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* gnu: r-seurat: Update to 2.1.0.Ricardo Wurmus2017-12-18
| | | | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0. [propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica, r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr, r-rcppeigen, r-fastica.
* gnu: Add r-diffusionmap.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/graph.scm (r-diffusionmap): New variable.
* gnu: Add r-ggjoy.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/cran.scm (r-ggjoy): New variable.
* gnu: Add r-ggridges.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/cran.scm (r-ggridges): New variable.
* gnu: Add r-scatterplot3d.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/cran.scm (r-scatterplot3d): New variable.
* gnu: Add r-sdmtools.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/cran.scm (r-sdmtools): New variable.
* gnu: Add r-dtw.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/cran.scm (r-dtw): New variable.
* gnu: Add r-ica.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/cran.scm (r-ica): New variable.
* gnu: r-seurat: Fix ModularityOptimizer.jar.Ricardo Wurmus2017-12-18
| | | | | * gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class attribute in manifest.
* gnu: qmidiarp: Update to 0.6.5.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
* gnu: Add noise-repellent.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/audio.scm (noise-repellent): New variable.
* gnu: Add aj-snapshot.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/music.scm (aj-snapshot): New variable.
* gnu: Add jack-capture.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/music.scm (jack-capture): New variable.
* gnu: Add qjackrcd.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/audio.scm (qjackrcd): New variable.
* gnu: Add whysynth.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/music.scm (whysynth): New variable.
* gnu: Add sonivox-eas.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/music.scm (sonivox-eas): New variable.
* gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].Mark H Weaver2017-12-17
| | | | | | * gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n. (openssl-1.0.2m): Replace with ... (openssl-1.0.2n): ... this updated version. Update comment.
* gnu: Add mod-wsgi.Christopher Baines2017-12-17
| | | | * gnu/packages/web.scm (mod-wsgi): New variable.
* gnu: grammalecte: Fix 'license' field.Ludovic Courtès2017-12-17
| | | | | * gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to 'gpl3+'.
* gnu: Add grammalecte.Nicolas Goaziou2017-12-17
| | | | * gnu/packages/dictionaries.scm (grammalecte): New variable.
* gnu: gourmet: Fix runtime failure and enhance plugin.Mark Meyer2017-12-17
| | | | | | | | | | Fixes <https://bugs.gnu.org/29227>. Reported by Caleb Herbert <csh@bluehome.net>. * gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml. [arguments]: Custom install phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: pinentry-tty: Add meta-data for 'guix refresh'.Ludovic Courtès2017-12-17
| | | | * gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field.
* gnu: global: Update to 6.6.1 [fixes CVE-2017-17531].Efraim Flashner2017-12-17
| | | | * gnu/packages/code.scm (global): Update to 6.6.1.
* gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228].Leo Famulari2017-12-16
| | | | * gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6.
* gnu: krita: Enhance krita.Mark Meyer2017-12-16
| | | | | | | | * gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr. [native-inputs]: Add vc. [arguments]: Set path to headers for ilmbase. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
* gnu: borg: Fix a data loss bug.Leo Famulari2017-12-16
| | | | | | | | See <https://github.com/borgbackup/borg/issues/3444> for more information. * gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/backup.scm (borg)[source]: Use it.
* gnu: guix: Update snapshot to 02345c.Mathieu Othacehe2017-12-16
| | | | * gnu/packages/package-management.scm (guix): Update to 02345c.
* gnu: lookingglass: Limit to Intel compatable systems.Efraim Flashner2017-12-16
| | | | | * gnu/packages/virtualization.scm (lookingglass)[supported-systems]: New field.
* gnu: gx-saturator-lv2: Update to 0-3.605330f43.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-saturator-lv2): Update to 0-3.605330f43.
* gnu: gx-slow-gear-lv2: Update to 0-3.5d37e775b.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-3.5d37e775b.
