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* gnu: Add python-pyfiglet.Edouard Klein2020-06-22
| | | | | | * gnu/packages/python-xyz.scm (python-pyfiglet): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
* gnu: Add python-flask-restx.Edouard Klein2020-06-22
| | | | | | * gnu/packages/python-web.scm (python-flask-restx): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
* gnu: Add python-pytest-flask.Edouard Klein2020-06-22
| | | | | | * gnu/packages/python-check.scm (python-pytest-flask): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
* gnu: Add python-pytest-benchmark.Edouard Klein2020-06-22
| | | | | | * gnu/packages/python-check.scm (python-pytest-benchmark): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
* gnu: Add python-py-cpuinfo.Edouard Klein2020-06-22
| | | | | | * gnu/packages/python-xyz.scm (python-py-cpuinfo): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
* gnu: Add abe.Nicolas Goaziou2020-06-22
| | | | * gnu/packages/games.scm (abe): New variable.
* gnu: mate: Don't propagate glib:bin.Jonathan Brielmaier2020-06-22
| | | | | | | * gnu/packages/mate.scm (mate)[propagated-inputs]: Remove as the proper fix arrived from core-updates. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: mate-common: Update to 1.24.1.Jonathan Brielmaier2020-06-22
| | | | | | * gnu/packages/mate.scm (mate-common): Update to 1.24.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add python-pytest-lazy-fixture.Vinicius Monego2020-06-22
| | | | | | * gnu/packages/check.scm (python-pytest-lazy-fixture): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: r-with-tests, r-minimal: Update to 4.0.2.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.2.
* gnu: gn: Update to 0.0-1794.eb997b5.Marius Bakke2020-06-22
| | | | * gnu/packages/build-tools.scm (gn): Update to 0.0-1794.eb997b5.
* gnu: ungoogled-chromium: Update to 83.0.4103.106-0.f08ce8b [security fixes].Marius Bakke2020-06-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This fixes CVE-2020-6465, CVE-2020-6466, CVE-2020-6467, CVE-2020-6468, CVE-2020-6469, CVE-2020-6470, CVE-2020-6471, CVE-2020-6472, CVE-2020-6473, CVE-2020-6474, CVE-2020-6475, CVE-2020-6476, CVE-2020-6477, CVE-2020-6478, CVE-2020-6479, CVE-2020-6480, CVE-2020-6481, CVE-2020-6482, CVE-2020-6483, CVE-2020-6484, CVE-2020-6485, CVE-2020-6486, CVE-2020-6487, CVE-2020-6488, CVE-2020-6489, CVE-2020-6490, CVE-2020-6491, CVE-2020-6493, CVE-2020-6494, CVE-2020-6495, CVE-2020-6496, CVE-2020-6497, and CVE-2020-6498. * gnu/packages/patches/ungoogled-chromium-system-jsoncpp.patch, gnu/packages/patches/ungoogled-chromium-system-zlib.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 83. (%chromium-version): Set to 83.0.4103.106. (%ungoogled-revision): Set to f08ce8b3f1300ef0750b5d6bf967b9cbbfd9a56d. (%gentoo-revision, %gentoo-patches, %debian-patches): New variables. (gentoo-patch, debian-patch): New procedures. (%chromium-origin, %ungoogled-origin): Update hashes. (ungoogled-chromium-source): Don't apply patches from %DEBIAN-ORIGIN, but take %GENTOO-PATCHES, %DEBIAN-PATCHES, and the local patch files. (ungoogled-chromium)[arguments]: Remove "enable_swiftshader=false" from #:configure-flags. Add "icu_use_data_file=false". Set CFLAGS in phase. Remove obsolete substitution. Adjust install phase to install .so files for ANGLE and Swiftshader. [native-inputs]: Change from CLANG-9 to CLANG-10. [inputs]: Replace ICU4C with ICU4C-67. (ungoogled-chromium/wayland): Remove obsolete substitution. Add "ozone_platform_x11=true" in #:configure-flags.
* gnu: icu4c: Add 67.1.Marius Bakke2020-06-22
| | | | * gnu/packages/icu4c.scm (icu4c-67): New public variable.
* gnu: ungoogled-chromium: Specify CPE name.Marius Bakke2020-06-22
| | | | * gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Add CPE-NAME.
* gnu: ungoogled-chromium: Remove non-free file.Marius Bakke2020-06-22
| | | | | * gnu/packages/chromium.scm (ungoogled-chromium-source): Remove (unused) SVG file that is licensed under a NoDerivatives license.
