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* Merge branch 'master' into core-updates-frozenMarius Bakke2021-09-17
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/packages/bioinformatics.scm gnu/packages/chez.scm gnu/packages/docbook.scm gnu/packages/ebook.scm gnu/packages/gnome.scm gnu/packages/linux.scm gnu/packages/networking.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/tex.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/dune.scm guix/build-system/go.scm guix/build-system/linux-module.scm guix/packages.scm
| * gnu: Remove python2-natsort.Marius Bakke2021-09-16
| | | | | | | | | | | | | | This package currently fails to build and has no users in Guix. * gnu/packages/python-xyz.scm (python2-natsort): Remove variable. (python-natsort)[properties]: Remove.
| * gnu: python-relatorio: Update to 0.10.0.Hartmut Goebel2021-09-16
| | | | | | | | * gnu/packages/python-xyz.scm (python-relatorio): Update to 0.10.0.
| * gnu: python-natsort: Update to 7.1.1.Marius Bakke2021-09-15
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-natsort): Update to 7.1.1. [arguments]: Remove obsolete phase.
| * gnu: Add python-crontab.Pradana Aumars2021-09-14
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-crontab): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| * gnu: Add texlive-pdftex.Ricardo Wurmus2021-09-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/chez.scm (texlive-pdftex): New variable. (texlive-generic-pdftex): Deprecate in favor of texlive-pdftex. (teximpatient)[native-inputs]: Replace texlive-generic-pdftex with texlive-pdftex. (texlive-latex-pdfx)[propagated-inputs]: Same. * gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Same. (python-matplotlib-documentation)[native-inputs]: Same. (python-ipython-documentation)[native-inputs]: Same. * gnu/packages/chez.scm (chez-web)[native-inputs]: Same. (chez-sockets)[native-inputs]: Same.
| * Revert "gnu: python-pikepdf: Update to 3.0.0."Nicolas Goaziou2021-09-09
| | | | | | | | | | This reverts commit 14bcd6804ffe14613847bf093cc451cedddb02cc. The library fails to build.
| * gnu: python-decorator: Update to 5.0.9.Daniel Meißner2021-09-09
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-decorator): Update to 5.0.9. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| * gnu: python-pikepdf: Update to 3.0.0.Nicolas Goaziou2021-09-09
| | | | | | | | * gnu/packages/python-xyz.scm (python-pikepdf): Update to 3.0.0.
* | gnu: python-stem: Fix tests wth python 3.9.Guillaume Le Vaillant2021-09-11
| | | | | | | | * gnu/packages/python-xyz.scm (python-stem)[arguments]: Add 'fix-tests' phase.
* | gnu: python-faker: Update to 8.12.1.Guillaume Le Vaillant2021-09-11
| | | | | | | | * gnu/packages/python-xyz.scm (python-faker): Update to 8.12.1.
* | gnu: python-random2: Fix building with python 3.9.Guillaume Le Vaillant2021-09-11
| | | | | | | | | | | | * gnu/packages/patches/python-random2-getrandbits-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-random2)[source]: Use it.
* | Merge branch 'master' into core-updates-frozenLudovic Courtès2021-09-07
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| * gnu: python-rarfile: Update to 4.0.Lars-Dominik Braun2021-09-04
| | | | | | | | | | | | | | | | | | | | | | | | | | This package is close to useless, because we lack the non-free unrar utility and the libarchive backend does not support most operations. * gnu/packages/python-xyz.scm (python-rarfile)[version]: Update to 4.0. [arguments]: Disable tests. [propagated-inputs]: Move… [inputs]: …here. [native-inputs]: Add pytest. [#:phases]: Use pytest for 'check and Add 'patch phase. (python2-rarfile): Remove, unsupported by upstream.
| * gnu: python-jellyfish: Update to 0.8.8.Lars-Dominik Braun2021-09-04
| | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-jellyfish)[version]: Update to 0.8.8. [arguments]: Use pytest. [properties]: Remove python2-variant. (python2-jellyfish): Remove, unsupported by upstream.
| * gnu: python-munkres: Update to 1.1.4.Lars-Dominik Braun2021-09-04
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-munkres) [version]: Update to 1.1.4. [arguments]: Re-enable test suite. [native-inputs]: Add pytest.
| * gnu: python-confuse: Update to 1.5.0.Lars-Dominik Braun2021-09-04
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-confuse)[version]: Update to 1.5.0. [propagated-inputs]: Remove python-pathlib. [synopsis]: Remove trailing dot.
| * gnu: Remove python2-selectors2.Pierre Langlois2021-09-02
| | | | | | | | * gnu/packages/python-xyz.scm (python2-selectors2): Remove variable.
