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* gnu: Remove unreferenced patch.Efraim Flashner2022-06-01
| | | | | | | This is a follow-up to a08c21f206d34a42d311e46b495b422188be70eb. * gnu/packages/patches/libmicrohttpd-0.9.73-test-ssl3.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: LLVM, Clang, LLD: Update to 14.0.4.Marius Bakke2022-06-01
| | | | | | | | * gnu/packages/llvm.scm (%llvm-monorepo-hashes): Adjust for 14.0.4. (%llvm-patches): Likewise. (llvm-14, clang-14, lld-14): Update to 14.0.4. * gnu/packages/patches/clang-14.0-libc-search-path.patch: Adjust for upstream changes.
* gnu: libmicrohttpd: Update to 0.9.75.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.75.
* gnu: libmicrohttpd: Use G-expressions.Tobias Geerinckx-Rice2022-05-29
| | | | | * gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Rewrite as G-expressions.
* gnu: pgpdump: Update to 0.35.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/gnupg.scm (pgpdump): Update to 0.35.
* gnu: ocrfeeder: Update to 0.8.5.Tobias Geerinckx-Rice2022-05-29
| | | | | * gnu/packages/gnome.scm (ocrfeeder): Update to 0.8.5. [arguments]: Don't explicitly return #t from phases.
* gnu: icedove: Use updated clang and llvm.Jonathan Brielmaier2022-06-01
| | | | | * gnu/packages/gnuzilla.scm (icedove)[native-inputs]: Replace `clang-11` and `clang-11` with the default version, which is now 13.
* gnu: icedove: Update to 91.10.0 [fixes CVE-2022-1834].Jonathan Brielmaier2022-06-01
| | | | * gnu/packages/gnuzilla.scm (icedove): Update to 91.10.0.
* gnu: tractor: Update to 3.13.Danial Behzadi2022-05-29
| | | | | | * gnu/packages/tor.scm (tractor): Update to 3.13. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* gnu: fortune-mod: Fix fortune directory.Tobias Geerinckx-Rice2022-05-29
| | | | | | | | It now matches the one given in the fortune(6) man page. * gnu/packages/games.scm (fortune-mode)[arguments]: Install to /share rather than /local/share/games. Shorten the 'fix-install-directory phase.
* gnu: pigx-scrnaseq: Update to 1.1.9.Ricardo Wurmus2022-06-01
| | | | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.9. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove autoconf and automake.
* gnu: pigx-bsseq: Update to 0.1.7.Ricardo Wurmus2022-06-01
| | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.7. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove automake and autoconf. * gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu: pigx-chipseq: Update to 0.1.0.Ricardo Wurmus2022-06-01
| | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.1.0. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove autoconf and automake. * gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu: vim: Update to 8.2.5048.Efraim Flashner2022-06-01
| | | | | * gnu/packages/vim.scm (vim): Update to 8.2.5048. [arguments]: Patch another instance of '/bin/sh'.
* gnu: pigx-rnaseq: Update to 0.1.0.Ricardo Wurmus2022-06-01
| | | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.0. [arguments]: Remove phase 'patch-knitr.
* gnu: pigx-rnaseq: Update to 0.0.21.Ricardo Wurmus2022-06-01
| | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.21.
* gnu: pigx-rnaseq: Fix build.Ricardo Wurmus2022-06-01
| | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase 'patch-knitr.
* gnu: gnome-commander: Update to 1.14.2.base-for-series-12550base-for-series-12546base-for-series-12541base-for-series-12538Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/gnome.scm (gnome-commander): Update to 1.14.2.
* gnu: angband: Update to 4.2.4.Tobias Geerinckx-Rice2022-05-29
| | | | | * gnu/packages/games.scm (angband): Update to 4.2.4. [arguments]: Don't explicitly return #t from phases.
* gnu: freeipmi: Update to 1.6.9.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.9.
* gnu: corefreq: Update to 1.90.1.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/linux.scm (corefreq): Update to 1.90.1.
* gnu: services: Update setuid service description.Tobias Geerinckx-Rice2022-05-29
| | | | | * gnu/services.scm (setuid-program-service-type)[description]: Remove ‘root’, add ‘setgid’.
* gnu: libfprint: Update to 1.94.4.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/freedesktop.scm (libfprint): Update to 1.94.4.
* gnu: fprintd: Update to 1.94.2.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/freedesktop.scm (fprintd): Update to 1.94.2.
* gnu: fprintd: Remove input labels.Tobias Geerinckx-Rice2022-05-29
| | | | | * gnu/packages/freedesktop.scm (fprintd)[native-inputs]: Remove input labels.
