| Commit message (Collapse) | Author | Age |
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* gnu/packages/python-science.scm (python-vedo): Update to 2022.2.0.
[arguments]: Add 'fix-tests' phase.
[inputs]: Move fenics and python-matplotlib to propagated-inputs.
Move python-pkgconfig from here...
[native-inputs]: ...to here.
[propagated-inputs]: Add python-deprecated (and fenics and
python-matplotlib).
[description]: Make description more accurate.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-vedo)[arguments]: Disable
sanity check.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-vedo)[inputs]: Remove labels
and sort the inputs.
[propagated-inputs]: Remove labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-vedo)[arguments]: Adjust
custom 'check' phase to honor the #:tests? flag. Also remove its
trailing boolean.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-traittypes): New variable.
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* gnu/packages/python-science.scm (python-trimesh): New variable.
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
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* gnu/packages/python-science.scm (python-numpy-groupies): New variable.
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* gnu/packages/python-science.scm (python-scikit-allel): New variable.
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* gnu/packages/python-science.scm (python-scipy)[arguments]: Replace
'check with custom 'check phase.
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* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.2.
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* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.1.
[propagated-inputs]: Add PYTHON-PYTHRAN.
[native-inputs]: Remove PYTHON-CODECOV, PYTHON-FLAKE8, PYTHON-PYTEST-COV, and
PYTHON-WHEEL.
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* gnu/packages/python-science.scm (python-pythran): New variable.
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* gnu/packages/python-science.scm (python-upsetplot): Update to 0.6.0.
[source](modules, snippet): New fields.
[arguments]: Remove obsolete phase. Respect TESTS? in check phase.
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* gnu/packages/python-science.scm (python-pandas-0.25): Remove variable.
(python2-pandas): Inherit from PYTHON-PANDAS.
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With resolved conflicts in:
gnu/packages/gnome.scm
gnu/packages/openstack.scm
gnu/packages/python-xyz.scm
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5.
[phases]{check}: Add a reference to the network accessing tests issue, now
reported upstream. Reinstate the excelwriter tests.
[propagated-inputs]: Add python-xlsxwriter.
[native-inputs]: Remove python-nose.
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* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]: Add
#:tests?. Remove #:phases.
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* gnu/packages/python-science.scm (python-modin)[arguments]: Add phase.
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* gnu/packages/python-science.scm (python-scipy): Update to 1.7.3.
[native-inputs]: Add python-pydata-sphinx-theme, python-sphinx-panels.
[arguments]: Add phase to build without python-pythran. Remove
trailing #t from phases.
* gnu/packages/sphinx.scm (python-pydata-sphinx-theme)[native-inputs]:
Remove python-plotly.
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* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
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This reverts commit f2ad33bc3933b710e5beb6592a9a4925b91b199a.
python-pingouin after 0.3.12 needs newer versions of all the python
science libraries.
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The package was never compatible with Python 3. Not adding a deprecated
package variant, because going from Python 3 to Python 2 is a breaking
change and it’s unlikely anyone ever used the package anyway (it was
likely broken).
* gnu/packages/python-science.scm (python-pyflow): Move…
(python2-pyflow): …here.
[arguments]: Use Python 2.
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* gnu/packages/python-science.scm (python-distributed): Update to 2021.11.2.
[source](snippet): New field.
[arguments]: Add versioneer phase.
[native-inputs]: Add PYTHON-VERSIONEER.
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This commit was obtained by running:
./pre-inst-env guix style
without any additional argument.
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* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override;
replace gfortran with gfortran-7; add gcc-7.
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* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
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* gnu/packages/python-science.scm (python-scipy)[arguments]: Respect TESTS? in
'CHECK phase.
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4.
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* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom
'check phase adjust to not fail tests with missing test data.
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* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
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* gnu/packages/python-science.scm (python-distributed): Update to
2021.09.1.
[arguments]: Disable failing test test_text.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python2-pandas)[arguments]: Do not inherit
field; revert to values at commit c0d43f62232507b441edf28c3f051921dfb04c2a.
[propagated-inputs]: Do not inherit.
[inputs]: Same.
[native-inputs]: Same.
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* gnu/packages/python-science.scm (python-modin): New variable.
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* gnu/packages/python-science.scm (python-distributed): New variable.
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0.
[arguments]: Adjust check phase.
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* gnu/packages/python-science.scm (python-pingouin): New variable.
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* gnu/packages/python-science.scm (python-pandas-flavor): New variable.
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The dependency on lapack was unused; the LAPACK interface of OpenBLAS is
used instead. The dependency on lapack was added in
cba256f8faaa18457fc9b77e8b401f17b89bdd75 (numpy) and
719b01c1575b8599b0dca9f245a9d759032f3168 (scipy).
* gnu/packages/python-science.scm (python-scipy)[inputs]: Remove
LAPACK.
* gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise.
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* gnu/packages/python-science.scm (python-ruffus): New variable.
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* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to...
[native-inputs]: ...here.
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* gnu/packages/python-science.scm (python-vedo): New variable.
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* gnu/packages/python-science.scm (python-pyflow): New variable.
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* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add phases
related to tests.
[native-inputs]: Add python-codecov, python-flake8, python-pytest,
python-pytest-cov, python-pytest-localserver, python-wheel.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/python-science.scm (python-scikit-image): Update to 0.18.1.
[propagated-inputs]: Remove python-six.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/python-science.scm (python-upsetplot): New variable.
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* gnu/packages/python-science.scm (python-statannot): New variable.
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* gnu/packages/python-xyz.scm (python-scipy): Update to 1.6.0.
[inputs]: Add pybind11.
[arguments]<#:phases>['change-home-dir]: New phase.
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
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* gnu/packages/python-science.scm (python-baycomp): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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