| Commit message (Collapse) | Author | Age |
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* gnu/machine/ssh.scm (machine-check-file-system-availability)
(machine-check-initrd-modules, check-deployment-sanity): New variable.
(deploy-managed-host): Perform safety checks before deploying.
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* gnu/machine.scm (machine-system): Delete variable.
(machine-operating-system): New variable.
All callers changed.
* doc/guix.texi (Invoking guix deploy): Use the
'machine-operating-system' accessor rather than 'machine-system'.
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Clone::Choose is required at runtime, so this input needs to be
propagated. This change fixes the sqitch package.
* gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to
propagated-inputs.
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* gnu/packages/video.scm (ffmpeg): Update to 4.2.
[inputs]: Add dav1d.
* gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.3.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.6.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.6.
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* gnu/packages/cran.scm (r-xgboost): Update to 0.90.0.2.
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* gnu/packages/cran.scm (r-citr): Update to 0.3.1.
[propagated-inputs]: Remove r-bibtex.
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* gnu/packages/cran.scm (r-enrichr): Update to 2.0.
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* gnu/packages/cran.scm (r-dalex): Update to 0.4.4.
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* gnu/packages/cran.scm (r-bookdown): Update to 0.12.
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* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-7.
[propagated-inputs]: Add r-rcpp.
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* gnu/packages/cran.scm (r-sf): Update to 0.7-7.
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* gnu/packages/cran.scm (r-deldir): Update to 0.1-23.
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* gnu/packages/cran.scm (r-classint): Update to 0.4-1.
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* gnu/packages/cran.scm (r-rematch2): Update to 2.1.0.
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* gnu/packages/cran.scm (r-irkernel): Update to 1.0.2.
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* gnu/packages/cran.scm (r-lavaan): Update to 0.6-4.
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* gnu/packages/cran.scm (r-bayesm): Update to 3.1-3.
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* gnu/packages/cran.scm (r-rsvd): Update to 1.0.2.
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* gnu/packages/cran.scm (r-future): Update to 1.14.0.
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* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-7.2.
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* gnu/packages/cran.scm (r-bigrquery): Update to 1.2.0.
[propagated-inputs]: Add r-gargle and r-rlang.
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* gnu/packages/cran.scm (r-gargle): New variable.
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* gnu/packages/cran.scm (r-shades): Update to 1.4.0.
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* gnu/packages/cran.scm (r-rnifti): Update to 0.11.1.
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* gnu/packages/cran.scm (r-flare): Update to 1.6.0.2.
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* gnu/packages/cran.scm (r-sparsesvd): Update to 0.2.
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* gnu/packages/cran.scm (r-tidytree): Update to 0.2.5.
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* gnu/packages/cran.scm (r-rgl): Update to 0.100.26.
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* gnu/packages/cran.scm (r-afex): Update to 0.24-1.
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* gnu/packages/cran.scm (r-usethis): Update to 1.5.1.
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* gnu/packages/cran.scm (r-sjplot): Update to 2.7.0.
[propagated-inputs]: Add r-ggrepel.
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* gnu/packages/cran.scm (r-ggeffects): Update to 0.11.0.
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* gnu/packages/cran.scm (r-performance): Update to 0.3.0.
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* gnu/packages/cran.scm (r-emmeans): Update to 1.4.
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* gnu/packages/cran.scm (r-magick): Update to 2.1.
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* gnu/packages/cran.scm (r-raster): Update to 2.9-23.
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* gnu/packages/cran.scm (r-proc): Update to 1.15.3.
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