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* Do not record store file name in cpp.scm.Vagrant Cascadian2020-03-06
| | | | * gnu/packages/cpp.scm (abseil-cpp): Replace full store file name with '...'
* gnu: carla: Fix start-up.Tobias Geerinckx-Rice2020-03-06
| | | | | | | | This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942>, properly. * gnu/packages/audio.scm (carla)[arguments]: Add ‘wrap-executables’ phase. [inputs]: Add guile-2.2.
* gnu: fmt: Fix home page.Tobias Geerinckx-Rice2020-03-06
| | | | * gnu/packages/pretty-print.scm (fmt)[home-page]: Update.
* gnu: Order module imports in (gnu packages audio).Tobias Geerinckx-Rice2020-03-06
| | | | * gnu/packages/audio.scm: Order module imports alphabetically.
* gnu: carla: Partially fix start-up.Tobias Geerinckx-Rice2020-03-06
| | | | | | | | | This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942> but carla still fails to start. Reported by Nathan Dehnel <ncdehnel@gmail.com>. * gnu/packages/audio.scm (carla)[arguments]: Add ‘make-carla-executable’ phase.
* gnu: dovecot: Update to 2.3.10.Tobias Geerinckx-Rice2020-03-06
| | | | * gnu/packages/mail.scm (dovecot): Update to 2.3.10.
* gnu: Add gnome-boxes.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/gnome.scm (gnome-boxes): New variable.
* gnu: tracker-miners: Update to 2.3.2.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/gnome.scm (tracker-miners): Update to 2.3.2.
* gnu: tracker: Update to 2.3.2.Pierre Neidhardt2020-03-06
| | | | | | | | | * gnu/packages/gnome.scm (tracker): Update to 2.3.2. [arguments]: Fix tests properly. [native-inputs]: Remove unneeded native-inputs. [inputs]: Remove unneeded inputs. [description]: Replace unclear description with more down to earth use cases. [license]: Replace lgpl2.0+ with bsd-3 to reflect update.
* gnu: libvirt-glib: Update to 3.0.0.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/virtualization.scm (libvirt-glib): Update to 3.0.0.
* gnu: python-pygit2: Update to 1.1.0.Marius Bakke2020-03-06
| | | | | | * gnu/packages/python-xyz.scm (python-pygit2): Update to 1.1.0. [propagated-inputs]: Remove PYTHON-SIX and PYTHON-TOX. Add PYTHON-CACHED-PROPERTY. (python2-pygit2): Remove variable (Python 2 is no longer supported).
* gnu: gitg: Remove redundant input.Marius Bakke2020-03-06
| | | | * gnu/packages/gnome.scm (gitg)[inputs]: Remove LIBGIT2.
* gnu: libgit2-glib: Adjust inputs.Marius Bakke2020-03-06
| | | | | | * gnu/packages/gnome.scm (libgit2-glib)[native-inputs]: Move LIBSSH2 ... [inputs]: ... here. Move LIBGIT2 ... [propagated-inputs]: ... here. New field.
* gnu: libgit2-glib: Update to 0.99.0.1.Marius Bakke2020-03-06
| | | | | * gnu/packages/gnome.scm (libgit2-glib): Update to 0.99.0.1. [native-inputs]: Remove INTLTOOL.
* gnu: r-modeltools: Update to 0.2-23.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/statistics.scm (r-modeltools): Update to 0.2-23.
* gnu: r-ggplot2: Update to 3.3.0.Ricardo Wurmus2020-03-06
| | | | | | * gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.0. [propagated-inputs]: Remove r-lazyeval, r-reshape2, and r-viridislite; add r-glue and r-isoband.
* gnu: Add r-isoband.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-isoband): New variable.
* gnu: r-bookdown: Update to 0.18.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.18.
* gnu: r-fs: Update to 1.3.2.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-fs): Update to 1.3.2.
* gnu: r-flextable: Update to 0.5.9.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-flextable): Update to 0.5.9.
* gnu: r-lava: Update to 1.6.7.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-lava): Update to 1.6.7.
* gnu: Update python-scikit-learn to 0.22.1.Roel Janssen2020-03-06
| | | | | * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1; Add python-joblib to native-inputs to run the test suite.
* gnu: Add soci.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/databases.scm (soci): New variable.
* gnu: fmt: Update to 6.1.2.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/pretty-print.scm (fmt): Update to 6.1.2.
* gnu: fmt: Use HTTPS and git-fetch.Pierre Neidhardt2020-03-06
| | | | | * gnu/packages/pretty-print.scm (fmt)[source]: Use git-fetch. [home-page]: Use HTTPS.
