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* gnu: icecat: Update to 78.11.0-guix0-preview1 [fixes CVE-2021-29967].Mark H Weaver2021-06-02
| | | | | * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update upstream source hash.
* gnu: python-hg-evolve: Update to 10.3.1.Xinglu Chen2021-06-02
| | | | | | * gnu/packages/version-control.scm (python-hg-evolve): Update to 10.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: python-sphinx-gallery: Update to 0.9.0.Vinicius Monego2021-06-02
| | | | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinx-gallery): Update to 0.9.0. [source]: Build from PyPI. [arguments]: Enable tests. Add custom 'check phase and phase to make test files writable. [native-inputs]: Add python-joblib, python-matplotlib, python-numpy, python-pillow, python-pytest, python-pytest-cov, python-sphinx. Remove python-pytest-runner. [home-page]: Follow redirect. (python2-sphinx-gallery): Remove package. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: redis: Update to 6.2.4 [security fixes].Simon Streit2021-06-02
| | | | | | | | | Fixes CVE-2021-29477. * gnu/packages/databases.scm (redis): Update to 6.2.4. [arguments]: Disable the 'integration/failover' test. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add frama-c.Julien Lepiller2021-06-02
| | | | * gnu/packages/maths.scm (frama-c): New variable.
* gnu: Add why3.Julien Lepiller2021-06-02
| | | | * gnu/packages/maths.scm (why3): New variable.
* gnu: rtl8821ce-linux-module: Update to 0.0.0-3.897e7c4.Zhu Zihao2021-06-01
| | | | | | | | Fix the broken build with linux-libre 5.12. * gnu/packages/linux.scm (rtl8821ce-linux-module): Update to 0.0.0-3.897e7c4. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* machine: ssh: Gracefully handle failure of the effectful bits.Ludovic Courtès2021-06-01
| | | | | | | | | | Previously, '&inferior-exception' raised by 'upgrade-shepherd-services' and co. would go through as-is, leaving users with an ugly backtrace. * gnu/machine/ssh.scm (deploy-managed-host): Define 'eval/error-handling' and use it in lieu of EVAL as arguments to 'switch-to-system', 'upgrade-shepherd-services', and 'install-bootloader'.
* services: cuirass: Do not export record type descriptors.Ludovic Courtès2021-06-01
| | | | | | * gnu/services/cuirass.scm (<cuirass-remote-server-configuration>) (<cuirass-configuration>, <cuirass-remote-worker-configuration>): Do not export.
* services: cuirass: Create the profile and GC root directory.Ludovic Courtès2021-06-01
| | | | | * gnu/services/cuirass.scm (cuirass-activation): Create /var/guix/profiles/per-user/cuirass/cuirass or similar.
* maint: Require Guile 3.0.Ludovic Courtès2021-06-01
| | | | | | | | | | | | * configure.ac: Require Guile 3.0. * doc/guix.texi (Requirements): Adjust accordingly. * gnu/packages/package-management.scm (guile2.2-guix): Remove. * guix/lint.scm (exception-with-kind-and-args?): Remove 'cond-expand'. * guix/scripts/deploy.scm (deploy-machine*): Likewise. * guix/store.scm (call-with-store): Likewise. * guix/swh.scm (http-get*, http-post*): Likewise. * guix/ui.scm (without-compiler-optimizations, guard*) (call-with-error-handling): Likewise.
* gnu: llvm-7: Update to 7.1.0.Efraim Flashner2021-06-01
| | | | * gnu/packages/llvm.scm (llvm-7): Update to 7.1.0.
* gnu: unbound: Enable DoH support.Marius Bakke2021-06-01
| | | | | * gnu/packages/dns.scm (unbound)[inputs]: Add NGHTTP2:LIB. [arguments]: Add "--with-libnghttp2" to #:configure-flags.
* gnu: ungoogled-chromium: Update to 91.0.4472.77-0.6802c88.Marius Bakke2021-06-01
| | | | | | | | | | | | * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 91. (%chromium-version): Set to 91.0.4472.77. (%ungoogled-revision): Set to 91.0.4472.77-1-0-g6802c88. (%debian-patches): Remove obsolete patch. (%ungoogled-origin): Update hash. (ungoogled-chromium-snippet): Add substitution for an unbundling file. (ungoogled-chromium): Update hash. [arguments]: Add a substitution previously provided by a Debian patch. [inputs]: Change from ICU-68 to ICU-69.
* gnu: icu4c: Add 69.1.Marius Bakke2021-06-01
| | | | * gnu/packages/icu4c.scm (icu4c-69): New public variable.
* gnu: gcc-9: Update to 9.4.0.Efraim Flashner2021-06-01
| | | | * gnu/packages/gcc.scm (gcc-9): Update to 9.4.0.
* gnu: musescore: Add missing QML imports.Leo Prikler2021-06-01
| | | | | | | This fixes an issue wherein the palettes sidebar would turn up empty. * gnu/packages/music.scm (musescore)[build-system]: Use qt-build-systems. [inputs]: Add qtgraphicaleffects.
* gnu: rust-cbindgen@0.17: Update to 0.19.0.Jonathan Brielmaier2021-06-01
| | | | | * gnu/packages/rust-apps.scm (rust-cbindgen-0.17): Update to 0.19.0 and rename to rust-cbindgen-0.19.
* tests: hpcguix-web: Fix it.Mathieu Othacehe2021-06-01
| | | | | * gnu/tests/web.scm (run-hpcguix-web-server-test): Increase the VM memory size and add retries for the http-get test.
* gnu: Add bamutils.Roel Janssen2021-06-01
| | | | * gnu/packages/bioinformatics.scm (bamutils): New variable.
