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* gnu: Add eigensoft.Ricardo Wurmus2016-07-14
| | | | * gnu/packages/bioinformatics.scm (eigensoft): New variable.
* gnu: python-setuptools-scm: Update to 1.11.1.Efraim Flashner2016-07-14
| | | | * gnu/packages/python.scm (python-setuptools-scm): Update to 1.11.1.
* system: Change the shell of 'nobody' to 'nologin'.Ludovic Courtès2016-07-13
| | | | | | | | Fixes <http://bugs.gnu.org/23971>. Reported by Vincent Legoll <vincent.legoll@gmail.com>. * gnu/system/shadow.scm (%base-user-accounts): Add 'shell' field. Set 'home-directory' to "/nonexistent".
* gnu: grub: Update to 2.02~beta3.Jan Nieuwenhuizen2016-07-13
| | | | | | | * gnu/packages/grub.scm (grub): Update to 2.02~beta3. [arguments]: Modify tests/grub_func_test.in in 'patch-stuff' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: screen: Remove unneeded configure flags.Ludovic Courtès2016-07-13
| | | | | * gnu/packages/screen.scm (screen)[arguments]: Remove --infodir and --mandir, which are no longer needed.
* gnu: screen: Support 256 colors.George Clemmer2016-07-13
| | | | | | * gnu/packages/screen.scm (screen)[arguments]: Pass --enable-colors256. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: linux-libre: Update to 4.6.4.Mark H Weaver2016-07-12
| | | | * gnu/packages/linux.scm (linux-libre): Update to 4.6.4.
* gnu: linux-libre-4.4: Update to 4.4.15.Mark H Weaver2016-07-12
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.15.
* gnu: Add gptfdisk.Jan Nieuwenhuizen2016-07-13
| | | | | | * gnu/packages/disk.scm (gptfdisk): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-flycheck: Add missing dependency on emacs-seq.Ludovic Courtès2016-07-12
| | | | | | | Fixes a regression introduced in afb6fdaa5de2607261015372f31b1c19fd503a61. * gnu/packages/emacs.scm (flycheck)[propagated-inputs]: Add EMACS-SEQ.
* gnu: Remove unneeded 'imported-modules' fields for 'origin'.Ludovic Courtès2016-07-12
| | | | | | | | * gnu/packages/engineering.scm (fastcap)[source](modules, imported-modules): Remove. * gnu/packages/wm.scm (awesome)[source](imported-modules): Remove. * tests/packages.scm ("package-source-derivation, snippet"): Remove 'imported-modules' field.
* services: <shepherd-service> no longer has an 'imported-modules' field.Ludovic Courtès2016-07-12
| | | | | | | | | | | | | | | | | | * gnu/services/shepherd.scm (<shepherd-service>)[imported-modules]: Remove. (%default-imported-modules): Make private. (shepherd-service-file): Use 'with-imported-modules'. (shepherd-configuration-file): Remove 'modules' and the calls to 'imported-modules' and 'compiled-modules'. Use 'with-imported-modules' instead. * doc/guix.texi (Shepherd Services): Adjust accordingly. * gnu/services/base.scm (file-system-shepherd-service): Use 'with-imported-modules'. Remove 'imported-modules' field. * gnu/system/mapped-devices.scm (device-mapping-service-type): Remove 'imported-modules'. (open-luks-device): Use 'with-imported-modules'. * gnu/tests.scm (marionette-shepherd-service): Remove 'imported-modules' field and use 'with-imported-modules'.
* gnu: Use 'gexp->file' in conjunction with 'with-imported-modules'.Ludovic Courtès2016-07-12
| | | | | | | | | | | * gnu/services.scm (activation-script): Remove code to set '%load-path' and use 'with-imported-modules' instead. (cleanup-gexp): Likewise. * gnu/system/vm.scm (%vm-module-closure): New variable. (expression->derivation-in-linux-vm): Remove #:modules. [loader]: Remove code to set '%load-path'. [builder]: Use %VM-MODULE-CLOSURE. (qemu-image): Use 'with-imported-modules'.