* gnu: python-aiohttp: Update to 3.6.2.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-web.scm (python-aiohttp): Update to 3.6.2.
* gnu: python-scanpy: Update to 1.4.5.1.Ricardo Wurmus2020-03-06
| | | | | | | | * gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1. [source]: Fetch from pypi. [propagated-inputs]: Add python-legacy-api-wrap, python-packaging, python-patsy, and python-umap-learn. [native-inputs]: Add python-setuptools-scm.
* gnu: Add python-legacy-api-wrap.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-legacy-api-wrap): New variable.
* gnu: Add python-get-version.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-get-version): New variable.
* gnu: Add python-pytest-black.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-pytest-black): New variable.
* gnu: python-black: Update to 19.10b0.Ricardo Wurmus2020-03-06
| | | | | | | * gnu/packages/python-xyz.scm (python-black): Update to 19.10b0. [arguments]: Patch tests. [propagated-inputs]: Add python-pathspec, python-regex, and python-typed-ast. [native-inputs]: Add python-setuptools-scm.
* gnu: Add python-pathspec.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-pathspec): New variable.
* gnu: python-tables: Use later hdf5 version.Ricardo Wurmus2020-03-06
| | | | | * gnu/packages/python-xyz.scm (python-tables)[inputs]: Replace hdf5 with hdf5-1.10.
* gnu: python-tables: Do not detect CPU features.Ricardo Wurmus2020-03-06
| | | | | * gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase "disable-tuning".
* gnu: java-openjfx-build: Add snippet.Björn Höfling2020-03-05
| | | | | * gnu/packages/java.scm (java-openjfx-build)[source]: Add snippet to remove bundled gradle.
* gnu: python-anndata: Update to 0.7.1.Ricardo Wurmus2020-03-05
| | | | | | | | * gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1. [arguments]: Move check phase after install phase; delete one test. [propagated-inputs]: Add python-importlib-metadata, python-numcodecs, python-packaging, and python-zarr. [native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm.
* gnu: Add python-zarr.Ricardo Wurmus2020-03-05
| | | | * gnu/packages/python-xyz.scm (python-zarr): New variable.
* gnu: Add python-asciitree.Ricardo Wurmus2020-03-05
| | | | * gnu/packages/python-xyz.scm (python-asciitree): New variable.
* gnu: Add python-numcodecs.Ricardo Wurmus2020-03-05
| | | | * gnu/packages/python-xyz.scm (python-numcodecs): New variable.
* gnu: python-h5py: Update to 2.10.0.Ricardo Wurmus2020-03-05
| | | | | | * gnu/packages/python-xyz.scm (python-h5py): Update to 2.10.0. [inputs]: Use hdf5-1.10. [native-inputs]: Add pkg-config.
* gnu: Add emacs-ddskk.Masaya Tojo2020-03-05
| | | | * gnu/packages/emacs-xyz.scm (emacs-ddskk): New variable.
* gnu: libraqm: Parametrize version.Nicolas Goaziou2020-03-05
| | | | * gnu/packages/fontutils.scm (libraqm)[source]: Parametrize version.
* gnu: Add libraqm.Nicolas Goaziou2020-03-05
| | | | * gnu/packages/fontutils.scm (libraqm): New variable.
* gnu: sbcl-cl-webkit: Update to 20200227.Pierre Neidhardt2020-03-05
| | | | * gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200227.
* gnu: Add guile-xapian.Arun Isaac2020-03-05
| | | | * gnu/packages/guile-xyz.scm (guile-xapian, guile3.0-xapian): New variables.
* gnu: emacs-tldr: Update to 0-1.7203d1b.Arun Isaac2020-03-05
| | | | | * gnu/packages/emacs-xyz.scm (emacs-tldr): Update to 0-1.7203d1b. [propagated-inputs]: Add emacs-request.
* gnu: coq-mathcomp: Update home page URI.Björn Höfling2020-03-05
| | | | * gnu/packages/coq.scm (coq-mathcomp)[home-page]: Update URI.
* gnu: squashfs-tools: Update home page URI.Björn Höfling2020-03-05
| | | | * gnu/packages/compression.scm (squashfs-tools)[home-page]: Update URI.
* gnu: pbzip2: Use archived home-page.Björn Höfling2020-03-05
| | | | * gnu/packages/compression.scm (pbzip2)[home-page]: Load from archive.org
* gnu: domainfinder: Update home page URI.Björn Höfling2020-03-05
| | | | * gnu/packages/chemistry.scm (domainfinder)[home-page]: Update URI.
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