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* gnu: snakemake: Update to 4.2.0.Kyle Meyer2017-10-27
| | | | | | | | * gnu/packages/python.scm (snakemake): Update to 4.2.0. [propagated-inputs]: Add python-appdirs, python-configargparse, python-pyyaml, and python-ratelimiter, which are dependencies as of Snakemake 4.1.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add python-ratelimiter.Kyle Meyer2017-10-27
| | | | | | | * gnu/packages/python.scm (python-ratelimiter, python2-ratelimiter): New variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-configargparse: Update to 0.12.0.Kyle Meyer2017-10-27
| | | | | | | | | | * gnu/packages/python.scm (python-configargparse, python2-configargparse): Update to 0.12.0. [arguments]: Enable tests. [native-inputs]: Add python-pyyaml, which is an optional dependency but required to run the tests. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add python-coloredlogs.ng02017-10-25
| | | | | | | * gnu/packages/python.scm (python-coloredlogs, python2-coloredlogs): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-verboselogs.ng02017-10-25
| | | | | | | * gnu/packages/python.scm (python-verboselogs, python2-verboselogs): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-capturer.ng02017-10-25
| | | | | | | * gnu/packages/python.scm (python-capturer, python2-capturer): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-humanfriendly.ng02017-10-25
| | | | | | | * gnu/packages/python.scm (python-humanfriendly, python2-humanfriendly): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-docutils: Update to 0.14.Leo Famulari2017-10-24
| | | | * gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
* gnu: python-graphene: Disable tests.Tobias Geerinckx-Rice2017-10-23
| | | | | * gnu/packages/python.scm (python-graphene)[native-inputs]: Remove. [arguments]: Disable #:tests.
* gnu: python-chardet: Fix PyPi download location.Marius Bakke2017-10-22
| | | | | | This is a followup to a54cb3ce1f114ee1bc26371d9bc4abb0e04001ef. * gnu/packages/python.scm (python-chardet)[source](uri): Use PYPI-URI.
* gnu: python-chardet: Update to 3.0.4.Cyril Roelandt2017-10-22
| | | | * gnu/packages/python.scm (python-chardet, python2-chardet): Update to 3.0.4.
* gnu: python2-hypothesis: fix propagated inputs.Cyril Roelandt2017-10-22
| | | | | * gnu/packages/python.scm (python2-hypothesis)[propagated-inputs]: Add python2-enum34, which was incorrectly listed among the native inputs.
* gnu: python-hy: Update to 0.13.0.Ricardo Wurmus2017-10-19
| | | | * gnu/packages/python.scm (python-hy): Update to 0.13.0.
* gnu: Add python2-py2neo.Roel Janssen2017-10-17
| | | | * gnu/packages/python.scm (python2-py2neo): New variable.
* gnu: Add python2-neo4j-driver.Roel Janssen2017-10-17
| | | | * gnu/packages/python.scm (python2-neo4j-driver): New variable.
* gnu: python-cffi: Move to libffi.scmEfraim Flashner2017-10-15
| | | | | | | * gnu/packages/python.scm (python-cffi): Move from here ... * gnu/packages/libffi.scm: ... to here. * gnu/packages/crypto.scm, gnu/packages/password-utils.scm: Adjust module imports.
* gnu: python-cffi: Update to 1.11.2.Efraim Flashner2017-10-15
| | | | | * gnu/packages/python.scm (python-cffi): Update to 1.11.2. [home-page]: Use 'https'.
* gnu: python-cffi: Disable test that fails on aarch64.Efraim Flashner2017-10-15
| | | | | * gnu/packages/python.cm (python-cffi)[arguments]: Disable test that is known to fail on aarch64.
* gnu: Add python-pyqrcode.ng02017-10-14
| | | | | | * gnu/packages/python.scm (python-pyqrcode): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-fonttools: Update to 3.15.1.ng02017-10-14
| | | | | | | | * gnu/packages/python.scm (python-fonttools): Update to 3.15.1. (source)[uri]: Use 'pypi-uri'. (native-inputs): Add unzip. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: python-psycopg2: Update to 2.7.3.1.Efraim Flashner2017-10-13
| | | | | * gnu/packages/python.scm (python-psycopg2): Update to 2.7.3.1. [inputs]: Replace postgresql@9.6 with postgresql.