* gnu: sbcl: Update to 2.1.5.Pierre Neidhardt2021-06-01
| | | | * gnu/packages/lisp.scm (sbcl): Update to 2.1.5.
* gnu: Add python-vedo.Paul Garlick2021-06-01
| | | | * gnu/packages/python-science.scm (python-vedo): New variable.
* gnu: vtk: Wrap python modules.Paul Garlick2021-06-01
| | | | | * gnu/packages/image-processing.scm (vtk)[inputs]: Add python. [arguments]: Add VTK_WRAP_PYTHON and VTK_PYTHON_VERSION flags.
* gnu: guix: Update to 1.3.0-3.50dfbbf.Mathieu Othacehe2021-06-01
| | | | * gnu/packages/package-management.scm (guix): Update to 1.3.0-3.50dfbbf.
* gnu: Add python-sinfo.Roel Janssen2021-06-01
| | | | * gnu/packages/python-xyz.scm (python-sinfo): New variable.
* gnu: Add python-stdlib-list.Roel Janssen2021-06-01
| | | | * gnu/packages/python-xyz.scm (python-stdlib-list): New variable.
* gnu: guix-build-coordinator: Update to 0-30.f9af463.Christopher Baines2021-06-01
| | | | * gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-30.f9af463.
* services: dnsmasq: Extend 'activation-service'.Brice Waegeneire2021-05-31
| | | | | * gnu/services/dns.scm (dnsmasq-activation): New procedure … (dnsmasq-service-type): … use it.
* services: hostapd: Use package from configuration.Brice Waegeneire2021-05-31
| | | | | * gnu/services/networking.scm (hostapd-shepherd-services): Replace 'hostapd' by the package specified in the configuration.
* tests: Fix loadable-kernel-modules-service tests.Brice Waegeneire2021-05-31
| | | | | | | | | | * gnu/tests/linux-modules.scm (run-loadable-kernel-modules-service-test): Actually load the modules with kernel-module-loader-service-type. Use a singleton service instead of defining a custom one. * doc/guix.texi (Service Reference): To give an example of linux-loadable-module-service-type use a singleton instead of defining a new service.
* gnu: emacs-tramp: Update to 2.5.0.5.Nicolas Goaziou2021-05-31
| | | | * gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.0.5.
* gnu: emacs-solaire-mode: Update to 2.0.0.Nicolas Goaziou2021-05-31
| | | | * gnu/packages/emacs-xyz.scm (emacs-solaire-mode): Update to 2.0.0.
* gnu: texmacs: Update to 1.99.21.Nicolas Goaziou2021-05-31
| | | | * gnu/packages/text-editors.scm (texmacs): Update to 1.99.21.
* gnu: emacs-moody: Update to 0.5.5.Nicolas Goaziou2021-05-31
| | | | * gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.5.5.
* gnu: emacs-posframe: Update to 1.0.3.Nicolas Goaziou2021-05-31
| | | | * gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.3.
* gnu: lagrange: Update to 1.5.0.Solene Rapenne via Guix-patches via2021-05-31
| | | | | | * gnu/packages/web-browsers.scm (lagrange): Update to 1.5.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add emacs-eyebrowse.Stefan Reichör2021-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-eyebrowse): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add python-easy-ansi.Stefan Reichör2021-05-31
| | | | | | * gnu/packages/python-xyz.scm (python-easy-ansi): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add emacs-evil-paredit.Xinglu Chen2021-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-evil-paredit): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: tome4: Update to 1.7.3.Solene Rapenne via Guix-patches via2021-05-31
| | | | | | * gnu/packages/games.scm (tome4): Update to 1.7.3. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: bits: Use git-version and git-file-name.Ricardo Wurmus2021-05-31
| | | | | * gnu/packages/bioinformatics.scm (bits)[version]: Use git-version. [source]: Use git-file-name.
* gnu: piranha: Use git-version.Ricardo Wurmus2021-05-31
| | | | * gnu/packages/bioinformatics.scm (piranha)[version]: Use git-version.
* gnu: r-chipkernels: Use git-version and git-file-name.Ricardo Wurmus2021-05-31
| | | | | * gnu/packages/bioinformatics.scm (r-chipkernels)[version]: Use git-version. [source]: Use git-file-name.
* gnu: f-seq: Use git-version and git-file-name.Ricardo Wurmus2021-05-31
| | | | | * gnu/packages/bioinformatics.scm (f-seq)[version]: Use git-version. [source]: Use git-file-name.
* gnu: bismark: Use git-file-name.Ricardo Wurmus2021-05-31
| | | | * gnu/packages/bioinformatics.scm (bismark)[source]: Use git-file-name.
* gnu: filevercmp: Use git-version.Ricardo Wurmus2021-05-31
| | | | | * gnu/packages/bioinformatics.scm (filevercmp)[version]: Use git-version; bind "revision" in outer let.
* gnu: r-chipseeker: Move out of experiment section.Ricardo Wurmus2021-05-31
| | | | | * gnu/packages/bioconductor.scm (r-chipseeker): Move the package from the "experiment" section to the section for regular Bioconductor packages.
* gnu: r-spp: Move to (gnu packages bioconductor).Ricardo Wurmus2021-05-31
| | | | | * gnu/packages/bioinformatics.scm (r-spp): Move from here... * gnu/packages/bioconductor.scm (r-spp): ...to here.
* gnu: r-geneoverlap: Move out of experiment section.Ricardo Wurmus2021-05-31
| | | | | | * gnu/packages/bioconductor.scm (r-geneoverlap): Move the package definition out of the "experiment" section into the section for regular Bioconductor packages.
* gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1.Ricardo Wurmus2021-05-31
| | | | | | | * gnu/packages/bioinformatics.scm (r-phantompeakqualtools): Bind the commit outside of the package value. [version]: Use git-version. [source]: Use git-file-name.
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