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* gnu: ruby: Replace with ruby-2.4.3 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | | * gnu/packages/ruby.scm (ruby-2.4.3): New variable. (ruby)[replacement]: New field.
* gnu: bedtools: Update to 2.27.1.Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (bedtools): Update to 2.27.1.
* gnu: ruby-2.2: Update to 2.2.9 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.9.
* gnu: ruby-2.3: Update to 2.3.6 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.6.
* gnu: yoshimi: Update to 1.5.5.Ricardo Wurmus2017-12-15
| | | | * gnu/packages/music.scm (yoshimi): Update to 1.5.5.
* gnu: s-shell: Update to commit da2e5c20c0c5f477ec3426dc2584889a789b1659.ng02017-12-14
| | | | | | | * gnu/packages/shells.scm (s-shell): Update to commit da2e5c20c0c5f477ec3426dc2584889a789b1659. [version]: Use 'git-version'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: xpra: Update to 2.2.Rutger Helling2017-12-14
| | | | | | | | * gnu/packages/xorg.scm (xpra): Update to 2.2. [inputs]: Add python2-netifaces and python2-pyopengl-accelerate. Fix position of commas. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python2-pyopengl-accelerate.Rutger Helling2017-12-14
| | | | | | * gnu/packages/python.scm (python2-pyopengl-accelerate): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-scikit-learn: Patch test non-determinism.Ben Woodcroft2017-12-14
| | | | | | | * gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: New file. * gnu/packages/machine-learning.scm (python-scikit-learn)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: diamond: Update to 0.9.14.Ben Woodcroft2017-12-14
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.14.
* gnu: gucharmap: Use glib-or-gtk-build-system.Andy Wingo2017-12-14
| | | | * gnu/packages/gnome.scm (gucharmap): Use glib-or-gtk-build-system.
* gnu: Erlang: Update to 20.1.7 [fixes CVE-2017-1000385].Leo Famulari2017-12-13
| | | | | * gnu/packages/erlang.scm (erlang): Update to 20.1.7 (native-inputs): Use version-major+minor in the URI of erlang-manpages.
* gnu: youtube-dl: Update to 2017.12.14.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.12.14.
* gnu: r-caret: Update to 6.0-78.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/statistics.scm (r-caret): Update to 6.0-78
* gnu: r-domc: Update to 1.3.5.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/statistics.scm (r-domc): Update to 1.3.5
* gnu: perl-text-bibtex: Update to 0.85.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/tex.scm (perl-text-bibtex): Update to 0.85
* gnu: perl-test-requires: Update to 0.10.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/perl-check.scm (perl-test-requires): Update to 0.10
* gnu: perl-test-pod: Update to 1.51.Tobias Geerinckx-Rice2017-12-14
| | | | | * gnu/packages/perl-check.scm (perl-test-pod): Update to 1.51 [source]: Update URI.
* gnu: perl-test-mocktime: Update to 0.15.Tobias Geerinckx-Rice2017-12-14
| | | | | * gnu/packages/perl-check.scm (perl-test-mocktime): Update to 0.15 [propagated-inputs]: Add perl-time-piece.
* gnu: Add perl-time-piece.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/perl.scm (perl-time-piece): New public variable.
* gnu: notmuch: Move elisp directory and generate autoloads.Arun Isaac2017-12-13
| | | | | | * gnu/packages/mail.scm (notmuch)[arguments]: Move elisp files to share/emacs/site-lisp/guix.d/notmuch-<version>. Add make-autoloads phase.
* gnu: polyml: Update to 5.7.1.Tobias Geerinckx-Rice2017-12-13
| | | | * gnu/packages/sml.scm (polyml): Update to 5.7.1.
* gnu: guile-gdbm-ffi: Install documentation.Tobias Geerinckx-Rice2017-12-13
| | | | | * gnu/packages/guile.scm (guile-gdbm-ffi)[arguments]: Install README.md and some examples. Tidy up MKDIR-P calls.
* gnu: gtksourceview: Update to 3.24.6.Tobias Geerinckx-Rice2017-12-13
| | | | * gnu/packages/gtk.scm (gtksourceview): Update to 3.24.6
* vm: Use qemu drive device parameter.Mathieu Othacehe2017-12-13
| | | | | * gnu/build/vm.scm (load-in-linux-vm): Use device parameter to define drive device.
* gnu: cgit: Patch absolute file names.Oleg Pykhalov2017-12-13
| | | | * gnu/packages/version-control.scm (cgit): Patch absolute file names.
* gnu: Add krita.Mark Meyer2017-12-12
| | | | | | * gnu/packages/kde.scm (krita): New variable. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
* gnu: xfig: Update to 3.2.6a.Tobias Geerinckx-Rice2017-12-12
| | | | | | | | * gnu/packages/xfig.scm (xfig): Update to 3.2.6a. [native-inputs]: Remove groff, imake, makedepend. Add desktop-file-utils. [inputs]: Remove libxmu and zlib. [arguments]: Remove custom phases. Add a ‘strip-bogus-exec-prefix’ phase. Run the rudimentary test suite.
