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* gnu: r-seurat: Update to 3.0.0.Ricardo Wurmus2019-04-19
| | | | | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0. [propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc, r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang, r-rsvd, r-scales, and r-sctransform.
* gnu: Add r-sctransform.Ricardo Wurmus2019-04-19
| | | | * gnu/packages/cran.scm (r-sctransform): New variable.
* gnu: r-urltools: Update to 1.7.3.Ricardo Wurmus2019-04-19
| | | | * gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
* gnu: r-rdpack: Update to 0.11-0.Ricardo Wurmus2019-04-19
| | | | * gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
* gnu: r-sdmtools: Update to 1.1-221.1.Ricardo Wurmus2019-04-19
| | | | * gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
* gnu: r-hardyweinberg: Update to 1.6.2.Ricardo Wurmus2019-04-19
| | | | * gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
* gnu: r-clipr: Update to 0.6.0.Ricardo Wurmus2019-04-19
| | | | * gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
* gnu: r-caret: Update to 6.0-83.Ricardo Wurmus2019-04-19
| | | | * gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
* gnu: klick: Fix build with latest scons.Ricardo Wurmus2019-04-19
| | | | | * gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make it compatible with the current version of scons.
* gnu: perl-datetime-timezone: Fix missing timezone data.Christopher Baines2019-04-19
| | | | | | | | | I noticed this when using Sqitch, on systems without /usr/share/zoneinfo, actions like deploy fail. * gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata phase to replace /usr/share/zoneinfo with a reference to the tzdata package. [inputs]: Add the tzdata package.
* gnu: python2-send2trash: Don't inherit properties from python-send2trash.Marius Bakke2019-04-19
| | | | | | | This is a follow-up to commit 20b3fde7763a14f605ac8a0aba1abfa73a6e7dda. Commits and beer do not mix well. * gnu/packages/python-xyz.scm (python2-send2trash): Inherit using STRIP-PYTHON2-VARIANT.
* gnu: python-send2trash: Really delay Python2 variant.Marius Bakke2019-04-19
| | | | | | | | This is a follow-up to commit 4782a06f45d515eebc4d1ee8e958def409a0ef9f, which somehow solved my problem, but did so incorrectly. * gnu/packages/python-xyz.scm (python-send2trash)[properties]: Refer to PYTHON2-SEND2TRASH.
* gnu: gpgme: Update to 1.13.0.Marius Bakke2019-04-19
| | | | | * gnu/packages/gnupg.scm (gpgme): Update to 1.13.0. [source](patches): Remove.
* gnu: python-send2trash: Properly delay python2 variant.Marius Bakke2019-04-19
| | | | | * gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ... (python-send2trash)[properties]: ... to here.
* gnu: python-service-identity: Update to 18.1.0.Marius Bakke2019-04-19
| | | | * gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
* gnu: python-jsonschema: Update to 3.0.1.Marius Bakke2019-04-19
| | | | | | | | | * gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1. [arguments]: Adjust check phase for Twisted instead of nosetests. [native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER. Add PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED. [propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX. (python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
* gnu: Add python-pyrsistent.Marius Bakke2019-04-19
| | | | | * gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New public variables.
* gnu: python-twisted: Update to 19.2.0.Marius Bakke2019-04-19
| | | | | * gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0. [propagated-inputs]: Add PYTHON-PYHAMCREST.
* gnu: python-automat: Update to 0.7.0.Marius Bakke2019-04-19
| | | | * gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
* gnu: python-m2r: Update to 0.2.1.Marius Bakke2019-04-19
| | | | * gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
* gnu: python-idna: Update to 2.8.Marius Bakke2019-04-19
| | | | * gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
* gnu: python-hyperlink: Update to 19.0.0.Marius Bakke2019-04-19
| | | | * gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
* gnu: python-zope-interface: Update to 4.6.0.Marius Bakke2019-04-19
| | | | * gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
* gnu: xmlsec: Update to 1.2.28.Marius Bakke2019-04-19
| | | | * gnu/packages/xml.scm (xmlsec): Update to 1.2.28.
* gnu: gnuastro: Update to 0.9.Efraim Flashner2019-04-18
| | | | | * gnu/packages/astronomy.scm (gnuastro): Update to 0.9. [native-inputs]: Add libtool.
* gnu: nano: Update to 4.1.Efraim Flashner2019-04-18
| | | | * gnu/packages/nano.scm (nano): Update to 4.1.
* gnu: xpra: Update to 2.5.1.Rutger Helling2019-04-18
| | | | * gnu/packages/xorg.scm (xpra): Update to 2.5.1.
* gnu: rclone: Update to 1.47.0.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/sync.scm (rclone): Update to 1.47.0.
* gnu: console-setup: Update to 1.191.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/xorg.scm (console-setup): Update to 1.191.
