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* gnu: Add cl-retrospectiff.Guillaume Le Vaillant2020-07-16
| | | | | * gnu/packages/lisp-xyz.scm (sbcl-retrospectiff, cl-retrospectiff, ecl-retrospectiff): New variables.
* gnu: Add cl-opticl-core.Guillaume Le Vaillant2020-07-16
| | | | | * gnu/packages/lisp-xyz.scm (sbcl-opticl-core, cl-opticl-core, ecl-opticl-core): New variables.
* gnu: Add cl-freetype2.Guillaume Le Vaillant2020-07-16
| | | | | * gnu/packages/lisp-xyz.scm (sbcl-freetype2, cl-freetype2, ecl-freetype2): New variables.
* gnu: Add cl-skippy.Guillaume Le Vaillant2020-07-16
| | | | | * gnu/packages/lisp-xyz.scm (sbcl-skippy, cl-skippy, ecl-skippy): New variables.
* gnu: Add cl-deflate.Guillaume Le Vaillant2020-07-16
| | | | | * gnu/packages/lisp-xyz.scm (sbcl-deflate, cl-deflate, ecl-deflate): New variables.
* gnu: Add cl-com.gigamonkeys.binary-data.Guillaume Le Vaillant2020-07-16
| | | | | | * gnu/packages/lisp-xyz.scm (sbcl-com.gigamonkeys.binary-data, cl-com.gigamonkeys.binary-data, ecl-com.gigamonkeys.binary-data): New variables.
* gnu: Add cl-tga.Guillaume Le Vaillant2020-07-16
| | | | * gnu/packages/lisp-xyz.scm (sbcl-tga, cl-tga, ecl-tga): New variables.
* gnu: r-quantreg: Update to 5.61.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/statistics.scm (r-quantreg): Update to 5.61. [propagated-inputs]: Add r-conquer.
* gnu: r-r-rsp: Update to 0.44.0.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/statistics.scm (r-r-rsp): Update to 0.44.0.
* gnu: r-tibble: Update to 3.0.3.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 3.0.3.
* gnu: r-rlang: Update to 0.4.7.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.4.7.
* gnu: r-brms: Update to 2.13.3.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-brms): Update to 2.13.3.
* gnu: r-gamlss: Update to 5.1-7.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-gamlss): Update to 5.1-7.
* gnu: r-gamlss-dist: Update to 5.1-7.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-7.
* gnu: r-pillar: Update to 1.4.6.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-pillar): Update to 1.4.6. [propagated-inputs]: Add r-ellipsis and r-lifecycle.
* gnu: r-mice: Update to 3.10.0.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-mice): Update to 3.10.0. [propagated-inputs]: Add r-generics.
* gnu: r-broom: Update to 0.7.0.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-broom): Update to 0.7.0. [propagated-inputs]: Remove r-nlme and r-reshape2; add r-ellipsis, r-glue, and r-rlang.
* gnu: r-rhdf5lib: Update to 1.10.1.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.1.
* gnu: r-qtl2: Update to 0.22-11.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-11.
* gnu: r-genomicfeatures: Update to 1.40.1.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.1.
* gnu: r-summarizedexperiment: Update to 1.18.2.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.2.
* gnu: r-activepathways: Update to 1.0.2.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2. [propagated-inputs]: Remove r-metap.
* gnu: r-rsubread: Update to 2.2.4.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
* gnu: Add r-conquer.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-conquer): New variable.
* gnu: r-cairo: Update to 1.5-12.2.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.2.
* gnu: r-gplots: Update to 3.0.4.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/statistics.scm (r-gplots): Update to 3.0.4. [native-inputs]: Add r-knitr.
* gnu: r-xml: Update to 3.99-0.4.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/statistics.scm (r-xml): Update to 3.99-0.4.
* gnu: r-tibble: Update to 3.0.2.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 3.0.2.
* gnu: r-svglite: Update to 1.2.3.2.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/statistics.scm (r-svglite): Update to 1.2.3.2. [native-inputs]: Add r-knitr.
* gnu: r-rstan: Update to 2.21.1.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-rstan): Update to 2.21.1. [propagated-inputs]: Add r-rcppparallel and r-v8. [native-inputs]: Add r-knitr.
* gnu: r-loo: Update to 2.3.0.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-loo): Update to 2.3.0. [native-inputs]: Add r-knitr.
* gnu: r-rstantools: Update to 2.1.1.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-rstantools): Update to 2.1.1. [propagated-inputs]: Add r-rcppparallel. [native-inputs]: Add r-knitr.
* gnu: r-iheatmapr: Update to 0.5.0.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-iheatmapr): Update to 0.5.0. [propagated-inputs]: Remove r-plyr and r-s4vectors. [native-inputs]: Add r-knitr.
* gnu: r-quanteda: Update to 2.1.0.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-quanteda): Update to 2.1.0. [propagated-inputs]: Add r-digest.
* gnu: r-nonnest2: Update to 0.5-5.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-nonnest2): Update to 0.5-5.
* gnu: r-future: Update to 1.18.0.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-future): Update to 1.18.0.
* gnu: r-doby: Update to 4.6.7.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-doby): Update to 4.6.7. [propagated-inputs]: Add r-dplyr and r-ggplot2.
* gnu: r-cubature: Update to 2.0.4.1.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-cubature): Update to 2.0.4.1. [native-inputs]: Add r-knitr.
* gnu: r-getoptlong: Update to 1.0.2.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-getoptlong): Update to 1.0.2.
* gnu: r-rcpp: Update to 1.0.5.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-rcpp): Update to 1.0.5.
* gnu: r-delayedmatrixstats: Update to 1.10.1.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.1.
* gnu: r-rhdf5: Update to 2.32.2.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.2.
* gnu: r-variancepartition: Update to 1.18.2.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
* gnu: Add tao.Ricardo Wurmus2020-07-16
| | | | | | | * gnu/packages/patches/tao-add-missing-headers.patch, gnu/packages/patches/tao-fix-parser-types.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/audio.scm (tao): New variable.
* Revert "gnu: rust: Add SSL native search paths."Tobias Geerinckx-Rice2020-07-15
| | | | This reverts commit ba1e4ce2560d51c8ba935e5b5667ba3a0133c694.
* gnu: Transmission: Update to 3.0.0.Leo Famulari2020-07-15
| | | | | | | * gnu/packages/bittorrent.scm (transmission): Update to 3.0.0. [source]: Remove obsolete patch. * gnu/packages/patches/transmission-CVE-2018-10756.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* tests: zabbix: Fix typo in comment.Oleg Pykhalov2020-07-15
| | | | | * gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Fix typo in comment.
* gnu: zabbix-agentd: Update to 5.0.1.Oleg Pykhalov2020-07-15
| | | | | * gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.0.1. (arguments)[#:phases]<install-front-end>: Update front-end path.
* gnu: bind: Update to 9.16.5.Tobias Geerinckx-Rice2020-07-15
| | | | * gnu/packages/dns.scm (isc-bind): Update to 9.16.5.
* gnu: python-tinycss2: Fix test failure.Marius Bakke2020-07-15
| | | | | | | | | Fixes <https://bugs.gnu.org/42372>. Reported by Michael Rohleder <mike@rohleder.de>. * gnu/packages/patches/python-tinycss2-flake8-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-tinycss2)[source](patches): New field.
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