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* gnu: Add r-transcriptr.Ricardo Wurmus2022-01-11
| | | | * gnu/packages/bioconductor.scm (r-transcriptr): New variable.
* gnu: josm: Update to 18360.Julien Lepiller2022-01-11
| | | | * gnu/packages/geo.scm (josm): Update to 18360.
* gnu: stringtie: Update to 2.2.0.Ricardo Wurmus2022-01-11
| | | | | | | | | * gnu/packages/bioinformatics.scm (stringtie): Update to 2.2.0. [source]: Simplify snippet. [arguments]: Add make-flags; update build phases. [inputs]: Remove samtools-0.1; add bzip2, htslib-for-stringtie, and libdeflate. [license]: Change to Expat license.
* gnu: Add htslib-for-stringtie.Ricardo Wurmus2022-01-11
| | | | | | * gnu/packages/bioinformatics.scm (htslib-for-stringtie): New variable. * gnu/packages/patches/htslib-for-stringtie.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: python-yubikey-manager: Update to 4.0.7.Ricardo Wurmus2022-01-11
| | | | | | * gnu/packages/security-token.scm (python-yubikey-manager): Update to 4.0.7. [arguments]: Remove build phase customization; disable tests. [inputs]: Remove yubikey-personalization and libusb.
* gnu: python-fido2: Update to 0.9.3.Ricardo Wurmus2022-01-11
| | | | | | * gnu/packages/security-token.scm (python-fido2): Update to 0.9.3. [source]: Do not use gexp for snippet. [arguments]: Disable tests; remove trailing #T from build phase.
* gnu: Add gpaste.Attila Lendvai2022-01-11
| | | | | | * gnu/packages/gnome-xyz.scm (gpaste): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add python-pystitcher.Greg Hogan2022-01-11
| | | | | | * gnu/packages/python-xyz.scm (python-pystitcher): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add python-pypdf3.Greg Hogan2022-01-11
| | | | | | * gnu/packages/python-xyz.scm (python-pypdf3): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: python-validators: Update to 0.18.2.Greg Hogan2022-01-11
| | | | | | * gnu/packages/python-xyz.scm (python-validators): Update to 0.18.2. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: dealii: Update to 9.3.2.Felix Gruber2022-01-11
| | | | | | | | | | | | | | * gnu/packages/maths.scm (dealii): Update to 9.3.2. [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and dealii-fix-sundials.patch. [inputs]: Use simplified format. [native-inputs]: Use simplified format. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: New file. * gnu/packages/patches/dealii-fix-sundials.patch: New file. * gnu/local.mk: Add new patch files. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: reuse: Update to 0.14.0.Felix Gruber2022-01-11
| | | | | | * gnu/packages/license.scm (reuse): Update to 0.14.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add emacs-org-transclusion.Vinicius Monego2022-01-11
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-org-transclusion): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: notmuch: Simplify inputs.Nicolas Goaziou2022-01-11
| | | | * gnu/packages/mail.scm (notmuch)[native-inputs]: Remove labels.
* gnu: notmuch: Update to 0.34.3.Nicolas Goaziou2022-01-11
| | | | * gnu/packages/mail.scm (notmuch): Update to 0.34.3.
* gnu: emacs-keycast: Update to 1.1.2.Nicolas Goaziou2022-01-11
| | | | * gnu/packages/emacs-xyz.scm (emacs-keycast): Update to 1.1.2.
* gnu: emacs-org-fragtog: Update to 0.4.1.Nicolas Goaziou2022-01-11
| | | | * gnu/packages/emacs-xyz.scm (emacs-org-fragtog): Update to 0.4.1.
* gnu: emacs-posframe: Update to 1.1.6.Nicolas Goaziou2022-01-11
| | | | * gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.1.6.
* gnu: guix-build-coordinator: Update to 0-47.048c609.Christopher Baines2022-01-11
| | | | | * gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-47.048c609.
* services: laminar: Set LAMINAR_BIND_RPC environment variable.Arun Isaac2022-01-11
| | | | | | | | Earlier, the bind-rpc field of <laminar-configuration> was not used at all. This was a bug. * gnu/services/ci.scm (laminar-shepherd-service): Use bind-rpc to set LAMINAR_BIND_RPC environment variable.