| * gnu: Remove python2-rfc6555.Pierre Langlois2021-09-02
| | | | | | | | | | * gnu/packages/python-xyz.scm (python2-rfc6555): Remove variable. (python-rfc6555)[properties]: Remove field.
| * gnu: Add date2name.phodina2021-09-01
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (date2name): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: python-anyio: Avoid failing tests.Ricardo Wurmus2021-08-31
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-anyio)[arguments]: Disable asyncio plugin, and explicitly disable network tests.
| * gnu: Remove python-pytest-mock-3.Ricardo Wurmus2021-08-31
| | | | | | | | | | | | * gnu/packages/check.scm (python-pytest-mock-3): Remove variable. * gnu/packages/python-xyz.scm (python-anyio)[native-inputs]: Replace python-pytest-mock-3 with python-pytest-mock.
| * gnu: python-anndata: Fetch sources from git.Ricardo Wurmus2021-08-30
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-anndata)[source]: Fetch from git to include test data. [arguments]: Enable tests. Do not let setuptools_scm guess the version.
| * gnu: Add python-anyio.Ricardo Wurmus2021-08-30
| | | | | | | | * gnu/packages/python-xyz.scm (python-anyio): New variable.
| * gnu: Add python-svgutils.Ricardo Wurmus2021-08-30
| | | | | | | | * gnu/packages/python-xyz.scm (python-svgutils): New variable.
| * gnu: python-py-next: Update to 1.10.0.Maxim Cournoyer2021-08-29
| | | | | | | | * gnu/packages/python-xyz.scm (python-py-next): Update to 1.10.0.
| * gnu: python-rope: Update to 0.19.0 and remove python2-rope.Maxim Cournoyer2021-08-29
| | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-rope): Update to 0.19.0. [source]: Fix indentation. [arguments]: Remove. [native-inputs]: Remove. [license]: Correct license. (python2-rope): Delete variable.
| * gnu: python-execnet: Update to 1.9.0 and enable tests.Maxim Cournoyer2021-08-29
| | | | | | | | | | | | | | | | * gnu/packages/patches/python-execnet-read-only-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/python-xyz.scm (python-execnet): Update to 1.9.0. [source]: Fix indentation. [arguments]: Enable tests, replacing the default check phase.
| * gnu: Add python-pyspnego.Maxim Cournoyer2021-08-29
| | | | | | | | * gnu/packages/python-xyz.scm (python-pyspnego): New variable.
| * gnu: Add python-ncclient.Maxim Cournoyer2021-08-29
| | | | | | | | * gnu/packages/python-xyz.scm (python-ncclient): New variable.
| * gnu: Add python-resolvelib-0.5.Maxim Cournoyer2021-08-29
| | | | | | | | * gnu/packages/python-xyz.scm (python-resolvelib-0.5): New variable.
| * gnu: Add python-resolvelib.Maxim Cournoyer2021-08-29
| | | | | | | | * gnu/packages/python-xyz.scm (python-resolvelib): New variable.
| * gnu: Add python-commentjson.Maxim Cournoyer2021-08-29
| | | | | | | | * gnu/packages/python-xyz.scm (python-commentjson): New variable.
| * gnu: python-greenlet: Update to 1.1.1.jgart2021-08-27
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-greenlet): Update to 1.1.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: Add python-pyan3.Arun Isaac2021-08-18
| | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-pyan3): New variable. * gnu/packages/patches/python-pyan3-fix-absolute-path-bug.patch, gnu/packages/patches/python-pyan3-fix-positional-arguments.patch: New files. * gnu/local.mk: Register them.
| * Update copyright/name notices for Christine Lemmer-Webber.Christopher Lemmer Webber2021-08-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * doc/guix-cookbook.texi: Update copyright/name for Christine Lemmer-Webber. * gnu/build/image.scm: Likewise. * gnu/build/vm.scm: Likewise. * gnu/packages/admin.scm: Likewise. * gnu/packages/assembly.scm: Likewise. * gnu/packages/audio.scm: Likewise. * gnu/packages/backup.scm: Likewise. * gnu/packages/check.scm: Likewise. * gnu/packages/databases.scm: Likewise. * gnu/packages/emacs-xyz.scm: Likewise. * gnu/packages/finance.scm: Likewise. * gnu/packages/gnupg.scm: Likewise. * gnu/packages/guile-xyz.scm: Likewise. * gnu/packages/guile.scm: Likewise. * gnu/packages/haskell-xyz.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/mail.scm: Likewise. * gnu/packages/password-utils.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/python-web.scm: Likewise. * gnu/packages/python-xyz.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/sphinx.scm: Likewise. * gnu/packages/ssh.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/services/networking.scm: Likewise. * gnu/system/vm.scm: Likewise.
