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* gnu: python-pari-jupyter: Do not propagate 'python-ipykernel'.Ludovic Courtès2022-05-16
| | | | | | | | | Failing that, Guix-Jupyter sees both kernels in environments containing python-pari-jupyter and its ";;guix environment" command thus fails. * gnu/packages/python-xyz.scm (python-pari-jupyter)[propagated-inputs]: Move PYTHON-IPYKERNEL to... [inputs]: ... here.
* gnu: python-jupyter-console: Depend on python-prompt-toolkit 3.x.Ludovic Courtès2022-05-16
| | | | | | | Fixes <https://issues.guix.gnu.org/55448>. * gnu/packages/python-xyz.scm (python-jupyter-console)[propagated-inputs]: Change 'python-prompt-toolkit-2' to 'python-prompt-toolkit'.
* gnu: python-jupyter-console-minimal: Use 'modify-inputs'.Ludovic Courtès2022-05-16
| | | | | * gnu/packages/python-xyz.scm (python-jupyter-console-minimal)[propagated-inputs]: Use 'modify-inputs'.
* gnu: Fix the build of wicd.Leo Famulari2022-05-15
| | | | | | | | | Fixes <https://issues.guix.gnu.org/55440>. * gnu/packages/check.scm (python2-pytest-cov, python2-freezegun): Define without package-with-python2. * gnu/packages/python-xyz.scm (python2-babel): Likewise. * gnu/packages/time.scm (python2-dateutil): Likwise.
* gnu: python-scikit-build: Fix build.Maxim Cournoyer2022-05-12
| | | | | * gnu/packages/python-xyz.scm (python-scikit-build) [phases]{check}: Add forgotten trailing spaces.
* gnu: python-multidict: Update to 5.2.0.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-multidict): Update to 5.2.0.
* gnu: python-matplotlib: Update to 3.5.2.Maxim Cournoyer2022-05-12
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.5.2. [propagated-inputs]: Move after 'arguments' field. Use new style and re-order. [inputs]: Order lexicographically. [native-inputs]: Use new style. [phases]{fix-and-disable-failing-tests}: Fix indentation. Delete the 'lib/matplotlib/tests/test_animation.py' test. {check}: Skip the test_lazy_auto_backend_selection test.
* gnu: python-pygments: Update to 2.12.0.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-pygments): Update to 2.12.0.
* gnu: python-qtconsole: Update to 5.3.0.Lars-Dominik Braun2022-05-12
| | | | | | | * gnu/packages/python-xyz.scm (python-qtconsole): Update to 5.3.0. [native-inputs]: Add python-pytest-qt. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
* gnu: python-matplotlib-documentation: Fix build.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib-documentation): Inherit from python-matplotlib. [version, source, build-system, home-page, description, license]: Delete fields, now inherited. [phases]: Streamline build and install phases and enable parallel build. [native-inputs]: Use new style. Remove python-matplotlib, python-ipykernel, python-mock, texlive-enumitem, texlive-latex-geometry, texlive-latex-preview, texlive-latex-ucs, texlive-pdftex, texlive-fonts-ec, texlive-txfonts and inherited python-matplotlib packages. Add inkscape, python-mpl-sphinx-theme, python-scipy, python-ipywidgets, texlive-babel, texlive-fontspec, texlive-unicode-math, texlive-etoolbox, and texlive-underscore.
* gnu: python-pudb: Update to 2022.1.1 and rename from pudb.Maxim Cournoyer2022-05-12
| | | | | | | | | | | Renaming rationale: pudb can also be used as a Python library (like pdb). * gnu/packages/python-xyz.scm (python-pudb): Update to 2022.1.1. [phases]{check}: Remove obsolete 'add-installed-pythonpath' call. Invoke pytest verbosely. [native-inputs]: Remove python-numpy. [propagated-inputs]: Apply guix style. (pudb): Define as a deprecated alias to python-pudb.
* gnu: Add python-ipdb.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-ipdb): New variable.
* gnu: python-numpy-documentation: Overhaul package definition.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-numpy-documentation): Relocate next to the python-numpy package in the module. Inherit from python-numpy. [version, source, build-system, home-page, license]: Remove fields, now inherited. [phases]{add-gnu-freefont-to-texmf}: New phase. {install}: Patch conf.py to allow building the info manual. Set HOME. Copy the whole generated HTML directory. Parallelize documentation build. [native-inputs]: Use new style. Add font-gnu-freefont, fontconfig, python-breathe, python-ipython, python-pandas, python-pydata-sphinx-theme, python-scipy, python-sphinx-panels, texlive-bin, texlive-cbfonts, texlive-cm-super, texlive-greek-fontenc, texlive-latex-expdlist, texlive-polyglossia and texlive-xindy. Remove pkg-config, the previous "texlive" updmap.cfg package, scipy-sphinx-theme, and do not inherit the native inputs of python-numpy. [synopsis]: Refine. [description]: Expound a bit.
