| Commit message (Collapse) | Author | Age |
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* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.0.
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* gnu/packages/version-control.scm (git): Update to 2.8.3.
(git-manpages)[source]: Update hash.
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* gnu/packages/statistics.scm (r-zoo): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/backup.scm (borg): Update to 1.0.3.
[source]: Remove pypi-uri.
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* gnu/packages/pdf.scm (poppler-qt5): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/parallel.scm (slurm-drmaa): New variable.
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* gnu/packages/bioinformatics.scm (pardre): New variable.
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* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
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* gnu/packages/python.scm (python2-rope): New variable.
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* gnu/packages/gnome.scm (gnome-calendar): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/package/shellutils.scm: New file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/scheme.scm (sicp): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/gnome.scm (dia): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
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* gnu/packages/gcc.scm (gcc-objc++): New variable.
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* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
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* gnu/packages/gcc.scm (gcc-objc): New variable.
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* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
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* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
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* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
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* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
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* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
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* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
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* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
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* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
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* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
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* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
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* gnu/packages/statistics.scm (r-highr): Update to 0.6.
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* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
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* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
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* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
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* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
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* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3.
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* gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
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* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
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