| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.22.0.
[propagated-inputs]: Add r-biocfilecache, r-readr, r-snpstats, and
r-variantannotation; remove r-biocgenerics, r-ggplot2, r-rsamtools, and
r-rtracklayer.
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* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-erma): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.38.0.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.38.0.
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* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.0.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.6.2;
[propagated-inputs]: Add r-cairo, r-digest, r-iranges, r-matrixstats, and
r-s4vectors.
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* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.26.0.
[propagated-inputs]: Add r-matrixgenerics.
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* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.0.
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* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.0.
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.24.0.
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.20.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.24.0.
[propagated-inputs]: Add r-annotationdbi, r-annotationhub, r-biocgenerics,
r-biocstyle, r-biostrings, r-ggplot2, r-msmstests, r-purrr, r-rlang, r-runit,
r-stringr, r-tibble, and r-xtable.
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* gnu/packages/bioconductor.scm (r-msmstests): New variable.
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* gnu/packages/bioconductor.scm (r-msmseq): New variable.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.82.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.28.0.
[propagated-inputs]: Remove r-rcpp.
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* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.58.0.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.68.0.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.60.0.
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* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.24.1.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.38.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.22.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.56.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.64.0.
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* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.58.0.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.
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