* gnu: ungoogled-chromium: Build with ffmpeg@4.2.Marius Bakke2020-06-22
| | | | | | | | | Fixes <https://bugs.gnu.org/41987>. Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>. * gnu/packages/video.scm (ffmpeg-4.2): New public variable. * gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change from FFMPEG to FFMPEG-4.2.
* gnu: ffmpeg: Enable rav1e on x86_64 only.Marius Bakke2020-06-22
| | | | | | | | Fixes <https://bugs.gnu.org/41993>. Reported by Kurt I <gitlabcanada@runbox.com>. * gnu/packages/video.scm (ffmpeg)[inputs]: Conditionally add RAV1E. [arguments]: Adjust #:configure-flags accordingly.
* gnu: xl2tpd: Fix build.Mathieu Othacehe2020-06-22
| | | | | * gnu/packages/vpn.scm (xl2tpd)[arguments]: Substitute hardcoded pppd path instead of trying to set CFLAGS variable.
* gnu: python-plotly: Update to 4.8.1.Pierre Langlois2020-06-22
| | | | | | | | | | | | | | | | But keep version 2.4.1 around for packages that still need it and for python2 support. * gnu/packages/graph.scm (python-plotly): Update to 4.8.1. [source]: Use git-fetch so that tests are also included. [arguments]: Enable tests. [home-page]: Follow redirect. (python-plotly-2.4.1): New variable. (python2-plotly): Inherit from python-plotly-2.4.1. * gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Depend on python-plotly-2.4.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-xarray.Pierre Langlois2020-06-22
| | | | | | | | | | | From 27ec21904f769c1e8114f767972d9037e1e9f68a Mon Sep 17 00:00:00 2001 From: Pierre Langlois <pierre.langlois@gmx.com> Date: Thu, 18 Jun 2020 00:58:02 +0200 Subject: [PATCH 4/5] gnu: Add python-xarray. * gnu/package/python-science.scm (python-xarray): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-retrying.Pierre Langlois2020-06-22
| | | | | | * gnu/packages/python-xyz.scm (python-retrying): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-pandas: Update to 1.0.5.Pierre Langlois2020-06-22
| | | | | | | | | | | | | | | | | | But also keep version 0.25.3 around for packages requiring an earlier versions, as well as version 0.24.2 for a version with python2. * gnu/packages/python-science.scm (python-pandas): Update to 1.0.5. [arguments]: Adapt 'patch-which phase. Add new 'prepare-x phase. Do not delete tests that depend on "moto", they are skipped automatically. [propagated-inputs]: Add python-jinja2. [inputs]: Add xsel and xclip. [native-inputs]: Add xorg-server-for-tests so we can test clipboard support. (python-pandas-0.24): New variable. (python2-pandas): Inherit from python-pandas-0.25. * gnu/packages/bioinformatics.scm (python-biom-format)[propagated-inputs]: Switch to python-pandas-0.25. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: deeptools: Deprecate in favor of python-deeptools.Pierre Langlois2020-06-22
| | | | | | | | | | And make sure python-deeptools's tests are running. * gnu/packages/bioinformatics.scm (python-deeptools): Fetch source using git. [native-inputs]: Add python-mock and python-nose. (deeptools): Mark as deprecated. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* self: Build with Guile 3.0.3.Ludovic Courtès2020-06-22
| | | | * gnu/packages/guile.scm (guile-3.0/libgc-7): Inherit from GUILE-3.0.3.
* gnu: emacs-helm: Update to 3.6.3.Pierre Neidhardt2020-06-22
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.6.3.
* gnu: emacs-helm-fish-completion: Update to 0.5.Pierre Neidhardt2020-06-22
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): Update to 0.5.
* gnu: js8call: Fix build.Guillaume Le Vaillant2020-06-22
| | | | * gnu/packages/radio.scm (js8call)[inputs]: Use regular hamlib.
* gnu: wsjtx: Update to 2.2.1.Guillaume Le Vaillant2020-06-22
| | | | | | * gnu/packages/radio.scm (wsjtx-hamlib): Update to 2.2.1. [arguments]: Add a 'fix-tests' phase. (wsjtx): Update to 2.2.1.
* gnu: qgis: Disable some failing tests.Guillaume Le Vaillant2020-06-22
| | | | * gnu/packages/geo.scm (qgis)[arguments]: Disable a few more failing tests.
* gnu: Add r-rgreat.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioconductor.scm (r-rgreat): New variable.