* gnu: python-numpydoc: Update to 1.2.1.Maxim Cournoyer2022-05-12
| | | | | | | * gnu/packages/python-xyz.scm (python-numpydoc): Update to 1.2.1. Fix indentation. [phases]{relax-requirements}: New phase. [propagated-inputs]: Add python-jinja2.
* gnu: dynaconf: Fix build following python-click upgrade.Maxim Cournoyer2022-05-12
| | | | | | | * gnu/packages/python-xyz.scm (dynaconf) [phases]{patch-for-click-8}: New phase. {check}: Remove extraneous setenv call. [native-inputs]: Use the regular python-pytest variable.
* gnu: python-croniter: Update to 1.3.4.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-croniter): Update to 1.3.4.
* gnu: Remove python2-jmespath.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python2-jmespath): Delete variable.
* gnu: python-cantools: Update to 37.0.7.Maxim Cournoyer2022-05-12
| | | | | | | | | | | * gnu/packages/python-xyz.scm (python-cantools): Update to 37.0.7. [arguments]: Use gexps. [phases]: Strip trailing #t. {build-doc}: Use make -C instead of with-directory-excursion. {install-doc}: Adjust for gexp. [native-inputs]: Use new style. [propagated-inputs]: Add python-argparse-addons, python-crccheck, python-matplotlib and python-parameterized.
* gnu: Add python-crccheck.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-crccheck): New variable.
* gnu: python-mkdocs: Update to 1.3.0.Maxim Cournoyer2022-05-12
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-mkdocs): Update to 1.3.0. [source]: Use git. [phases]{check}: New override. [propagated-inputs]: Remove python-livereload, python-lunr and python-tornado. Add python-babel, python-ghp-import, python-importlib-metadata, python-markupsafe, python-mdx-gh-links, python-mergedeep, python-packaging, python-pyyaml-env-tag and python-watchdog.
* gnu: Add python-mdx-gh-links.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-mdx-gh-links): New variable.
* gnu: Add python-pyyaml-env-tag.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-pyyaml-env-tag): New variable.
* gnu: Add python-mergedeep.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-mergedeep): New variable.
* gnu: python-multipart: Fix build with PyYAML 6.Maxim Cournoyer2022-05-12
| | | | | * gnu/packages/python-xyz.scm (python-multipart) [phases]{patch-test-suite}: Substitute yaml.load for yaml.safe_load.
* gnu: Add python-toolrack.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-toolrack): New variable.
* gnu: python-bitstruct: Update to 8.14.0.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-bitstruct): Update to 8.14.0.
* gnu: Add python-argparse-addons.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-argparse-addons): New variable.
* gnu: python-celery: Update to 5.2.6 and enable tests.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-celery): Update to 5.2.6. [tests?]: Delete argument. [phases]{delete-integration-tests}: Delete phase. {relax-requirements}: New phase. {check}: Ignore the "t/integration" directory and the t/unit/backends/test_mongodb.py file. Remove skip directive for test_all_reqs_enabled_in_tests. [native-inputs]: Add python-dnspython. [propagated-inputs]: Delete python-boto3 and python-cryptography.
* gnu: python-kombu: Update to 5.2.4.Maxim Cournoyer2022-05-12
| | | | | | | * gnu/packages/python-xyz.scm (python-kombu): Update to 5.2.4. [phases]{delete-transport-tests}: Delete phase. {check}: New phase. [native-inputs]: Remove python-mock.
* gnu: python-amqp: Update to 5.1.1 and enable tests.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/python-xyz.scm (python-amqp): Update to 5.1.1. [arguments]: New field. [native-inputs]: Add python-pytest.
* gnu: python-can: Update to 4.0.0.Maxim Cournoyer2022-05-12
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-can): Update to 4.0.0. [phases]: Strip trailing #t. {relax-version-requirements}: Relax pytest-cov requirement. {check}: Override phase. [propagated-inputs]: Remove python-aenum. Add python-msgpack and python-typing-extensions. [native-inputs]: Add python-parameterized.
* gnu: Add python-bson.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-bson): New variable.
* gnu: python-parse-type: Update to 0.6.0, fixing build.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/python-xyz.scm (python-parse-type): Update to 0.6.0. [arguments]: New field. [native-inputs]: Remove python-pytest-runner and python-setuptools.
* gnu: python-readme-renderer: Update to 34.0.Maxim Cournoyer2022-05-12
| | | | | * gnu/packages/python-xyz.scm (python-readme-renderer): Update to 34.0. [phases]{check}: Skip GFM tests for now.
* gnu: python-types-dataclasses: Fix typo.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-types-dataclasses): Fix typo in description.
* gnu: python-numba: Update to 0.55.1.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-numba): Update to 0.55.1.
* gnu: python-numpy: Update to 1.21.6 and parallelize build/tests.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-numpy): Update to 1.21.6. Move inputs and native-inputs fields after arguments. Use gexps. [modules]: New argument. [phases]{parallelize-build}: New phase. {configure-blas}: Format via (ice-9 format). {fix-executable-paths}: Use search-file-input. Remove obsolete system_info.py substitution. {check}: Remove extraneous add-installed-pythonpath and setenv calls. Provide the '-n' pytest-xdist option. [native-inputs]: Use python-hypothesis-next. (python-numpy-next): Inherit from python-numpy. (python2-numpy): Adjust for gexps. [phases]{delete-failing-test}: Rename to... {delete-failing-tests}: ... this. (python2-numpy-1.8): Likewise, and delete 'delete-failing-tests' phase. Disable tests. [native-inputs]: Define as the empty list.