* | gnu: Use the non-deprecated TeX packages.Ludovic Courtès2021-09-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This commit leaves 'dblatex' and 'texlive-hyperref' as users of deprecated packages, but these have many dependents. * gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Use non-deprecated TeX Live packages. (velvet)[native-inputs]: Likewise. * gnu/packages/chez.scm (chez-scheme)[native-inputs]: Likewise. (chez-web)[native-inputs]: Likewise. * gnu/packages/engineering.scm (fastcap)[native-inputs]: Likewise. * gnu/packages/guile-xyz.scm (emacsy)[native-inputs]: Likewise. * gnu/packages/maths.scm (hypre)[native-inputs]: Likewise. * gnu/packages/music.scm (lilypond)[native-inputs]: Likewise. * gnu/packages/ocaml.scm (ocaml-bibtex2html)[native-inputs]: Likewise. * gnu/packages/plotutils.scm (asymptote)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Likewise. (python-matplotlib-documentation)[native-inputs]: Likewise. (python-ipython-documentation)[native-inputs]: Likewise. (python-nbconvert)[native-inputs]: Likewise. (python-pypandoc)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Likewise. * gnu/packages/tex.scm (texlive-pstool)[propagated-inputs]: Likewise. (teximpatient)[native-inputs]: Likewise. (texlive-latex-pgf)[propagated-inputs]: Likewise. (texlive-beamer)[propagated-inputs]: Likewise.
* | gnu: python-gast: Update to 0.5.2.Felix Gruber2021-09-05
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-gast): Update to 0.5.2. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* | gnu: python-bsddb3: Update to 6.2.9.Guillaume Le Vaillant2021-08-30
| | | | | | | | * gnu/packages/python-xyz.scm (python-bsddb3): Update to 6.2.9.
* | gnu: python-chai: Remove Python2 code.Guillaume Le Vaillant2021-08-28
| | | | | | | | | | | | * gnu/packages/patches/python-chai-drop-python2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-chai)[source]: Use it.
* | gnu: python2-chai: Remove package.Guillaume Le Vaillant2021-08-28
| | | | | | | | | | | | Nothing depends on it. * gnu/packages/python-xyz.scm (python2-chai): Remove variable.
* | gnu: python-owslib: Fix build.Guillaume Le Vaillant2021-08-28
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-owslib)[arguments]: Disable 'sanity-check' phase until dependencies for tests are packaged.
* | gnu: python2-pillow: Disable tests.Guillaume Le Vaillant2021-08-23
| | | | | | | | * gnu/packages/python-xyz.scm (python2-pillow)[arguments]: Disable tests.
* | gnu: python2-gamera: Disable wxpython support.Guillaume Le Vaillant2021-08-23
| | | | | | | | | | | | | | | | | | The package doesn't build when wxpython support is activated, and the only dependent (didjvu) doesn't need it. * gnu/packages/python-xyz.scm (python2-gamera)[inputs]: Remove python2-wxpython. [arguments]: Add 'disable-wx-support' phase.
* | gnu: python-jupyter-core: Use GUIX_PYTHONPATH.Efraim Flashner2021-08-22
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-jupyter-core)[arguments]: Adjust custom 'patch-testsuite phase to use GUIX_PYTHONPATH as the PYTHONPATH.
* | gnu: python-jsonschema: Update inputs.Efraim Flashner2021-08-22
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-jsonschema)[propagated-inputs]: Remove python-importlib-metadata. (python2-jsonschema)[propagated-inputs]: Add python2-importlib-metadata.
* | gnu: python-jsonschema: Fix test suite.Efraim Flashner2021-08-22
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-jsonschema)[arguments]: Adjust custom 'check phase to honor #:tests and to set the JSON_SCHEMA_TEST_SUTE environment variable.
* | gnu: python-matplotlib: Update to 3.4.3.Mathieu Othacehe2021-08-16
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.4.3. [source]: Remove patch that is applied upstream. [propagated-inputs]: Add python-certifi. [inputs]: Add qhull. [native-inputs]: Add python-wheel. [arguments]: Extend regexp to match more image comparison tests. Wrap long lines. Use system freetype and qhull libraries.
* | gnu: bpython: Update to 0.21.Mathieu Othacehe2021-08-16
| | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (bpython): Update to 0.21. [propagated-inputs]: Use python-cwcwidth instead of python-wcwidth. Add python-pyxdg. [native-inputs]: Add python-tox and python-wheel.
* | gnu: Add python-cwcwidth.Mathieu Othacehe2021-08-16
| | | | | | | | * gnu/packages/python-xyz.scm (python-cwcwidth): New variable.
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