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* gnu: net-snmp: Mark package not affected by CVE-2015-8100.Efraim Flashner2019-07-10
| | | | * gnu/packages/networking.scm (net-snmp)[properties]: New field.
* gnu: testdisk: Download over HTTPS.Tobias Geerinckx-Rice2019-07-10
| | | | * gnu/packages/admin.scm (testdisk)[source]: Use HTTPS.
* gnu: testdisk: Update to 7.1.Tobias Geerinckx-Rice2019-07-10
| | | | * gnu/packages/admin.scm (testdisk): Update to 7.1.
* gnu: sedsed: Update to 1.1.Tobias Geerinckx-Rice2019-07-10
| | | | | * gnu/packages/admin.scm (sedsed): Update to 1.1. [arguments]: Use (default) Python (3).
* gnu: sedsed: Symlink after wrapping.Tobias Geerinckx-Rice2019-07-10
| | | | | | | | Drop unused .sedsed-real symlink and avoid sedsed → sedsed.py → .sedsed.py-real exec chain. * gnu/packages/admin.scm (sedsed)[arguments]: Move ‘symlink’ phase after ‘wrap’.
* gnu: mutter: Remove duplicate gtk+ input.Tobias Geerinckx-Rice2019-07-10
| | | | | * gnu/packages/gnome.scm (mutter)[arguments]: Remove duplicate gtk+ from propagated-inputs.
* gnu: a2ps: Fix CVE-2015-8107.Efraim Flashner2019-07-10
| | | | | | * gnu/packages/pretty-print.scm (a2ps)[source]: Add patch. * gnu/packages/patches/a2ps-CVE-2015-8107.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: mupdf: Update to 1.15.0 [fixes CVE-2018-18662, CVE-2018-19777,Efraim Flashner2019-07-10
| | | | | | | CVE-2018-1988{1,2}, CVE-2019-613{0,1}, CVE-2019-7321]. * gnu/packages/pdf.scm (mupdf): Update to 1.15.0. [source]: Update source snippet.
* gnu: mujs: Update to 1.0.6 [fixes CVE-2019-1141{1,2,3}, CVE-2019-12798].Efraim Flashner2019-07-10
| | | | | | | * gnu/packages/javascript.scm (mujs): Update to 1.0.6. [source]: Download using url-fetch. [arguments]: Update 'install-shared-library phase. [home-page]: Update to new home-page.
* gnu: plib: Fix CVE-2011-4620, CVE-2012-4552.Efraim Flashner2019-07-10
| | | | | | | * gnu/packages/game-development.scm (plib)[patches]: Add patches. * gnu/packages/patches/plib-CVE-2011-4620.patch, gnu/packages/patches/plib-CVE-2012-4552.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
* gnu: python-gnupg: Update to 0.4.4 [fixes CVE-2019-6690].Efraim Flashner2019-07-10
| | | | * gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.4.
* gnu: gpgme: Add updater properties.Efraim Flashner2019-07-10
| | | | | * gnu/packages/gnupg.scm (gpgme)[properties]: New field. Add ftp-server, ftp-directory.
* gnu: npth: Add updater properties.Efraim Flashner2019-07-10
| | | | | * gnu/packages/gnupg.scm (npth)[properties]: New field. Add ftp-server, ftp-directory.
* gnu: gpa: Update to 0.10.0.Efraim Flashner2019-07-10
| | | | * gnu/packages/gnupg.scm (gpa): Update to 0.10.0.
* gnu: gpa: Add updater properties.Efraim Flashner2019-07-10
| | | | | * gnu/packages/gnupg.scm (gpa)[properties]: New field, add ftp-server, ftp-directory.
* gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193]Efraim Flashner2019-07-10
| | | | * gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
* gnu: gnupg: Update to 2.2.17.Efraim Flashner2019-07-10
| | | | * gnu/packages/gnupg.scm (gnupg): Update to 2.2.17.
* gnu: icecat: Update to 60.8.0-guix1 [security fixes].Mark H Weaver2019-07-09
| | | | | | | | | | Includes fixes for CVE-2019-9811, CVE-2019-11709, CVE-2019-11711, CVE-2019-11712, CVE-2019-11713, CVE-2019-11715, CVE-2019-11717, CVE-2019-11719, CVE-2019-11729, and CVE-2019-11730. * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.8.0-guix1. (icecat-source)[upstream-firefox-source]: Update hash. (icecat): Refresh some stale comments.
* gnu: ungoogled-chromium: Increase build timeout.Marius Bakke2019-07-10
| | | | | * gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Set TIMEOUT to 40 hours.
* gnu: iproute2: Update to 5.2.0.Tobias Geerinckx-Rice2019-07-09
| | | | * gnu/packages/linux.scm (iproute): Update to 5.2.0.
* gnu: python-internetarchive: Update to 1.8.5.Oleg Pykhalov2019-07-09
| | | | | * gnu/packages/web.scm (python-internetarchive)[version]: Update to 1.8.5. [source](modules, snippet): New fields.
* gnu: wgetpaste: Update to 2.29.Efraim Flashner2019-07-09
| | | | | * gnu/packages/wget.scm (wgetpaste): Update to 2.29. [arguments]: Replace default paste service. Install license file.
