| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.2.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
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* gnu/packages/patches/tao-add-missing-headers.patch,
gnu/packages/patches/tao-fix-parser-types.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (tao): New variable.
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This reverts commit ba1e4ce2560d51c8ba935e5b5667ba3a0133c694.
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* gnu/packages/bittorrent.scm (transmission): Update to 3.0.0.
[source]: Remove obsolete patch.
* gnu/packages/patches/transmission-CVE-2018-10756.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.0.1.
(arguments)[#:phases]<install-front-end>: Update front-end path.
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* gnu/packages/dns.scm (isc-bind): Update to 9.16.5.
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Fixes <https://bugs.gnu.org/42372>.
Reported by Michael Rohleder <mike@rohleder.de>.
* gnu/packages/patches/python-tinycss2-flake8-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-web.scm (python-tinycss2)[source](patches): New field.
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* gnu/packages/patches/qtbase-absolute-runpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/qt.scm (qtbase/next): New variable.
* gnu/packages/qt.scm (python-shiboken-2): Update to 5.14.2.3.
[source](uri): Adjust for tarball rename.
[inputs]: Use the default CLANG-TOOLCHAIN.
(python-pyside-2)[inputs]: Likewise.
(python-pyside-2-tools)[inputs]: Change from QTBASE to QTBASE/NEXT.
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Fixes <https://issues.guix.gnu.org/38544>.
* gnu/packages/disk.scm (gparted)[build-system]: Use
glib-or-gtk-build-system.
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* gnu/packages/protobuf.scm (protobuf): Update to 3.12.3.
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* gnu/packages/rust.scm (rust-1.19)[native-search-paths]: Add entries
for SSL_CERT_DIR and SSL_CERT_FILE.
Reported by Kimapr[m] in #guix.
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* gnu/packages/mail.scm: Don't #:select arbitrary variables from
(guix licenses).
(anubis, mailutils, nullmailer, fetchmail, mutt, neomutt, gmime)
(bogofilter, offlineimap, emacs-mew, mu, alot, notifymuch, notmuch)
(python-notmuch, muchsync, getmail, libetpan, compface, claws-mail)
(msmtp, exim, dovecot, dovecot-trees, dovecot-libsodium-plugin, isync)
(perl-email-abstract, perl-email-address, perl-email-address-xs)
(perl-email-date-format, perl-email-messageid, perl-email-mime)
(perl-email-mime-contenttype, perl-email-mime-encodings)
(perl-email-sender, perl-email-simple, libesmtp, esmtp, fdm, procmail)
(khard, perl-mail-spf, perl-mail-authenticationresults, perl-mail-dkim)
(dkimproxy, mb2md, mpop, mhonarc, sendmail, opensmtpd, opensmtpd-extras)
(python-mailmanclient, python2-django-mailman3, postorius, swaks, alpine)
(balsa, afew, pan, urlscan, tnef, mumi, ytnef, public-inbox, sylpheed)
[licenses]: Use a license: prefix instead.
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* gnu/packages/mail.scm (opensmtpd-extras): Update to 6.7.1.
[native-inputs]: Remove bison, groff, automake, and autoconf.
[inputs]: Remove libasr, perl, lua, and linux-pam. Add mysql.
[arguments]: Remove obsolete or ineffective options.
[license]: Update.
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* gnu/packages/mail.scm (opensmtpd-extras)[source]: Hard-code NAME.
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This package no longer supports Python 2 since the update in
501d89d707a64335731f54e0e28dbf252b31afc7 and has no dependents.
* gnu/packages/python-xyz.scm (python2-pywavelets): Remove variable.
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* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.4.0.
[source](snippet): Adjust to fix spurious build requirement.
[arguments]: Add #:modules. Replace check phase with custom pytest invocation.
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* gnu/packages/python-xyz.scm (python-simplejson): Update to 3.17.0.
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* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.1.
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* gnu/packages/python-xyz.scm (python-bitarray): Update to 1.4.0.
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* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.5.
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* gnu/packages/python-web.scm (python-bottle): Update to 0.12.18.
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* gnu/packages/virtualization.scm (virt-manager)[inputs]: Remove PYTHON-IPADDRESS.
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* gnu/packages/python-crypto.scm (python-txtorcon)[propagated-inputs]: Remove
PYTHON-IPADDRESS.
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* gnu/packages/finance.scm (silkaj)[inputs]: Remove PYTHON-IPADDRESS.
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* gnu/packages/docker.scm (python-docker-py)[inputs]: Remove PYTHON-IPADDRESS.
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* gnu/packages/crates-io.scm (rust-xdg-2.2): Fix indentation.
[description]: Add missing final dot.
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* gnu/packages/games.scm (flightgear):
(simgear): Update to 2018.3.5.
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* gnu/packages/emulators.scm (ppsspp)[inputs]: Use GIT-FILE-NAME for
in-line git origins.
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* gnu/packages/emacs-xyz.scm (emacs-counsel-notmuch): New variable.
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* gnu/packages/emacs-xyz.scm (emacs-flycheck-ledger): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/emacs-xyz.scm (emacs-literate-calc-mode): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/emacs-xyz.scm (emacs-org-drill): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/emacs-xyz.scm (emacs-paren-face): Update to 1.0.6.
[synopsis, description]: Fix typo.
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* gnu/packages/fonts.scm (font-gnu-unifont): Update to 13.0.03.
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* gnu/packages/compression.scm (libzip): Update to 1.7.2.
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* gnu/packages/mail.scm (mutt): Update to 1.14.6.
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There's already a custom embedtls-apache variant for Hiawatha.
Fix it instead of enabling threading for embedtls-apache.
* gnu/packages/tls.scm (embedtls-for-hiawatha): Fix usage of
SUBSTITUTE-KEYWORD-ARGUMENTS. Disable -Wformat-signedness.
(embedtls-for-hiawatha): Remove ‘enable-features’ phase.
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* gnu/packages/usb-modeswitch.scm (usb-modeswitch)[arguments]: Use
CC-FOR-TARGET.
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* gnu/packages/usb-modeswitch.scm (usb-modeswitch): Update to 2.6.1.
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* gnu/packages/web.scm (hiawatha): Update to 10.11.
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* gnu/packages/tls.scm (mbedtls-apache): Update to 2.23.0.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Make source files writable. Enable threading.
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* gnu/packages/linux.scm (singularity)[arguments]: Rename
‘patch-reference-to-squashfs-tools’ to ‘patch-references’ and add egrep.
Reported by slimjim on #guix.
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* gnu/packages/mail.scm (urlscan)[description]: Replace inappropriate
@code{}.
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* gnu/packages/networking.scm (fping)[description]: Fix a typo & mark
it up.
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* gnu/packages/emacs-xyz.scm (emacs-delight): Update to 1.7.
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* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 7.1.2.
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* gnu/packages/bittorrent.scm (tremc): Update to 0.9.2.
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* gnu/packages/networking.scm (sslh): Update to 1.21.
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