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* gnu: python-ipython: Fix CVE detection.Efraim Flashner2022-02-01
| | | | * gnu/packages/python-xyz.scm (python-ipython)[properties]: New field.
* gnu: python-seaborn: Fix build.Ricardo Wurmus2022-01-31
| | | | | | | * gnu/packages/python-xyz.scm (python-seaborn)[source]: Add patch. [arguments]: Add build phase 'patch-more-tests. * gnu/packages/patches/python-seaborn-2690.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: python-anndata: Update to 0.7.8.Ricardo Wurmus2022-01-31
| | | | | | | * gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.8. [arguments]: Embed the appropriate version string instead of letting it try (and fail) to discover the correct string at load time. [propagated-inputs]: Add python-xlrd-1.
* gnu: Add python-xlrd-1.Ricardo Wurmus2022-01-31
| | | | * gnu/packages/python-xyz.scm (python-xlrd-1): New variable.
* gnu: python-black: Document the tomli version requirements.Leo Famulari2022-01-29
| | | | * gnu/packages/python-xyz.scm (python-black): Add comment.
* gnu: python-pydantic: Update to 1.9.0.Marius Bakke2022-01-29
| | | | * gnu/packages/python-xyz.scm (python-pydantic): Update to 1.9.0.
* gnu: Add wfetch.Petr Hodina2022-01-28
| | | | | | * gnu/packages/python-xyz.scm (wfetch): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-geojson.Petr Hodina2022-01-28
| | | | | | * gnu/packages/python-xyz.scm (python-geojson): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Properly deprecate texlive-generic-ulem.Nicolas Goaziou2022-01-28
| | | | | | | * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/maths.scm (hypre): Apply deprecation. * gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation command.
* gnu: Remove occurrences of deprecated texlive-latex-capt-of.Nicolas Goaziou2022-01-28
| | | | | | * gnu/packages/maths.scm (hypre): * gnu/packages/python-xyz.scm (python-numpy-documentation): (python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
* gnu: texlive-latex-enumitem: Deprecate package.Nicolas Goaziou2022-01-28
| | | | | | * gnu/packages/tex.scm (texlive-latex-enumitem): Deprecate in favor of texlive-enumitem. * gnu/packages/python-xyz.scm (python-matplotlib-documentation): (python-nbconvert): Apply deprecation.
* gnu: Add python-esprima.Danny Milosavljevic2022-01-25
| | | | * gnu/packages/python-xyz.scm (python-esprima): New variable.
* gnu: python-pillow-simd: Update to 9.0.0.base-for-series-11102base-for-series-11099base-for-series-11094base-for-series-11093base-for-series-11092base-for-series-11090Efraim Flashner2022-01-23
| | | | | * gnu/packages/python-xyz.scm (python-pillow-simd): Update to 9.0.0. [arguments]: Remove field.
* gnu: python-pillow: Remove input labels.Efraim Flashner2022-01-23
| | | | * gnu/packages/python-xyz.scm (python-pillow)[inputs]: Remove labels.
* gnu: python-pillow: Update to 9.0.0 (security fixes).Efraim Flashner2022-01-23
| | | | | | * gnu/packages/python-xyz.scm (python-pillow): Update to 9.0.0. [source]: Add snippet to remove bundled code. [arguments]: Adjust custom 'check phase.
* gnu: python-pillow: Add cpe-name.Efraim Flashner2022-01-23
| | | | * gnu/packages/python-xyz.scm (python-pillow)[properties]: Add cpe-name.
* gnu: Add python-setuptools-rust.Marius Bakke2022-01-23
| | | | * gnu/packages/python-xyz.scm (python-setuptools-rust): New variable.
* gnu: Remove python-typing.Marius Bakke2022-01-22
| | | | | * gnu/packages/python-xyz.scm (python-typing): Merge with ... (python2-typing): ... this variable.
* gnu: python-fs: Remove unused input.Marius Bakke2022-01-22
| | | | | * gnu/packages/python-xyz.scm (python-fs)[propagated-inputs]: Remove PYTHON-TYPING.
* gnu: Remove python2-tqdm.Marius Bakke2022-01-22
| | | | * gnu/packages/python-xyz.scm (python2-tqdm): Remove variable.
