| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
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* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
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* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
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* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
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* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
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* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
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* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
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* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
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* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
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* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
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* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
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* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
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* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
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* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
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* gnu/packages/cran.scm (r-aod): New variable.
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* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
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* gnu/packages/gps.scm (gama): Update to 2.18.
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* gnu/packages/patches/idris-test-ffi008.patch: New file.
* gnu/packages/idris.scm (source): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
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* gnu/packages/web.scm (nginx): Update to 1.21.6.
(nginx-documentation): Update to 1.21.6-2829-1ecf0e0526da.
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* gnu/packages/lisp-xyz.scm (cl-simple-routes, ecl-simple-routes,
sbcl-simple-routes): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Move all inputs
from here...
[inputs]: ...to here.
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This should be fine because all uses of yaml.load supply the now mandatory
loader argument.
* gnu/packages/python-web.scm (awscli)[arguments]: Add phase
'use-recent-pyyaml.
[propagated-inputs]: Replace python-pyyaml-for-awscli with python-pyyaml.
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* gnu/packages/webkit.scm (%webkit-version): New variable.
(wpewebkit): Update to 2.36.0, rewriting package to inherit from webkitgtk.
(webkitgtk)[source]: Use %webkit-version, and adjust definition to match that
of wpewebkit.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.0.
[source]: Remove the webkitgtk-bind-all-fonts.patch and
webkitgtk-canonicalize-paths.patch patches.
[arguments]: Use gexp.
[tests?]: Update comment.
[build-type]: Add explanatory comment.
[configure-flags]: Enable gamepad support, remove nonexistent
USE_SYSTEMD option and enable mini-browser.
[phases]{do-not-disable-new-dtags}: New phase.
{help-cmake-find-elogind}: Likewise.
{patch-gtk-doc-scan}: Simplify to avoid for-each. Locate docbookx.dtd via
search-input-file.
{embed-absolute-wpebackend-reference}: Use search-input-file.
[native-inputs]: Use new style.
[inputs]: Likewise. Add elogind and libmanette.
[description]: Adjust indentation.
(webkitgtk-with-libsoup2): Re-format comment, fixing spacing.
[configure-flags]: Use gexp.
[propagated-inputs]: Use modify-inputs to replace libsoup with
libsoup-minimal-2.
* gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Delete file.
* gnu/packages/patches/webkitgtk-canonicalize-paths.patch: Likewise.
* gnu/local.mk: De-register them.
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* gnu/packages/fontutils.scm (woff2)[phases]: Delete trailing #t.
[inputs]: Move brotli to ...
[propagated-inputs]: ... here.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.310.
(linux-libre-4.9-pristine-source): Update hash.
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* gnu/packages/mail.scm (smtpmail): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/engineering.scm (librseq): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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