* gexp: 'gexp->file' emits code to set '%load-path'.Ludovic Courtès2016-07-12
| | | | | | | * guix/gexp.scm (gexp->file): Add #:set-load-path? parameter and honor it. * gnu/system.scm (operating-system-parameters-file): Pass #:set-load-path? #f. * doc/guix.texi (G-Expressions): Adjust accordingly.
* linux-container: Fix list of imported modules.Ludovic Courtès2016-07-12
| | | | | | | | This fixes a regression introduced in 958dd3ce68733bcd5c1231424c7e4ad39e67594a. * gnu/system/linux-container.scm (container-script)[script]: Add (guix combinators) to the list of imported modules.
* gnu: Switch to 'with-imported-modules'.Ludovic Courtès2016-07-12
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/services.scm (directory-union): Use 'with-imported-modules' instead of the '#:modules' argument of 'computed-file'. * gnu/services/base.scm (udev-rules-union): Likewise. * gnu/services/dbus.scm (system-service-directory): Likewise. * gnu/services/desktop.scm (wrapped-dbus-service): (polkit-directory): Likewise. * gnu/services/networking.scm (tor-configuration->torrc): Likewise. * gnu/services/xorg.scm (xorg-configuration-directory): Likewise. * gnu/system/install.scm (self-contained-tarball): Likewise. * gnu/system/linux-container.scm (container-script): Likewise. * gnu/system/linux-initrd.scm (expression->initrd): Likewise, and remove #:modules parameter. (flat-linux-module-directory): Use 'with-imported-modules'. (base-initrd): Likewise. * gnu/system/locale.scm (locale-directory): Likewise. * gnu/system/shadow.scm (default-skeletons): Likewise. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise. * gnu/tests/base.scm (run-basic-test): Likewise. * gnu/tests/install.scm (run-install): Likewise. * doc/guix.texi (Initial RAM Disk): Update 'expression->initrd' documentation.
* gnu: obs: Remove compiler flags for non-Intel hardware.Efraim Flashner2016-07-12
| | | | | * gnu/packages/video.scm (obs)[arguments]: If compiling for arm or mips devices then don't add Intel specific compiler flags.
* gnu: Add Ribotaper.Ricardo Wurmus2016-07-12
| | | | * gnu/packages/bioinformatics.scm (ribotaper): New variable.
* gnu: Add bedtools-2.18.Ricardo Wurmus2016-07-12
| | | | * gnu/packages/bioinformatics.scm (bedtools-2.18): New variable.
* gnu: xscreensaver: Update to 5.35.Efraim Flashner2016-07-12
| | | | * gnu/packages/xdisorg.scm (xscreensaver): Update to 5.35.
* gnu: sxhkd: Update to 0.5.6.Efraim Flashner2016-07-12
| | | | * gnu/packages/xdisorg.scm (sxhkd): Update to 0.5.6.
* gnu: mtdev: Update to 1.1.5.Efraim Flashner2016-07-12
| | | | * gnu/packages/xdisorg.scm (mtdev): Update to 1.1.5.
* gnu: libxkbcommon: Update to 0.6.1.Efraim Flashner2016-07-12
| | | | * gnu/packages/xdisorg.scm (libxkbcommon): Update to 0.6.1.
* gnu: arandr: Update to 0.1.9.Efraim Flashner2016-07-12
| | | | * gnu/packages/xdisorg.scm (arandr): Update to 0.1.9.
* gnu: mpd: Update to 0.19.17.Leo Famulari2016-07-12
| | | | * gnu/packages/mpd.scm (mpd): Update to 0.19.17.
* gnu: parallel: Update to 20160622.Ben Woodcroft2016-07-12
| | | | * gnu/packages/parallel.scm (parallel): Update to 20160622.
