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* Merge branch 'master' into core-updatesMarius Bakke2021-06-19
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Note: this merge actually changes the 'curl' and 'python-attrs' derivations, as part of solving caf4a7a2770ef4d05a6e18f40d602e51da749ddc and 12964df69a99de6190422c752fef65ef813f3b6b respectively. 4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it cannot currently be tested. Conflicts: gnu/local.mk gnu/packages/aidc.scm gnu/packages/boost.scm gnu/packages/curl.scm gnu/packages/nettle.scm gnu/packages/networking.scm gnu/packages/python-xyz.scm gnu/packages/tls.scm
| * gnu: python-miniboa: Update to 1.0.8.Arun Isaac2021-06-18
| | | | | | | | * gnu/packages/python-xyz.scm (python-miniboa): Update to 1.0.8.
| * gnu: python-pygit2: Update to 1.6.0.Xinglu Chen2021-06-15
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-pygit2): Update to 1.6.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: Rename qtbase to qtbase-5.Maxim Cournoyer2021-06-14
| | | | | | | | | | | | | | | | | | | | | | | | This change was automated via the following command: $ git ls-files | xargs sed -i 's/,qtbase)/,qtbase-5)/g' $ git ls-files | xargs sed -i 's/inherit qtbase)/inherit qtbase-5)/g' $ git ls-files | xargs sed -i 's/package-version qtbase)/package-version qtbase-5)/g' $ git checkout etc # to clear some spurious changes This is done so the qtbase package can be upgraded to version 6 in the following commit.
| * gnu: python-pyzmq: Update to 22.1.0.Vinicius Monego2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-pyzmq): Update to 22.1.0. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python-pyzmq: Enable tests.Vinicius Monego2021-06-08
| | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-pyzmq)[arguments]: Remove #:tests?. Add new 'build-extensions' phase to build Cython extensions before tests. [native-inputs]: Remove python-nose. Add python-cython and python-pytest. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python-toolz: Update to 0.11.1.Vinicius Monego2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-toolz): Update to 0.11.1. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python-toolz: Enable tests.Vinicius Monego2021-06-08
| | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-toolz)[arguments]: Remove #:tests?. Override check phase. [native-inputs]: Add python-pytest. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: ptpython: Update to 3.0.17.Vinicius Monego2021-06-08
| | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (ptpython): Update to 3.0.17. [propagated-inputs]: Add python-black. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python-prompt-toolkit: Update to 3.0.18.Vinicius Monego2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-prompt-toolkit): Update to 3.0.18. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python2-partd: Remove package.zimoun2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python2-partd): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python2-numpy-documentation: Remove package.zimoun2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python2-numpy-documentation): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python2-hdf4: Remove package.zimoun2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python2-hdf4): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python2-gridmap: Remove package.zimoun2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python2-gridmap): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python2-fastimport: Remove package.zimoun2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python2-fastimport): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python2-bigfloat: Remove package.zimoun2021-06-08
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python2-bigfloat): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: python-mappy: Move to (gnu packages bioinformatics).Efraim Flashner2021-06-08
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-mappy): Move to ... * gnu/packages/bioinformatics.scm: ... here.
| * gnu: python-pikepdf: Update to 2.12.2.Nicolas Goaziou2021-06-07
| | | | | | | | * gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.12.2.
| * gnu: Add python-rich.Ricardo Wurmus2021-06-07
| | | | | | | | * gnu/packages/python-xyz.scm (python-rich): New variable.
| * gnu: python-dataclasses: Update to 0.8.Ricardo Wurmus2021-06-07
| | | | | | | | * gnu/packages/python-xyz.scm (python-dataclasses): Update to 0.8.
| * gnu: python-attrs: Update to 21.2.0.Ricardo Wurmus2021-06-07
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0. (python-attrs-bootstrap): Keep this at 19.3.0 to avoid mass rebuilds.
| * gnu: python-attrs: Conditionally execute tests.Ricardo Wurmus2021-06-07
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-attrs)[arguments]: Wrap "check" phase in conditional expression.
* | gnu: python-magic: Update to 0.4.22.Marius Bakke2021-06-13
| | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-magic): Update to 0.4.22. [source]: Switch to GIT-FETCH. [arguments]: Remove #:tests?. Adjust substitution and override check phase. Remove obsolete phase. [native-inputs]: Add WHICH.
* | gnu: python-attrs: Update to 21.2.0.Marius Bakke2021-06-13
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0. [native-inputs]: Remove PYTHON-SPHINX and PYTHON-ZOPE-INTERFACE.
* | Merge branch 'master' into core-updatesMarius Bakke2021-06-06
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/local.mk gnu/packages/algebra.scm gnu/packages/bioinformatics.scm gnu/packages/curl.scm gnu/packages/docbook.scm gnu/packages/emacs-xyz.scm gnu/packages/maths.scm gnu/packages/plotutils.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/readline.scm gnu/packages/tls.scm gnu/packages/xml.scm gnu/packages/xorg.scm
| * gnu: Add python-asn1tools.Hartmut Goebel2021-06-06
| | | | | | | | * gnu/packages/python-xyz.scm (python-asn1tools): New variable.
| * gnu: Add python-sparse.Mădălin Ionel Patrașcu2021-06-06
| | | | | | | | * gnu/packages/python-xyz.scm(python-sparse): New variable.
| * gnu: python-pypandoc: Use patched texlive-amsfonts.Ricardo Wurmus2021-06-05
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-pypandoc)[native-inputs]: Use texlive-amsfonts/patched.
