| Commit message (Collapse) | Author | Age |
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* gnu/packages/bdw-gc.scm (libgc-8.0): Do not use PACKAGE/INHERIT, because it
does not make sense to inherit any replacements of LIBGC.
(libgc/back-pointers): Use PACKAGE/INHERIT.
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* gnu/packages/cran.scm (r-zseq): New variable.
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* gnu/packages/cran.scm (r-ztype): New variable.
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* gnu/packages/cran.scm (r-zvcv): New variable.
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* gnu/packages/cran.scm (r-zyp): New variable.
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* gnu/packages/cran.scm (r-kendall): New variable.
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* gnu/packages/python-xyz.scm (python-smmap): Rename from python-smmap2, and
update to version 3.0.1.
(python-smmap2, python2-smmap2): Preserve original bindings, marked as
deprecated.
* gnu/packages/version-control.scm (python-gitdb)[propagated-inputs]: Depend
on the new python-smmap package.
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* gnu/packages/version-control.scm (python-gitpython): Update to 3.1.0.
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* gnu/packages/version-control.scm (python-gitdb): Update to 4.0.2.
[source]: Correct the PyPI URL to refer to the actual gitdb package, not a
mirror. This mirror had a problematic setup.py install requirement that
required gitdb>=4.0.1, which would cause run time errors when using snakemake.
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* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.
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* gnu/packages/python-xyz.scm (python-xenon): Update to 0.7.0.
[arguments]: Set #:tests? to #f to disable test suite.
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* gnu/packages/python-xyz.scm (python-radon): Update to 4.1.0.
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* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.3.
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* gnu/packages/python-xyz.scm (python-wget): New variable.
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* gnu/packages/emacs-xyz.scm (emacs-windower): Fix Texinfo code for lists in
description.
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* gnu/packages/statistics.scm (r-forcats): Update to 0.5.0.
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* gnu/packages/statistics.scm (r-testthat): Update to 2.3.2.
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* gnu/packages/cran.scm (r-openmx): Update to 2.17.3.
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* gnu/packages/cran.scm (r-summarytools): Update to 0.9.6.
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* gnu/packages/cran.scm (r-officer): Update to 0.3.7.
[propagated-inputs]: Remove r-base64enc, r-htmltools, r-rcpp, and r-rlang.
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* gnu/packages/bioinformatics.scm (r-seqminer): Update to 8.0.
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* gnu/packages/lisp-xyz.scm (ecl-clunit)[home-page]: Use HTTPS.
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* gnu/packages/geo.scm (mapnik)[home-page]: Use HTTPS.
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* gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.
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* gnu/packages/java.scm (java-plexus-interpolation)[home-page]: Use HTTPS.
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* gnu/packages/music.scm (amsynth)[home-page]: Use HTTPS.
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* gnu/packages/django.scm (pootle)[home-page]: Use HTTPS.
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* gnu/packages/music.scm (muse-sequencer)[home-page]: Follow (HTTPS)
redirection.
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The required libressl version is now stable and more featureful than
openssl.
* gnu/packages/mail.scm (opensmtpd)[inputs]: Replace openssl with libressl.
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* gnu/packages/tls.scm (libressl): Update to 3.0.2.
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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
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* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.6.0.
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* gnu/packages/syncthing.scm (syncthing)[arguments]: Adjust the 'install' phase.
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* gnu/packages/gnome.scm (librsvg-next-source): Don't hardcode patch
version of cargo inputs.
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* gnu/packages/crates-io.scm (rust-diff-0.1): Update to 0.1.12.
[arguments]: Replace rust-quickcheck-0.8 with 0.9 in
cargo-development-inputs.
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* gnu/packages/crates-io.scm (rust-defmac-0.2)[arguments]: Don't skip
build.
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* gnu/packages/crates-io.scm (rust-datetime-0.4)[arguments]: Don't skip
build. Add rust-regex-0.1 to cargo-development-inputs.
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* gnu/packages/crates-io.scm (rust-constant-time-eq-0.1)[arguments]:
Don't skip build.
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* gnu/packages/debian.scm (debootstrap): Update to 1.0.119.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/vim.scm (vim): Update to 8.2.0343.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.
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* gnu/packages/package-management.scm (gwl): Update to 0.2.1.
[arguments]: Add phase "fix-tests".
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