256, generate-checksums): Move from here... * guix/build/cargo-utils.scm: ...to here. * gnu/packages/rust.scm (rust-1.19.0)[arguments]<#:imported-modules>: Use %cargo-utils-modules. <#:phases>[patch-cargo-checksums]: Use (guix build cargo-utils). * gnu/packages/gnuzilla.scm (icecat): [arguments]<#:imported-modules>: Use %cargo-utils-modules. <#phases>[patch-cargo-checksums]: import (guix build cargo-utils). Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* guix: scons: Fix module reference.Ricardo Wurmus2019-01-15
| | | | | * guix/build-system/scons.scm (default-scons): Find "scons" package in (gnu packages python-xyz) instead of (gnu packages python).
* gnu: Update texlive packages.Ricardo Wurmus2019-01-10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to texlive-2018.2, revision 49435. * gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data, texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname, texlive-fonts-cm, texlive-tex-plain, texlive-latex-base, texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages, texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls, texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox, texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois, texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar, texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip, texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex, texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script, texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update hashes. (texlive-latex-fontspec)[arguments]: Remove custom build target. (texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error". (texlive-latex-xkeyval): New variable. (texlive-latex-pstool)[source]: Fetch from new location. [build-system]: Use trivial-build-system. [arguments]: Write simple builder. [propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and texlive-latex-xkeyval. [synopsis]: Fix typo.
* build-system/asdf: 'package-with-build-system' accesses inputs lazily.Ludovic Courtès2019-01-09
| | | | | | | | | | | | Fixes a bug whereby we would, at the top-level (while evaluation lisp.scm package definitions), attempt to access package inputs. Because of circular dependencies, this could lead to unbound variables as reported by Arun Isaac <arunisaac@systemreboot.net> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=33801#56>. * guix/build-system/asdf.scm (package-with-build-system)[transform] (new-propagated-inputs): Turn into a procedure. Adjust user accordingly.
* build: Add dune-build-system.Julien Lepiller2018-12-18
| | | | | | | | | | | * guix/build/dune-build-system.scm, guix/build-system/dune.scm: New files. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document dune-build-system. * guix/build-system/ocaml.scm (lower, default-findlib, default-ocaml): Export them. (package-with-explicit-ocaml): Also transform packages built with dune-build-system.