* gnu: services: Add php-fpm.nee2017-12-12
| | | | | | | | | | | | | * gnu/services/web.scm (<php-fpm-configuration>, <php-fpm-process-manager-configuration>): New record types. (php-fpm-configuration?, php-fpm-process-manager-configuration?, php-fpm-service-type, nginx-php-location): New procedures. * doc/guix.texi (Web-Services): Document php-fpm service. * gnu/tests/web.scm: Add php-fpm system test. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: meson: Update to 0.44.0.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/build-tools.scm (meson): Update to 0.44.0
* gnu: miniupnpc: Update to 2.0.20171212.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171212.
* gnu: global: Update to 6.6.Efraim Flashner2017-12-12
| | | | * gnu/packages/code.scm (global): Update to 6.6.
* gnu: xfig, transfig: Update home pages.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Use SourceForge.net.
* gnu: Add uthash.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/datastructures.scm (uthash): New public variable.
* gnu: Add fbcat.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/linux.scm (fbcat): New public variable.
* gnu: Add snapscreenshot.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/linux.scm (snapscreenshot): New public variable.
* gnu: linux-libre: Update to 4.14.5.Mark H Weaver2017-12-11
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.5. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.68.Mark H Weaver2017-12-11
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.68.
* gnu: linux-libre@4.4: Update to 4.4.105.Mark H Weaver2017-12-11
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.105.
* gnu: whois: Update to 5.2.19.Marius Bakke2017-12-12
| | | | | | * gnu/packages/networking.scm (whois): Update to 5.2.19. [arguments]: Don't set HAVE_LIBIDN in 'setenv' phase; this is now autodetected. [native-inputs]: Add PKG-CONFIG.
* gnu: Remove ffmpeg@3.3.Marius Bakke2017-12-12
| | | | | | | | The reason this was required was because of a regression in ffmpeg 3.4; see <https://trac.ffmpeg.org/ticket/6775>. * gnu/packages/gstreamer.scm (gst-libav)[inputs]: Change FFMPEG-3.3 to FFMPEG. * gnu/packages/video.scm (ffmpeg-3.3): Remove variable.
* gnu: ffmpeg: Update to 3.4.1.Marius Bakke2017-12-12
| | | | * gnu/packages/video.scm (ffmpeg): Update to 3.4.1.
* gnu: Add cli-visualizer.Oleg Pykhalov2017-12-12
| | | | * gnu/packages/audio.scm (cli-visualizer): New variable.
* services: web: Switch nginx related functions to use match-record.Christopher Baines2017-12-11
| | | | | | | As this is less prone to mistakes than match. * gnu/services/web.scm (default-nginx-config, nginx-activation, nginx-shepherd-service): Switch from using match-lambda to match-record.
* services: web: Add support for configuring the nginx server names hash.Christopher Baines2017-12-11
| | | | | | | | | | | | | The nginx service can fail to start if the server names hash bucket size is too small, which can happen on some systems, and when using QEMU, depending on the CPU. * gnu/services/web.scm (<nginx-configuration>): Add server-names-hash-bucket-size and server-names-hash-bucket-max-size. (default-nginx-config): Add support for the new hash bucket size parameters. (nginx-service, nginx-activation): Pass the new hash bucket size parameters through to the default-nginx-config procedure. * doc/guix.texi (Web Services): Document the new hash bucket size parameters.
* services: web: Remove default certificate and key files for nginx.Christopher Baines2017-12-11
| | | | | | | | | | | | If nginx is configured with a ssl-certificate file, and ssl-certificate-key, it will fail to start unless these exist. To avoid this happening, change the default to #f. * gnu/services/web.scm (<nginx-server-configuration>) [ssl-certificate,ssl-certificate-key]: Set the defaults to #f. * gnu/tests/web.scm (%nginx-servers): Remove redundant nginx-server-configuration fields. * doc/guix.texi (Web Services): Update examples and documentation.
* web: Don't error about missing ssl related files.Christopher Baines2017-12-11
| | | | | | | | | | Erroring here prevents doing things like building a system using nginx on a different machine from where it's intended to be deployed, or creating containers and VMs that use the ssl-certificate parts of the nginx configuration, without also getting these files to exist. * gnu/services/web.scm (emit-nginx-server-config): Don't error on missing ssl related files.
* gnu: cargo: Add file-name field to input sources.Efraim Flashner2017-12-11
| | | | | * gnu/packages/rust.scm (cargo)[inputs]: Add 'file-name' field to all source inputs.
* gnu: rust: Add support for all platforms.Efraim Flashner2017-12-11
| | | | | | * gnu/packages/rust.scm (%rust-bootstrap-binaries): Add entries for all platforms supported by Guix. (rustc-bootstrap, cargo-bootstrap)[supported-systems]: Remove field.
* gnu: %rust-bootstrap-binaries: Add missing catch-all entry.Efraim Flashner2017-12-11
| | | | | * gnu/packages/rust.scm (%rust-bootstrap-binaries): Add missing catch-all entry to prevent various errors in Guix.
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