* gnu: handbrake: Update to 1.5.1.Vinicius Monego2022-01-11
| | | | | | * gnu/packages/video.scm (handbrake): Update to 1.5.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: hydrogen: Update to 1.1.1.Michael Rohleder2022-01-11
| | | | | | * gnu/packages/music.scm (hydrogen): Update to 1.1.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: strawberry: Update to 1.0.1.Michael Rohleder2022-01-11
| | | | | | * gnu/packages/music.scm (strawberry): Update to 1.0.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: kcov: Edit description.Tobias Geerinckx-Rice2022-01-09
| | | | | * gnu/packages/code.scm (kcov)[description]: Remove operating systems. Edit slightly.
* gnu: kcov: Update to 40.Tobias Geerinckx-Rice2022-01-09
| | | | * gnu/packages/code.scm (kcov): Update to 40.
* gnu: chez-scheme: Update to 9.5.6.Tobias Geerinckx-Rice2022-01-09
| | | | | | | | * gnu/packages/chez.scm (chez-scheme): Update to 9.5.6. [source]: Remove patch. [arguments]: Don't explicitly return #t from phases. * gnu/packages/patches/chez-scheme-build-util-paths-backport.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: astroid: Remove input labels.Tobias Geerinckx-Rice2022-01-09
| | | | | * gnu/packages/mail.scm (astroid)[inputs]: Remove input labels.
* gnu: astroid: Fix build.Tobias Geerinckx-Rice2022-01-09
| | | | | * gnu/packages/mail.scm (astroid)[inputs]: Substitute webkitgtk-with-libsoup2 for webkitgtk.
* gnu: libsoup-minimal: Update to 3.0.4.Tobias Geerinckx-Rice2022-01-09
| | | | * gnu/packages/gnome.scm (libsoup-minimal): Update to 3.0.4.
* gnu: ii: Update to 1.9.Tobias Geerinckx-Rice2022-01-09
| | | | * gnu/packages/irc.scm (ii): Update to 1.9.
* gnu: eg25-manager: Update to 0.4.2.Tobias Geerinckx-Rice2022-01-09
| | | | * gnu/packages/firmware.scm (eg25-manager): Update to 0.4.2.
* gnu: diffoscope: Update to 199.Tobias Geerinckx-Rice2022-01-09
| | | | * gnu/packages/diffoscope.scm (diffoscope): Update to 199.
* gnu: Go 1.17: Update to 1.17.6.Leo Famulari2022-01-10
| | | | * gnu/packages/golang.scm (go-1.17): Update to 1.17.6.
* gnu: Go 1.16: Update to 1.16.13.Leo Famulari2022-01-10
| | | | * gnu/packages/golang.scm (go-1.16): Update to 1.16.13.
* gnu: ungoogled-chromium: Convert arguments to G-expression.Marius Bakke2022-01-10
| | | | | | | * gnu/packages/chromium.scm (ungoogled-chromium)[native-inputs]: Remove the "master-preferences" gexp input. Remove all labels. [arguments]: Convert to gexp. Inline the above-mentioned gexp. Remove one usage of "gcc" label while at it.
* gnu: ungoogled-chromium: Remove obsolete compiler flags.Marius Bakke2022-01-10
| | | | | * gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Don't set CFLAGS and CXXFLAGS, as the build system already does the right thing.
* gnu: ungoogled-chromium: Remove obsolete substitution.Marius Bakke2022-01-10
| | | | * gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove substitution.
* gnu: ungoogled-chromium: Remove input labels.Marius Bakke2022-01-10
| | | | | * gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Remove labels. [arguments]: Use SEARCH-INPUT-FILE & co as appropriate.
* gnu: i2c-tools: Fix cross-compilation.Mathieu Othacehe2022-01-10
| | | | | * gnu/packages/linux.scm (i2c-tools)[arguments]: Use #$output to fix cross-compilation.
* gnu: Add xfel.Danny Milosavljevic2022-01-10
| | | | * gnu/packages/admin.scm (xfel): New variable.
* gnu: julia-simd: Update to 3.4.0.Efraim Flashner2022-01-10
| | | | * gnu/packages/julia-xyz.scm (julia-simd): Update to 3.4.0.
* gnu: Add julia-bioalignments.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-bioalignments): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-intervaltrees.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-intervaltrees): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-biosequences.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-biosequences): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-biosymbols.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-biosymbols): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-yaml.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-yaml): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-stringencodings.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-stringencodings): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-automa.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-automa): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-scanbyte.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-scanbyte): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add julia-simd.zimoun2022-01-10
| | | | | | * gnu/packages/julia-xyz.scm (julia-simd): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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