* gnu: Add python-dictpath.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-dictpath): New variable.
* gnu: Add python-rfc3339-validator.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-rfc3339-validator): New variable.
* gnu: Add python-strict-rfc3339.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-strict-rfc3339): New variable.
* gnu: python-ipython-documentation: Also build info and pdf targets.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | * gnu/packages/patches/python-ipython-documentation-chars.patch: New file. * gnu/packages/patches/python-ipython-documentation-repro.patch: Likewise. * gnu/local.mk: Register them. * gnu/packages/python-xyz.scm (python-ipython-documentation) [source]: Apply patches. [arguments]: Use gexps. [phases]{sanitize-sources}: New phase. {configure-sphinx-for-xelatex}: Likewise. {install}: Streamline. Also build and install the PDF and info manual. Enable parallel processing. [inputs]: Delete field. [propagated-inputs]: Remove texlive-updmap.cfg input. Add fontconfig, font-gnu-freefont, graphviz, python-docrepr, texlive-polyglossia, texlive-bin and texlive-xindy.
* gnu: Add python-pep621.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-pep621): New variable.
* gnu: python-notebook: Update to 6.4.10.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/python-xyz.scm (python-notebook): Update to 6.4.10. [phases]{check}: Remove add-installed-pythonpath. [native-inputs]: python-nest-asyncio.
* gnu: python-send2trash: Update to 1.8.0 and update home page.Maxim Cournoyer2022-05-12
| | | | | | | | | | | * gnu/packages/python-xyz.scm (python-send2trash): Update to 1.8.0. [source]: Update Git URL. [phases]{pre-check}: Set HOME to /tmp directly. {check}: Override phase. [native-inputs]: Add python-pytest. [properties]: Delete field. (python2-send2trash): Delete variable. [home-page]: Update URL.
* gnu: python-nbconvert: Update to 6.5.0.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.5.0. [arguments]: Use gexps. [phases]{fix-paths-and-tests}: Rename to... {fix-paths}: ... this. Find inputs via search-input-file. Patch inskcape file name. Disable tests in... {check}: ... this phase instead. Do not set HOME. Execute installed test suite. Run tests in parallel. Disable and not test_execute_widgets_from_nbconvert and test_execute_multiple_notebooks tests. [inputs]: Add inkscape. [native-inputs]: Delete python-pytest-cov and python-pytest-dependency. Use new style. [propagated-inputs]: Add python-beautifulsoup4. Reduce the texlive packages part of the generated updmap.cfg input, moving them to regular propagated inputs. Add texlive-unicode-math and texlive-lm-math.
* gnu: python-bleach: Update to 5.0.0.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/python-xyz.scm (python-bleach): Update to 5.0.0. [propagated-inputs]: Remove python-packaging and python-six. Add python-tinycss2.
* gnu: python-anyio: Replace python-pytest-trio with python-trio.Maxim Cournoyer2022-05-12
| | | | | | | | * gnu/packages/python-xyz.scm (python-anyio) [phases]{check}: Remove extraneous add-installed-pythonpath call. Expound comment about IPv6 issues. [native-inputs]: Use regular python-pytest. Replace python-pytest-trio by python-trio.
* gnu: python-ipyparallel: Update to 8.2.1.Maxim Cournoyer2022-05-12
| | | | | | | | | * gnu/packages/python-xyz.scm (python-ipyparallel-bootstrap): Update to 8.2.1. [propagated-inputs]: Add python-entrypoints, python-psutil and python-tqdm. Update python-tornado to version 6. (python-ipyparallel)[phases]{check}: Override phase. [native-inputs]: Remove python-mock and python-nose. Add python-pytest-asyncio and python-pytest-tornado.
* gnu: python-ipykernel: Update to 6.13.0.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-ipykernel): Update to 6.13.0. [origin]: Fix indentation. [phases]: Use gexps. {check}: Invoke pytest via tini {set-python-file-name}: Adjust to use search-input-file. [propagated-inputs]: Add python-debugpy, python-matplotlib-inline and python-psutil. [native-inputs]{python-nose}: Delete. {python-ipyrallel-bootstrap}: New native input. {python-pytest}: Replace with... {python-pytest-bootstrap}: ... this. {python-pytest-timeout, tini}: New native inputs.
* gnu: python-jupyter-client: Update to 7.2.2.Maxim Cournoyer2022-05-12
| | | | | | | | | * gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap): Make the base package definition, moving most fields. Update to 7.2.2. [propagated-inputs]: Add python-entrypoints and python-nest-asyncio. (python-jupyter-client): Inherit from python-jupyter-client-bootstrap, adjusting accordingly. [native-inputs]: Add python-pytest-asyncio.