* gnu: fprintd: Fix build.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/freedesktop.scm (fprintd)[native-inputs]: Add python.
* gnu: beancount: Update to 2.3.5.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/finance.scm (beancount): Update to 2.3.5.
* gnu: caf: Update to 0.18.6.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/cpp.scm (caf): Update to 0.18.6.
* gnu: quazip: Update to 1.3.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/compression.scm (quazip): Update to 1.3.
* gnu: foomatic-filters: Use project home page.Tobias Geerinckx-Rice2022-05-29
| | | | * gnu/packages/cups.scm (foomatic-filters)[home-page]: Point upstream.
* gnu: Add sylamer.Ricardo Wurmus2022-06-01
| | | | * gnu/packages/bioinformatics.scm (sylamer): New variable.
* gnu: linux-libre 5.10: Update to 5.10.119.Leo Famulari2022-05-31
| | | | | * gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.119. (linux-libre-5.10-pristine-source): Update hash.
* gnu: linux-libre 5.15: Update to 5.15.44.Leo Famulari2022-05-31
| | | | | * gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.44. (linux-libre-5.15-pristine-source): Update hash.
* gnu: linux-libre: Update to 5.17.12.Leo Famulari2022-05-31
| | | | | * gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.12. (linux-libre-5.17-pristine-source): Update hash.
* gnu: Add r-gsalib.Ricardo Wurmus2022-05-31
| | | | * gnu/packages/cran.scm (r-gsalib): New variable.
* gnu: Add glibc-locales-2.32.Ricardo Wurmus2022-05-31
| | | | * gnu/packages/base.scm (glibc-locales-2.32): New variable.
* gnu: Add glibc-locales-2.31.Ricardo Wurmus2022-05-31
| | | | * gnu/packages/base.scm (glibc-locales-2.31): New variable.
* gnu: Add glibc-locales-2.30.Ricardo Wurmus2022-05-31
| | | | * gnu/packages/base.scm (glibc-locales-2.30): New variable.
* gnu: Add glibc-2.32.Ricardo Wurmus2022-05-31
| | | | * gnu/packages/base.scm (glibc-2.32): New variable.
* gnu: Remove python2-biopython.Maxim Cournoyer2022-05-31
| | | | * gnu/packages/bioinformatics.scm (python2-biopython): Delete variable.
* gnu: Remove pplacer-scripts.Maxim Cournoyer2022-05-31
| | | | * gnu/packages/bioinformatics.scm (pplacer-scripts): Delete variable.
* gnu: Remove pplacer.Maxim Cournoyer2022-05-31
| | | | * gnu/packages/bioinformatics.scm (pplacer): Delete variable.
* gnu: Remove python2-pytest-cov.Maxim Cournoyer2022-05-31
| | | | * gnu/packages/check.scm (python2-pytest-cov): Delete variable.
* gnu: Remove python2-called-python.Maxim Cournoyer2022-05-31
| | | | * gnu/packages/python.scm (python2-called-python): Delete variable.
* gnu: Remove python-prompt-toolkit-2.Maxim Cournoyer2022-05-31
| | | | | | | * gnu/packages/python-xyz.scm (python-prompt-toolkit-2): Delete variable. (python-prompt-toolkit)[properties]: Delete field. (python-jupyter-console): Replace python-prompt-toolkit-2 with python-prompt-toolkit.
* gnu: Remove python2-setuptools.Maxim Cournoyer2022-05-31
| | | | | | | * gnu/packages/python-xyz.scm (python2-setuptools): Delete variable. (python-setuptools)[properties]: Delete field. * gnu/packages/syncthing.scm (syncthing-gtk): Delete commented native input. * guix/lint.scm (check-inputs-should-not-be-an-input-at-all): Remove obsolete entries.
* gnu: Remove python2-checkm-genome.Maxim Cournoyer2022-05-31
| | | | * gnu/packages/bioinformatics.scm (python2-checkm-genome): Delete variable.
* gnu: qtwebengine: Re-style inputs.Maxim Cournoyer2022-05-31
| | | | | | * gnu/packages/qt.scm (qtwebengine)[phases]: Delete trailing #t. {substitute-source}: Use search-input-file. [inputs, native-inputs]: Use new style.
* gnu: Remove python2-backports-csv.Maxim Cournoyer2022-05-31
| | | | * gnu/packages/python-xyz.scm (python2-backports-csv): Delete variable.
* gnu: python2-six: Disable tests.Maxim Cournoyer2022-05-31
| | | | | * gnu/packages/python-xyz.scm (python2-six)[native-inputs]: Clear. [phases]: Delete check phase.
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