* gnu: Add Tmux Themepack.Matthew Jordan2016-07-10
| | | | | | * gnu/packages/tmux.scm (tmux-themepack): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: help2man: Update to 1.47.4.Efraim Flashner2016-07-10
| | | | * gnu/packages/man.scm (help2man): Update to 1.47.4.
* gnu: man-pages: Update to 4.0.6.Efraim Flashner2016-07-10
| | | | * gnu/packages/man.scm (man-pages): Update to 4.0.6.
* gnu: man-db: Update to 2.7.5.Efraim Flashner2016-07-10
| | | | * gnu/packages/man.scm (man-db): Update to 2.7.5.
* gnu: obs: Update to 0.15.1.Efraim Flashner2016-07-10
| | | | * gnu/packages/video.scm (obs): Update to 0.15.1.
* gnu: libbluray: Update to 0.9.3.Efraim Flashner2016-07-10
| | | | * gnu/packages/video.scm (libbluray): Update to 0.9.3.
* gnu: libmtp: Update to 1.1.11.Ricardo Wurmus2016-07-10
| | | | | | * gnu/packages/patches/libmtp-devices.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/libusb.scm (libmtp): Update to 1.1.11.
* gnu: diamond: Update to 0.8.12.Ben Woodcroft2016-07-10
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.12.
* gnu: Add gnome-mpv.Alex Griffin2016-07-10
| | | | | | * gnu/packages/video.scm (gnome-mpv): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: mpv: Enable shared library support.Alex Griffin2016-07-10
| | | | | | * gnu/packages/video.scm (mpv): Enable shared library support. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: ccache: Update to 3.2.5.Efraim Flashner2016-07-10
| | | | | * gnu/packages/ccache.scm (ccache): Update to 3.2.5. [native-inputs]: Add which.
* gnu: ldb: Update to 1.1.26.Efraim Flashner2016-07-10
| | | | * gnu/packages/samba.scm (ldb): Update to 1.1.26.
* gnu: tevent: Update to 0.9.28.Efraim Flashner2016-07-10
| | | | * gnu/packages/samba.scm (tevent): Update to 0.9.28.
* gnu: talloc: Update to 2.1.7.Efraim Flashner2016-07-10
| | | | * gnu/packages/samba.scm (talloc): Update to 2.1.7.
* gnu: samba: Update to 4.3.11 [fixes CVE-2016-2119].Efraim Flashner2016-07-10
| | | | * gnu/packages/samba.scm (samba): Update to 4.3.11.
* gnu: dropbear: Update to 2016.73.Leo Famulari2016-07-09
| | | | * gnu/packages/ssh.scm (dropbear): Update to 2016.73.
* gnu: Add python-jedi.Danny Milosavljevic2016-07-09
| | | | | | * gnu/packages/python.scm (python-jedi, python2-jedi): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add python-dendropy.Ben Woodcroft2016-07-09
| | | | | | | | * gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New variables. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: star: Restrict supported systems to 64-bit systems.Ben Woodcroft2016-07-08
| | | | | * gnu/packages/bioinformatics.scm (star)[supported-systems]: Restrict to x86_64-linux and mips64el-linux.
* gnu: rxvt-unicode: Update to 9.22.Leo Famulari2016-07-07
| | | | * gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.22.
* services: nginx: Fix typo.ng02016-07-07
| | | | | | * gnu/services/web.scm (nginx-service): Fix typo. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add di.John J. Foerch2016-07-07
| | | | | | * gnu/packages/admin.scm (di): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: getmail: Update to 4.49.0.Efraim Flashner2016-07-07
| | | | * gnu/packages/mail.scm (getmail): Update to 4.49.0.
* gnu: python-pyusb: Update to 1.0.0.Efraim Flashner2016-07-07
| | | | * gnu/packages/libusb.scm (python-pyusb): Update to 1.0.0.
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