* gnu: emacs-stumpwm-mode: Update to 0.0.1-1.8fbe071.Oleg Pykhalov2019-07-09
| | | | * gnu/packages/emacs-xyz.scm (emacs-stumpwm-mode): Update to 0.0.1-1.8fbe071.
* gnu: r-biocinstaller: Remove entirely.Tobias Geerinckx-Rice2019-07-09
| | | | | | | | This follows up on commit 0971f8bd884b6e92b77d9e12030cd58279699183, which led to ‘r-biocmanager: unbound variable’ errors. See <https://lists.gnu.org/archive/html/guix-devel/2019-07/msg00120.html>. * gnu/packages/bioinformatics.scm (r-biocinstaller): Remove variable.
* gnu: Add anonip.Hartmut Goebel2019-07-09
| | | | * gnu/packages/web.scm (anonip): New variable.
* gnu: snap: Update to 5.0.1.Nicolas Goaziou2019-07-09
| | | | * gnu/packages/education.scm (snap): Update to 5.0.1.
* gnu: musescore: Update to 3.2.3.Nicolas Goaziou2019-07-09
| | | | * gnu/packages/music.scm (musescore): Update to 3.2.3.
* gnu: libmicrohttpd: Update to 0.9.65.Tobias Geerinckx-Rice2019-07-09
| | | | * gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.65.
* gnu: grub: Build ‘grub-mount’.Tobias Geerinckx-Rice2019-07-09
| | | | | | This increases the closure size by a mere 1.8 MiB (0.8%). * gnu/packages/bootloaders.scm (grub)[inputs]: Add fuse.
* gnu: grub: Update to 2.04.Tobias Geerinckx-Rice2019-07-09
| | | | | | | | | | | * gnu/packages/bootloaders.scm (grub): Update to 2.04. [source]: Remove upstreamed patches. [arguments]: Don't require Python. Add a ‘disable-pixel-perfect-test’ phase to skip tests that fail with with our newer Unifont. * gnu/packages/patches/grub-efi-fat-serial-number.patch: Adjust context. * gnu/packages/patches/grub-binutils-compat.patch, gnu/packages/patches/grub-check-error-efibootmgr.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: Remove r-biocinstaller.Tobias Geerinckx-Rice2019-07-08
| | | | | | | It requires R < 3.6 and is no longer supported. * gnu/packages/bioinformatics.scm (r-biocinstaller): Define as deprecated in favour of r-biocmanager.
* gnu: r-xbioc: Update to 0.1.16-1.6ff0670.Tobias Geerinckx-Rice2019-07-08
| | | | | | | | | This is needed to deprecate r-biocinstaller, which is no longer distributed. * gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670. [propagated-inputs]: Replace deprecated r-biocinstaller with r-biocmanager.
* gnu: cmh: Fix build.Tobias Geerinckx-Rice2019-07-08
| | | | | | | This follows up on commit 1de48e8f8afec23847458c533d2fae0d69d8942a. * gnu/packages/algebra.scm (fplll-4-cmh): New variable. (cmh)[inputs]: Use it.
* gnu: libomp: Download over HTTPS.Tobias Geerinckx-Rice2019-07-08
| | | | * gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
* gnu: libomp: Fix source hash.Tobias Geerinckx-Rice2019-07-08
| | | | | | | This is a follow-up to commit c5296e205b65a9b53553cf45be2ab223d5e82df5, which updated llvm. * gnu/packages/llvm.scm (libomp)[source]: Fix hash.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7.Tobias Geerinckx-Rice2019-07-08
| | | | | * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.4.7.
* gnu: Add emacs-polymode-org.Joseph LaFreniere2019-07-08
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-polymode: Update to 0.2.Joseph LaFreniere2019-07-08
| | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2. [source]: Change URL of Git repository to Polymode GitHub project. [homepage]: Change URL to polymode GitHub project. [description]: Realign text. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: i3blocks: Update to ec050e7.ison2019-07-08
| | | | | | * gnu/packages/wm.scm (i3blocks): Update to ec050e7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dosfstools: Enable compat symlinks.Pierre Langlois2019-07-08
| | | | | | | | | Enable compatibility symlinks to provide commands such as `mkfs.vfat`. * gnu/packages/disk.scm (dosfstools)[arguments]: Pass "--enable-compat-symlinks" to configure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: wireservice: New wireservice-package macro.Pierre Langlois2019-07-08
| | | | | | | | | | | | Replace the parent 'base-package' variable with a 'wireservice-package' macro that includes all common package fields. * gnu/packages/wireservice.scm (base-package): Delete. (wireservice-package): New macro. (python-leather, python-agate, python-agate-sql, python-agate-dbf, python-agate-excel): Use wireservice-package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gama: Update to 2.06.Efraim Flashner2019-07-08
| | | | * gnu/packages/gps.scm (gama): Update to 2.06.
* gnu: diffoscope: Update to 116.Vagrant Cascadian2019-07-07
| | | | * gnu/packages/package-management (diffoscope): Update to 116.
* gnu: Add csvkit.Pierre Langlois2019-07-07
| | | | | | | | * gnu/packages/wireservice.scm (csvkit): New variable. * gnu/packages/patches/csvkit-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-excel.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-excel): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-dbf.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-dbf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-sql.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-sql): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-leather.Pierre Langlois2019-07-07
| | | | | | | * gnu/packages/wireservice.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-dbfread.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/python-xyz.scm (python-dbfread): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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