* gnu: Remove python2-nltk.Marius Bakke2022-01-22
| | | | * gnu/packages/python-xyz.scm (python2-nltk): Remove variable.
* gnu: python-flufl-bounce: Update to 4.0.Marius Bakke2022-01-22
| | | | | | * gnu/packages/python-xyz.scm (python-flufl-bounce): Update to 4.0. [arguments]: Replace check phase. [native-inputs]: Add PYTHON-FLUFL-TESTING.
* gnu: python-watchdog: Remove unused input.Marius Bakke2022-01-22
| | | | | * gnu/packages/python-xyz.scm (python-watchdog)[propagated-inputs]: Remove PYTHON-ARGH.
* gnu: python-tqdm: Update to 4.62.3.Marius Bakke2022-01-22
| | | | * gnu/packages/python-xyz.scm (python-tqdm): Update to 4.62.3.
* gnu: python-pytest-asyncio: Update to 0.17.2.Marius Bakke2022-01-22
| | | | | | | | | * gnu/packages/check.scm (python-pytest-asyncio): Update to 0.17.2. [arguments]: Specify setuptools-scm version. Replace check phase. [native-inputs]: Remove PYTHON-COVERAGE. Add PYTHON-FLAKY and PYTHON-SETUPTOOLS-SCM. * gnu/packages/python-xyz.scm (python-tqdm, python-watchgod)[arguments]: Specify asyncio_mode when running tests.
* gnu: python-tenacity: Update to 8.0.1.Marius Bakke2022-01-22
| | | | | | | * gnu/packages/python-xyz.scm (python-tenacity): Update to 8.0.1. [propagated-inputs]: Remove. [native-inputs]: Add PYTHON-TYPEGUARD. Remove PYTHON-SPHINX. [arguments]: Rewrite in gexp style.
* gnu: Add python-typeguard.Marius Bakke2022-01-22
| | | | * gnu/packages/python-xyz.scm (python-typeguard): New variable.
* gnu: python-cython: Add 3.0.0a10.Marius Bakke2022-01-22
| | | | * gnu/packages/python-xyz.scm (python-cython-3): New variable.
* gnu: Add nbss-upload.jgart via Guix-patches via2022-01-22
| | | | | | * gnu/packages/python-xyz.scm (nbss-upload): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
* gnu: pyzo: Update to 4.12.0.Nicolas Goaziou2022-01-21
| | | | | * gnu/packages/python-xyz.scm (pyzo): Update to 4.12.0. [source]: Get source from GitHub since last release is not available on PyPi.
* gnu: python-fonttools: Fix build failure.Marius Bakke2022-01-19
| | | | | | * gnu/packages/python-xyz.scm (python-fonttools-with-tests)[arguments]: Skip tests that cannot run. [native-inputs]: Fix inheritance.
* gnu: python-xdo: Use libc already in build environment.Efraim Flashner2022-01-19
| | | | | | * gnu/packages/python-xyz.scm (python-xdo)[arguments]: Find reference to 'libc' input. [inputs]: Remove glibc.
* gnu: python-xdo: Hard-code path to libc.Lars-Dominik Braun2022-01-19
| | | | | | | | Fixes: <https://issues.guix.gnu.org/53183> * gnu/packages/python-xyz.scm (python-xdo)[arguments]: Also substitute* reference of libc. [inputs]: Add glibc.
* gnu: python-pyzmq: Update to 22.3.0.Marius Bakke2022-01-19
| | | | * gnu/packages/python-xyz.scm (python-pyzmq): Update to 22.3.0.
* gnu: Add python-roundrobin.Marius Bakke2022-01-19
| | | | * gnu/packages/python-xyz.scm (python-roundrobin): New public variable.
* gnu: Add python-retry.Marius Bakke2022-01-19
| | | | * gnu/packages/python-xyz.scm (python-retry): New public variable.
* gnu: python-flufl-testing: Explicitly disable tests.Marius Bakke2022-01-19
| | | | | * gnu/packages/python-xyz.scm (python-flufl-testing)[arguments]: Add #:tests?. [native-inputs]: Remove.