* gnu: gx-vbass-preamp-lv2: Update to 0-2.eb999b0ca.Ricardo Wurmus2017-12-16
| | | | | | | | * gnu/packages/music.scm (gx-vbass-preamp-lv2): Update to 0-2.eb999b0ca. [inputs]: Add gtk+-2. [native-inputs]: Add pkg-config. (gx-overdriver-lv2, gx-tone-mender-lv2, gx-push-pull-lv2, gx-switchless-wah-lv2): Inherit from gx-guvnor-lv2.
* gnu: Add libvdpau-va-gl.Efraim Flashner2017-12-16
| | | | | | * gnu/packages/video.scm (libvdpau-va-gl): New variable. * gnu/packages/patches/libvdpau-va-gl-unbundle.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: Add knights.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/games.scm (knights): New variable.
* gnu: axoloti-runtime: Update ChibiOS URL.Ricardo Wurmus2017-12-16
| | | | | * gnu/packages/axoloti.scm (axoloti-runtime)[inputs]: Update URL for ChibiOS sources.
* gnu: mod-utilities: Update to 0-2.80ea3ea9f.Ricardo Wurmus2017-12-16
| | | | | * gnu/packages/music.scm (mod-utilities): Update to 0-2.80ea3ea9f. [arguments]: Set PREFIX and CC.
* gnu: gx-vintage-fuzz-master-lv2: Fetch sources from git.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-vintage-fuzz-master-lv2)[source]: Fetch from git.
* gnu: gx-super-fuzz-lv2: Fetch sources from git.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-super-fuzz-lv2)[source]: Fetch from git.
* gnu: gx-voodoo-fuzz-lv2: Fetch sources from gitRicardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-voodoo-fuzz-lv2)[source]: Fetch from git.
* gnu: gx-hyperion-lv2: Fetch sources from git.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-hyperion-lv2)[source]: Fetch from git.
* gnu: gx-suppa-tone-bender-lv2: Fetch sources from git.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-suppa-tone-bender-lv2)[source]: Fetch from git.
* gnu: gx-vbass-preamp-lv2: Inherit phases from gx-guvnor-lv2.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-vbass-preamp-lv2)[arguments]: Remove field.
* gnu: gx-guvnor-lv2: Download sources from git.Ricardo Wurmus2017-12-16
| | | | | * gnu/packages/music.scm (gx-guvnor-lv2)[source]: Download from git. [arguments]: Decouple "install" target from build target.
* gnu: gx-guvnor-lv2: Correct license.Ricardo Wurmus2017-12-16
| | | | * gnu/packages/music.scm (gx-guvnor-lv2)[license]: Use GPLv3+.
* gnu: mutt: Update to 1.9.2.Leo Famulari2017-12-15
| | | | * gnu/packages/mail.scm (mutt): Update to 1.9.2.
* gnu: perl-test-yaml: Update to 1.06.Tobias Geerinckx-Rice2017-12-16
| | | | * gnu/packages/perl-check.scm (perl-test-yaml): Update to 1.06
* gnu: perl-test-trap: Update to 0.3.3.Tobias Geerinckx-Rice2017-12-16
| | | | * gnu/packages/perl-check.scm (perl-test-trap): Update to 0.3.3.
* gnu: perl-test-trailingspace: Update to 0.0301.Tobias Geerinckx-Rice2017-12-16
| | | | * gnu/packages/perl-check.scm (perl-test-trailingspace): Update to 0.0301
* gnu: perl-test-simple: Update to 1.302120.Tobias Geerinckx-Rice2017-12-16
| | | | * gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302120
* gnu: perl-test-most: Update to 0.35.Tobias Geerinckx-Rice2017-12-16
| | | | * gnu/packages/perl-check.scm (perl-test-most): Update to 0.35
* gnu: perl-net-dns: Update to 1.14.Tobias Geerinckx-Rice2017-12-16
| | | | * gnu/packages/networking.scm (perl-net-dns): Update to 1.14
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