* gnu: rust-libc-0.2: Don't skip build.Efraim Flashner2020-06-22
| | | | | * gnu/packages/crates-io.scm (rust-libc-0.2)[arguments]: Don't skip build.
* gnu: rust-libc-0.2: Update to 0.2.71.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-libc-0.2): Update to 0.2.71.
* gnu: rust-rayon-1.3: Rename to rust-rayon-1.Efraim Flashner2020-06-22
| | | | | | | | | | | * gnu/packages/crates-io.scm (rust-rayon-1.3): Rename to rust-rayon-1. (rust-criterion-0.3, rust-criterion-0.2, rust-gimli-0.18, rust-hashbrown-0.5, rust-indexmap-1.3, rust-jpeg-decoder-0.1, rust-nasm-rs-0.1, rust-scroll-0.9, rust-syn-1.0, rust-syn-0.15) [arguments]: Adjust accordingly. * gnu/packages/gnome.scm (librsvg-next)[arguments]: Same. * gnu/packages/rust-apps.scm (tokei)[arguments]: Same. * gnu/packages/video.scm (rav1e)[arguments]: Same.
* gnu: Remove rust-rayon-1.1.Efraim Flashner2020-06-22
| | | | | | | * gnu/packages/crates-io.scm (rust-rayon-1.1): Remove variable. (rust-criterion-0.2, rust-gimli-0.18, rust-hashbrown-0.5, rust-jpeg-decoder-0.1, rust-scroll-0.9, rust-syn-0.15) [arguments]: Replace rust-rayon-1.1 with 1.3.
* gnu: rust-rayon-core-1.7: Rename to rust-rayon-core-1.Efraim Flashner2020-06-22
| | | | | | | * gnu/packages/crates-io.scm (rust-rayon-core-1.7): Rename to rust-rayon-core-1. (rust-criterion-0.2, rust-rayon-1.3, rust-rayon-1.1, rust-rayon-0.8) [arguments]: Adjust accordingly.
* gnu: Remove rust-rayon-core-1.5.Efraim Flashner2020-06-22
| | | | | | * gnu/packages/crates-io.scm (rust-rayon-core-1.5): Remove variable. (rust-criterion-0.2, rust-rayon-1.1) [arguments]: Replace rust-rayon-core-1.5 with 1.7.
* gnu: sequoia: Fix typos.Efraim Flashner2020-06-22
| | | | | * gnu/packages/sequoia.scm (sequoia)[arguments]: Move unquote next to the expression it applies to.
* gnu: rust-regex-1.3: Rename to rust-regex-1.Efraim Flashner2020-06-22
| | | | | | | | | | | | | | | | | | | | * gnu/packages/crates-io.scm (rust-regex-1.3): Rename to rust-regex-1. (rust-ansi-term-0.12, rust-bindgen-0.52, rust-bindgen-0.51, rust-bindgen-0.50, rust-bindgen-0.37, rust-bindgen-0.49, rust-clap-2, rust-compiletest-rs-0.3, rust-console-0.9, rust-console-0.7, rust-docopt-1.1, rust-env-logger-0.7, rust-env-logger-0.6, rust-env-logger-0.5, rust-gimli-0.18, rust-globset-0.4, rust-grep-cli-0.1, rust-grep-matcher-0.1, rust-grep-regex-0.1, rust-grep-searcher-0.1, rust-ignore-0.4, rust-lalrpop-0.17, rust-lalrpop-util-0.17, rust-locale-config-0.3, rust-localeconfig-0.2, rust-nom-5, rust-nom-4.2, rust-once-cell-1.2, rust-proptest-0.9, rust-proptest-0.8, rust-pulldown-cmark-0.4, rust-regex-automata-0.1, rust-rusqlite-0.19, rust-scan-fmt-0.2, rust-syn-1.0, rust-syn-0.15, rust-ucd-parse-0.1, rust-version-sync-0.8) [arguments]: Adjust accordingly. * gnu/packages/gnome.scm (librsvg-next)[arguments]: Same. * gnu/packages/rust-apps.scm (fd, ripgrep, tokei, rust-cargo-c) [arguments]: Same. * gnu/packages/sequoia.scm (sequoia)[arguments]: Same.