* installer: Sort keyboard layouts according to language and translations.Ludovic Courtès2019-04-17
| | | | | | | | | | | Previously, we would always (1) put English first, and (2) sort the other layouts based on their English description. This fixes both issues. * gnu/installer/newt/keymap.scm (sort-layouts)[layout<?]: New procedure. [preferred]: New variable. Partition according to both the 'name' and 'synopsis' fields. Sort both the main layouts and the other layouts according to 'layout<?'.
* installer: Parse the 'shortDescription' field from xkeyboard-config.Ludovic Courtès2019-04-17
| | | | | * gnu/installer/keymap.scm (<x11-keymap-layout>)[synopsis]: New field. (xkb-rules->models+layouts): Fill out the 'synopsis' field.
* installer: Translate keyboard layout names.Ludovic Courtès2019-04-17
| | | | | | | * gnu/installer.scm (installer-program)[installer-builder]: Call 'bindtextdomain' for "xkeyboard-config". * gnu/installer/newt/keymap.scm (run-keymap-page): Add calls to 'gettext'.
* installer: Sort items with 'string-locale<?'.Ludovic Courtès2019-04-17
| | | | | | | | That way "Österreich" comes before "Schweiz" in a German locale (or pretty much any sane locale.) * gnu/installer/newt/page.scm (run-listbox-selection-page)[sort-listbox-items]: Use 'string-locale<?' instead of 'string<=?'.
* installer: Look up timezone name translations in "iso_3166-1".Ludovic Courtès2019-04-17
| | | | | * gnu/installer/newt/timezone.scm (run-timezone-page): Add call to 'gettext' for timezone names.
* installer: Display language and territory names natively.Ludovic Courtès2019-04-17
| | | | | | * gnu/installer.scm (installer-program): Add calls to 'bindtextdomain'. * gnu/installer/newt/locale.scm (run-locale-page) <language, territory>: Add calls to 'gettext'.
* installer: Change language as soon as it has been chosen.Ludovic Courtès2019-04-17
| | | | | | | | Previously we'd call 'setlocale' only after the complete 'locale' step had finished. * gnu/installer/newt/locale.scm (run-language-page): Set the 'LANGUAGE' environment variable before returning.
* gnu: guix: Update to b8b1e4d.Ludovic Courtès2019-04-17
| | | | * gnu/packages/package-management.scm (guix): Update to b8b1e4d.
* installer: Desktop environment page now includes window managers.Ludovic Courtès2019-04-17
| | | | | | | | | | * gnu/installer/services.scm (<system-service>)[snippet]: Change to be a list of sexps and add default value. [packages]: New field. (%system-services): Adjust 'snippet' fields to be lists of sexps. Add Openbox, awesome, i3, and ratpoison. (system-services->configuration): Adjust 'snippet' handling. Honor 'packages' field.
* gnu: guix: Don't pass '--with-libgcrypt-prefix'.Ludovic Courtès2019-04-17
| | | | | * gnu/packages/package-management.scm (guix)[arguments]: Remove "--with-libgcrypt-prefix" from the configure flags.
* gnu: awesome: Update home page.Ludovic Courtès2019-04-17
| | | | * gnu/packages/wm.scm (awesome)[home-page]: Update.
* services: fprintd: Fix service.Danny Milosavljevic2019-04-17
| | | | | | | | * gnu/services/authentication.scm (<fprintd-configuration>)[ntp]: Rename to... [fprintd]: ...this. (fprintd-dbus-service): New procedure. (fprintd-service-type): Use it. [default-value]: Add value.
* gnu: gtkwave: Update to 3.3.100.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/fpga.scm (gtkwave): Update to 3.3.100.
* gnu: qsynth: Update to 0.5.6.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/audio.scm (qsynth): Update to 0.5.6.
* gnu: qjackctl: Update to 0.5.7.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/audio.scm (qjackctl): Update to 0.5.7.
* gnu: csound: Update to 6.12.2.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/audio.scm (csound): Update to 6.12.2.
* gnu: gtkwave: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/fpga.scm (gtkwave)[source]: Hard-code NAME.
* gnu: calf: Update to 0.90.2.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/audio.scm (calf): Update to 0.90.2.
* gnu: the-legend-of-edgar: Update to 1.31.Tobias Geerinckx-Rice2019-04-17
| | | | | | * gnu/packages/games.scm (the-legend-of-edgar): Update to 1.31. [inputs]: Use SDL 2 union. [arguments]: Adjust accordingly.
* gnu: dungeon-crawl-stone-soup: Update to 0.23.2.Tobias Geerinckx-Rice2019-04-17
| | | | * gnu/packages/games.scm (dungeon-crawl-stone-soup): Update to 0.23.2.
* gnu: minetest: Update to 5.0.1.Tobias Geerinckx-Rice2019-04-17
| | | | | | * gnu/packages/games.scm (minetest): Update to 5.0.1. games minetest
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