* gnu: python-peachpy: Fix build.Marius Bakke2022-01-18
| | | | | | * gnu/packages/python-xyz.scm (python-peachpy)[arguments]: Invoke nosetests directly. [native-inputs]: Add PYTHON-SETUPTOOLS.
* gnu: python-dulwich: Update to 0.20.30.Marius Bakke2022-01-18
| | | | | | * gnu/packages/python-xyz.scm (python-dulwich): Update to 0.20.30. [arguments]: Remove workaround. Patch one more file. [native-inputs]: Add GNUPG and PYTHON-GPG.
* gnu: python-parse-type: Update to 0.5.2.Marius Bakke2022-01-18
| | | | | * gnu/packages/python-xyz.scm (python-parse-type): Update to 0.5.2. [native-inputs]: Add PYTHON-SETUPTOOLS.
* gnu: python-kazoo: Update to 2.8.0.Marius Bakke2022-01-18
| | | | * gnu/packages/python-xyz.scm (python-kazoo): Update to 2.8.0.
* gnu: python-rdflib: Update to 6.1.1.Marius Bakke2022-01-18
| | | | | | | | | | | * gnu/packages/rdf.scm (python-rdflib): Update to 6.1.1. [arguments]: Remove #:tests. Add #:phases. [native-inputs]: Change from PYTHON-NOSE to PYTHON-PYTEST. (python-rdflib-5): New variable. (python2-rdflib): Inherit from PYTHON-RDFLIB-5. * gnu/packages/python-xyz.scm (python-prov): Change from PYTHON-RDFLIB to PYTHON-RDFLIB-5. * gnu/packages/bioinformatics.scm (cwltool): Likewise.
* gnu: python-lazr-delegates: Fix test failure.Marius Bakke2022-01-18
| | | | | | * gnu/packages/python-xyz.scm (python-lazr-delegates)[arguments]: Invoke 'nosetests' directly instead of through setup.py. While at it, respect '--without-tests'.
* gnu: python-gevent: Update to 21.12.0.Marius Bakke2022-01-18
| | | | | | * gnu/packages/python-xyz.scm (python-gevent): Update to 21.12.0. [propagated-inputs]: Simplify. Move PYTHON-OBJGRAPH ... [native-inputs]: ... here. Remove PYTHON-SIX.
* gnu: Adjust merge resolution.Marius Bakke2022-01-18
| | | | | | | | | | | | Commit 276f40fdc349d2ad62582b23ea55e061b689cfc0 added unnecessary changes to these variables. * gnu/packages/openstack.scm (python-os-testr)[propagated-inputs]: Remove everything except PYTHON-STESTR. [native-inputs]: Add PYTHON-BABEL, PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS. * gnu/packages/python-xyz.scm (python-platformdirs)[arguments]: Remove obsolete phase. Run pytest verbosely. [native-inputs]: Remove PYTHON-PYTEST-COV.
* gnu: python-dbusmock: Update to 0.25.0 and reap terminated processes.Maxim Cournoyer2022-01-18
| | | | | | | | | | | | | It was reported by abrenon and zimoun in #guix that python-dbusmock would fail to build on their systems. * gnu/packages/python-xyz.scm (python-dbusmock) [imported-modules, modules]: New arguments. [native-inputs]: Use new style. [phases]{check}: Override phase to run it via a dumb init that can handle signals and reap dead processes correctly. This prevents test suite failures in some cases (though it is still unknown why it was working on some systems and not on others before the change).
* gnu: Add python-reedsolo.Lars-Dominik Braun2022-01-18
| | | | | | Missing dependency of python-esptool. * gnu/packages/python-xyz.scm (python-reedsolo): New variable.
* gnu: python-black: Relax tomli version requirement.Maxim Cournoyer2022-01-17
| | | | | * gnu/packages/python-xyz.scm (python-black) [phases]{relax-version-requirements}: New phase.
* gnu: python-async-timeout: Update to 4.0.2.Maxim Cournoyer2022-01-17
| | | | | * gnu/packages/python-xyz.scm (python-async-timeout): Update to 4.0.2. [home-page]: Remove trailing / to please 'guix lint'.
* gnu: python-pystache: Update to 0.6.0.Maxim Cournoyer2022-01-17
| | | | * gnu/packages/python-xyz.scm (python-pystache): Update to 0.6.0.
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