* gnu: python-psycopg2: Use postgresql@9.6.Efraim Flashner2017-10-12
| | | | | * gnu/packages/python.scm (python-psycopg2)[inputs]: Replace postgresql with postgresql@9.6.
* gnu: Add python-jupyter-console as input to python-ipython.Christopher Baines2017-10-12
| | | | | | | | | | | | This fixes running ipython console and ipython3 console, as the jupyter_console package is missing. As python-ipython is an input to python-jupyter-console, use a modified version of the package which doesn't have this input. * gnu/packages/python.scm (python-jupyter-console-minimal): New variable. (python-ipython)[propagated-inputs]: Replace python-jupyter-console with python-jupyter-console-minimal.
* gnu: python-rpy2: Ignore test results.Ricardo Wurmus2017-10-11
| | | | * gnu/packages/python.scm (python-rpy2)[arguments]: Ignore test failures.
* gnu: python-twisted: Update to 17.1.0.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-twisted): Update to 17.1.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-incremental.Troy Sankey2017-10-10
| | | | | | | * gnu/packages/python.scm (python-incremental, python2-incremental): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-automat.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-automat, python2-automat): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-m2r.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-m2r, python2-m2r): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-constantly.Troy Sankey2017-10-10
| | | | | | | * gnu/packages/python.scm (python-constantly, python2-constantly): New variables. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-attrs.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-attrs, python2-attrs): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* Merge branch 'staging'Marius Bakke2017-10-10
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| * Merge branch 'master' into stagingMarius Bakke2017-10-06
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| * \ Merge branch 'master' into stagingMarius Bakke2017-10-05
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| * \ \ Merge branch 'master' into stagingMarius Bakke2017-09-24
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| * | | | gnu: Use 'modify-phases' syntax.Kei Kebreau2017-09-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal, wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use 'modify-phases' syntax. * gnu/packages/algebra.scm (arb)[arguments]: Likewise. * gnu/packages/apr.scm (apr-util)[arguments]: Likewise. * gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano, lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound, zita-convolver, zita-alsa-pcmi)[arguments]: Likewise. * gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express, flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise. * gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise. * gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise. * gnu/packages/compression.scm (sharutils)[arguments]: Likewise. * gnu/packages/conky.scm (conky)[arguments]: Likewise. * gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise. * gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise. * gnu/packages/display-managers.scm (slim)[arguments]: Likewise. * gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise. * gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise. * gnu/packages/engineering.scm (pcb)[arguments]: Likewise. * gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise. * gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise. * gnu/packages/fltk.scm (fltk)[arguments]: Likewise. * gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise. * gnu/packages/gd.scm (perl-gd)[arguments]: Likewise. * gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise. * gnu/packages/glib.scm (glibmm)[arguments]: Likewise. * gnu/packages/gl.scm (glew)[arguments]: Likewise. * gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs, libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise. * gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise. * gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise. * gnu/packages/graphics.scm (agg)[arguments]: Likewise. * gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present, python2-pycairo)[arguments]: Likewise. * gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise. * gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise. * gnu/packages/hugs.scm (hugs)[arguments]: Likewise. * gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal) [arguments]: Likewise. * gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise. * gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static, lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools) [arguments]: Likewise. * gnu/packages/lisp.scm (ccl)[arguments]: Likewise. * gnu/packages/lout.scm (lout)[arguments]: Likewise. * gnu/packages/lua.scm (luajit)[arguments]: Likewise. * gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise. * gnu/packages/mail.scm (exim)[arguments]: Likewise. * gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise. * gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun) [arguments]: Likewise. * gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise. * gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise. * gnu/packages/music.scm (solfege)[arguments]: Likewise. * gnu/packages/noweb.scm (noweb)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]: Likewise. * gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu, zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise. * gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]: Likewise. * gnu/packages/photo.scm (gphoto2)[arguments]: Likewise. * gnu/packages/popt.scm (popt)[arguments]: Likewise. * gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]: Likewise. * gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise. * gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy, python-sqlalchemy, python-docopt)[arguments]: Likewise. * gnu/packages/rdf.scm (lrdf)[arguments]: Likewise. * gnu/packages/regex.scm (tre)[arguments]: Likewise. * gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise. * gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise. * gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise. * gnu/packages/scheme.scm (racket)[arguments]: Likewise. * gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise. * gnu/packages/serveez.scm (serveez)[arguments]: Likewise. * gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise. * gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise. * gnu/packages/tcl.scm (expect)[arguments]: Likewise. * gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise. * gnu/packages/textutils.scm (recode, libgtextutils)[arguments]: Likewise. * gnu/packages/time.scm (time)[arguments]: Likewise. * gnu/packages/tor.scm (privoxy)[arguments]: Likewise. * gnu/packages/uucp.scm (uucp)[arguments]: Likewise. * gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise. * gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise. * gnu/packages/web.scm (tinyproxy)[arguments]: Likewise. * gnu/packages/wicd.scm (wicd)[arguments]: Likewise. * gnu/packages/wm.scm (bspwm)[arguments]: Likewise. * gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise. * gnu/packages/xfce.scm (xfconf)[arguments]: Likewise. * gnu/packages/xfig.scm (transfig)[arguments]: Likewise. * gnu/packages/xorg.scm (imake)[arguments]: Likewise.
* | | | | gnu: python2-unittest2: Update to 1.1.0.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-unittest2): Update to 1.1.0. * gnu/packages/patches/python2-unittest2-remove-argparse.patch: New file. * gnu/local.mk: Add it.
* | | | | gnu: Add python-traceback2.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-traceback2, python2-traceback2): New variables.
* | | | | gnu: Add python-linecache2.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-linecache2, python2-linecache2): New variables.
* | | | | gnu: python-netaddr: Fix the source URL.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-netaddr, python2-netaddr): Fix the source URL.
* | | | | gnu: Add python2-aniso8601.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-aniso8601): New variable.
* | | | | gnu: python-aniso8601: Update to 1.3.0.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-aniso8601, python2-aniso8601): Update to 1.3.0.
* | | | | gnu: python-alembic: Update to 0.9.5.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-alembic, python2-alembic): Update to 0.9.5.
* | | | | gnu: python-arrow: Update to 0.10.0.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-arrow, python2-arrow): Update to 0.10.0.
* | | | | gnu: python-apispec: Update to 0.25.3.Cyril Roelandt2017-10-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-apispec, python2-apispec): Update to 0.25.3.
* | | | | gnu: Add python-guzzle-sphinx-theme.Leo Famulari2017-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-guzzle-sphinx-theme, python2-guzzle-sphinx-theme): New variables. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
* | | | | gnu: Add missing input to python-py3status and fix call path.Tomáš Čech2017-10-08
| |_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | file is used to determine configuration file encoding and py3status fails to start when this tool is missing. * gnu/packages/python.scm (python-py3status)[inputs]: Add file. [arguments]: Modify phases to patch py3status to call file with an absolute path.
* | | | gnu: Add python-numpy-next.Ricardo Wurmus2017-10-05
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-numpy-next, python2-numpy-next): New variables.
* | | | Revert "gnu: python-numpy: Update to 1.13.1."Ricardo Wurmus2017-10-05
| |_|/ |/| | | | | | | | | | | | | | | | | This reverts commit 025b196d9b739418dd9d305864fdb1fb1d0d5af2. This is necessary as neither the current release nor the latest development version of python-pandas can be build with numpy 1.13.x.
* | | gnu: python-numexpr: Update to 2.6.4.Ricardo Wurmus2017-10-04
| | | | | | | | | | | | * gnu/packages/python.scm (python-numexpr): Update to 2.6.4.
* | | gnu: python-numpy: Give sh store location instead of setting $SHELL.Thomas Danckaert2017-10-04
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-numpy): [arguments] Don't set $SHELL in the environment, but embed the store location of bash-minimal as a default shell. Otherwise, we have to set $SHELL for every package which uses numpy's distutils.
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