| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
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* gnu/packages/cran.scm (r-biocmanager): New variable.
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* gnu/packages/cran.scm (r-ncdf4): New variable.
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* gnu/packages/cran.scm (r-rcppannoy): New variable.
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As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.
* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
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Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.
* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and
switch to git-fetch method.
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Add an auto-login option that behaves as the one of mingetty-service.
* gnu/services/base.scm (kmscon-configuration)[auto-login]: New field.
(kmscon-service-type): Pass it to kmscon command.
* doc/guix.texi (Base Services): Document it.
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* gnu/services/base.scm (kmscon-service-type): Add "--no-switchvt" to kmscon
command.
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* gnu/packages/guile.scm (guile-newt): New variable.
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This is a follow-up to 2c17bd7b2955beef4130d11b33e07e4fb3b234dc.
* gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
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* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
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* gnu/build/install.scm (%root-profile): New variable.
(install-database-and-gc-roots): New procedure.
(populate-single-profile-directory): Replace inline code with a call to
'install-database-and-gc-roots'.
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This is another way to address <https://bugs.gnu.org/32184>, which was
previously addressed in commit 19c924af4f3726688ca155a905ebf1cb9acdfca2.
* gnu/build/install.scm (register-closure): Move to...
* gnu/build/vm.scm (register-closure): ... here. New procedure.
* guix/scripts/pack.scm (self-contained-tarball)[build]: Remove
now unneeded 'with-extensions' form and custom (guix config) module.
* tests/guix-pack.sh: Revert the strategy from
commit 19c924af4f3726688ca155a905ebf1cb9acdfca2.
* tests/pack.scm ("self-contained-tarball"): Likewise.
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* guix/scripts/pack.scm (store-database): New procedure.
(self-contained-tarball): Use it when LOCALSTATEDIR? is true.
Remove 'schema' and add 'database'.
[build]: Pass DATABASE to 'populate-single-profile-directory'.
(squashfs-image): Remove #:deduplicate? parameter.
[build]: Remove (gnu build install) and (guix config) from the imported
modules. Remove 'with-extensions'.
* gnu/build/install.scm (populate-single-profile-directory): Remove
#:deduplicate?, #:register?, and #:schema; add #:database. Remove call
to 'register-closure' and simply copy DATABASE instead.
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This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845.
* gnu/packages/web.scm (nginx): Update to 1.14.1.
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* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52.
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* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/xorg.scm (xcb-util-errors): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update.
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* gnu/packages/cran.scm (r-weights): New variable.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
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* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03.
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* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0.
[native-inputs]: Remove them all.
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* gnu/packages/web.scm (jq)[source]: Code more hard.
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* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/video.scm (ffmpeg): Update to 4.1.
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c-ares has more than 3000 dependant packages.
This reverts commit b588adc96feec4498857ecb6d3537f746b0c0463.
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* gnu/packages/adns.scm (c-ares): Update to 1.15.0.
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* gnu/services/dns.scm (ddclient-activation): Fix procedure.
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0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c.
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
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* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
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* gnu/packages/ssh.scm (libssh): Update to 0.7.7.
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* gnu/packages/linux.scm (strace): Update to 4.25.
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* gnu/packages/libusb.scm (libmtp): Update to 1.1.16.
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* gnu/packages/version-control.scm (libgit2): Update to 0.26.8.
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* gnu/packages/wm.scm (i3-wm): Update to 4.16.
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* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20.
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