* gnu: Remove rust-regex-1.1.Efraim Flashner2020-06-22
| | | | | | | | | | | | | | | * gnu/packages/crates-io.scm (rust-regex-1.1): Remove variable. (rust-bindgen-0.50, rust-bindgen-0.49, rust-clap-2, rust-compiletest-rs-0.2, rust-console-0.7, rust-docopt-1.1, rust-env-logger-0.7, rust-env-logger-0.6, rust-env-logger-0.5, rust-gimli-0.18, rust-globset-0.4, rust-grep-cli-0.1, rust-grep-matcher-0.1, rust-grep-regex-0.1, rust-grep-searcher-0.1, rust-ignore-0.4, rust-nom-5, rust-nom-4.2, rust-once-cell-1.2, rust-proptest-0.9, rust-proptest-0.8, rust-pulldown-cmark-0.4, rust-regex-automata-0.1, rust-rusqlite-0.19, rust-syn-0.15, rust-ucd-parse-0.1, rust-version-sync-0.8) [arguments]: Replace rust-regex-1.1 with 1.3. * gnu/packages/rust-apps.scm (ripgrep)[arguments]: Same.
* gnu: Add rust-once-cell-0.1.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-once-cell-0.1): New variable.
* gnu: Add rust-gettext-rs-0.4.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-gettext-rs-0.4): New variable.
* gnu: Add rust-gettext-sys-0.19.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-gettext-sys-0.19): New variable.
* gnu: Add rust-locale-config-0.2.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-locale-config-0.2): New variable.
* gnu: Add rust-proptest-0.7.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-proptest-0.7): New variable.
* gnu: Add rust-regex-syntax-0.4.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-regex-syntax-0.4): New variable.
* gnu: Add rust-section-testing-0.0.Efraim Flashner2020-06-22
| | | | * gnu/packages/crates-io.scm (rust-section-testing-0.0): New variable.
* gnu: rust-tempfile-3.1: Rename to rust-tempfile-3.Efraim Flashner2020-06-22
| | | | | | | | | | | | | | | | | | | * gnu/packages/crates-io.scm (rust-tempfile-3.1): Rename to ... (rust-tempfile-3): .. this. (rust-cairo-rs-0.8, rust-cairo-rs-0.7, rust-cc-1.0, rust-compiletest-rs-0.3, rust-filetime-0.2, rust-gdk-pixbuf-sys-0.9, rust-gio-sys-0.9, rust-git2-0.11, rust-glib-0.9, rust-glib-0.8, rust-glib-sys-0.9, rust-gobject-sys-0.9, rust-handlebars-2.0, rust-lscolors-0.6, rust-native-tls-0.2, rust-nix-0.15, rust-nix-0.14, rust-no-panic-0.1, rust-pango-sys-0.9, rust-pangocairo-0.10, rust-proptest-0.9, rust-proptest-0.8, rust-rustdoc-stripper-0.1, rust-rustls-0.16, rust-rusty-fork-0.2, rust-sourcefile-0.1, rust-tiff-0.2, rust-tokio-0.2, rust-tokio-fs-0.1, rust-tokio-uds-0.2, rust-wayland-client-0.23, rust-wayland-client-0.21, rust-xattr-0.2) [arguments]: Adjust accordingly. * gnu/packages/rust-apps.scm (rust-cbindgen, tokei)[arguments]: Same. * gnu/packages/sequoia.scm (sequoia)[arguments]: Same. * gnu/packages/terminals.scm (alacritty)[arguments]: Same.
* gnu: Remove rust-tempfile-3.0.Efraim Flashner2020-06-22
| | | | | | | | | | * gnu/packages/crates-io.scm (rust-tempfile-3.0): Remove variable. (rust-compiletest-rs-0.3, rust-filetime-0.2, rust-handlebars-2.0, rust-nix-0.15, rust-nix-0.14, rust-proptest-0.9, rust-proptest-0.8, rust-rustls-0.16, rust-rusty-fork-0.2, rust-tiff-0.2, rust-tokei-fs-0.1, rust-tokio-uds-0.2, rust-xattr-0.2) [arguments]: Replace rust-tempfile-3.0 with 3.1. * gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
* gnu: rust-proptest-0.9: Update to 0.9.6.Efraim Flashner2020-06-22
| | | | | | * gnu/packages/crates-io.scm (rust-proptest-0.9): Update to 0.9. [arguments]: Don't skip build. In cargo-inputs replace rust-rand-0.4 with 0.6, rust-rand-chacha-0.2 with 0.1, rust-rand-xorshift-0.2 with 0.1.
* gnu: r-zoo: Move to (gnu packages cran).Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/statistics.scm (r-zoo): Move this variable from here... * gnu/packages/cran.scm (r-zoo): ...to here.
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