| * gnu: python-ipython-documentation: Use patched texlive-amsfonts.Ricardo Wurmus2021-06-05
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-ipython-documentation)[native-inputs]: Use texlive-amsfonts/patched.
| * gnu: python-matplotlib-documentation: Use patched texlive-amsfonts.Ricardo Wurmus2021-06-05
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]: Use texlive-amsfonts/patched.
| * gnu: python-numpy-documentation: Use patched texlive-amsfonts.Ricardo Wurmus2021-06-05
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Use texlive-amsfonts/patched.
| * gnu: python-anndata: Update to 0.7.6.Roel Janssen2021-06-04
| | | | | | | | * gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6.
| * gnu: python-pydantic: Update to 1.8.2.Marius Bakke2021-06-04
| | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-pydantic): Update to 1.8.2. [arguments]: Disable some new tests. [native-inputs]: Add PYTHON-PYTEST-MOCK. [propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS.
| * gnu: Add python-sinfo.Roel Janssen2021-06-01
| | | | | | | | * gnu/packages/python-xyz.scm (python-sinfo): New variable.
| * gnu: Add python-stdlib-list.Roel Janssen2021-06-01
| | | | | | | | * gnu/packages/python-xyz.scm (python-stdlib-list): New variable.
| * gnu: Add python-easy-ansi.Stefan Reichör2021-05-31
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-easy-ansi): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| * gnu: python-fastjsonschema: Update to 2.15.1.Tobias Geerinckx-Rice2021-05-30
| | | | | | | | * gnu/packages/python-xyz.scm (python-fastjsonschema): Update to 2.15.1.
| * gnu: python-cookiecutter: Update to 1.7.3.Tobias Geerinckx-Rice2021-05-30
| | | | | | | | * gnu/packages/python-xyz.scm (python-cookiecutter): Update to 1.7.3.
| * gnu: Add python-cachetools.Roel Janssen2021-05-28
| | | | | | | | * gnu/packages/python-xyz.scm (python-cachetools): New variable.
| * gnu: Add python-argopt.Roel Janssen2021-05-28
| | | | | | | | * gnu/packages/python-xyz.scm (python-argopt): New variable.
| * gnu: Add python-helper.Roel Janssen2021-05-27
| | | | | | | | * gnu/packages/python-xyz.scm (python-helper): New variable.
| * gnu: Add python-logutils.Roel Janssen2021-05-27
| | | | | | | | * gnu/packages/python-xyz.scm (python-logutils): New variable.
| * gnu: Add python-simpervisor.Efraim Flashner2021-05-27
| | | | | | | | * gnu/packages/python-xyz.scm (python-simpervisor): New variable.
| * gnu: python2-shapely: Remove package.Björn Höfling2021-05-25
| | | | | | | | * gnu/packages/python-xyz.scm (python2-shapely): Delete variable.
| * gnu: python-matplotlib: Don't hardcode python version.Efraim Flashner2021-05-24
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib)[arguments]: In custom 'install-jquery-ui phase programmatically get the version of python.
| * gnu: python-nltk: Add missing inputs.Efraim Flashner2021-05-24
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-nltk)[propagated-inputs]: Add python-click, python-joblib, python-regex, python-tqdm.
| * gnu: python-nltk-3.4: Add missing input.Efraim Flashner2021-05-24
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-nltk-3.4)[propagated-inputs]: Add python-six.
| * gnu: Fix erroneous uses of 'package/inherit'.Marius Bakke2021-05-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | These packages use a different source/version from the inherited package, and thus should not inherit replacements. * gnu/packages/check.scm (googletest-1.8, python-pytest-runner-2): Use record inheritance instead of PACKAGE/INHERIT. * gnu/packages/crates-io.scm (rust-bindgen-0.49, rust-bytes-0.4, rust-colored-1.9.1, rust-difference-1, rust-docopt-0.8, rust-html5ever-0.23, rust-http-0.1, rust-http-body-0.1, rust-loom-0.2, rust-loom-0.1, rust-pulldown-cmark-0.0.8, rust-ring-0.13, rust-rustls-0.12, rust-sct-0.3, rust-term-0.2, rust-untrusted-0.6, rust-webpki-0.18, rust-webpki-roots-0.17, rust-webpki-roots-0.14): Likewise. * gnu/packages/emacs.scm (emacs-next, emacs-next-pgtk, guile-emacs): Likewise. * gnu/packages/guile.scm (guile-2.2.4): Likewise. * gnu/packages/maths.scm (hdf5-1.10, hdf5-1.12): Likewise. * gnu/packages/protobuf.scm (protobuf-3.6, protobuf-3.5, python-protobuf-3.6): Likewise. * gnu/packages/python-web.scm (python2-html2text): Likewise. * gnu/packages/python-xyz.scm (python-pygments/fixed, python2-numpy, python2-urwid, python2-markdown, python2-fonttools): Likewise. * gnu/packages/racket.scm (racket): Likewise. * gnu/packages/sequoia.scm (sequoia4pEp): Likewise.
| * gnu: Remove python2-ipython-cluster-helper.Marius Bakke2021-05-22
| | | | | | | | | | | | | | Some of its requirements no longer support Python 2 which has left this package broken for a while. * gnu/packages/python-xyz.scm (python2-ipython-cluster-helper): Remove variable.
| * gnu: Remove python2-notebook.Marius Bakke2021-05-22
| | | | | | | | | | | | | | | | Some of its requirements no longer support Python 2 which has left this package broken for a while. * gnu/packages/python-xyz.scm (python2-notebook): Remove variable. (python-notebook)[properties]: Remove.
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