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* gnu: hdf5: Remove use of deprecated MPI1 symbols.Eric Bavier2019-02-07
| | | | | | | * gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch, gnu/packages/patches/hdf5-mpi-deprecations.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
* gnu: superlu-dist: Remove use of deprecated MPI1 symbols.Eric Bavier2019-02-07
| | | | | | * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (superlu-dist)[source]: Use it.
* gnu: musescore: Update to 3.0.2.Nicolas Goaziou2019-02-05
| | | | | | | * gnu/packages/music.scm (musescore): Update to 3.0.2. [source]: Add patch. * gnu/packages/patches/musescore-fix-use_webengine.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference patch.
* gnu: nyx: Update to 2.1.0.Tobias Geerinckx-Rice2019-02-05
| | | | | | | | * gnu/packages/tor.scm (nyx): Update to 2.1.0. [source]: Remove patch. * gnu/packages/patches/nyx-show-header-stats-with-python3.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'mcron-install.patch'.Leo Famulari2019-02-05
| | | | | | | This is a followup to commit cfbf6de18cc70d2e385feb5f61f9363f18e78ddf. * gnu/packages/patches/mcron-install.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'ocaml-graph-honor-source-date-epoch.patch'.Leo Famulari2019-02-05
| | | | | | | This is a followup to commit 564cf93f2aca60171b4b97559ffc6c952e73e8ed. * gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'ocaml-findlib-make-install.patch'.Leo Famulari2019-02-05
| | | | | | | This is a followup to commit bff6739d5ea513417bb491a61aa276c4fb7ddd43. * gnu/packages/patches/ocaml-findlib-make-install.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'python2-rdflib-drop-sparqlwrapper.patch'.Leo Famulari2019-02-05
| | | | | * gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'openldap-CVE-2017-9287.patch'.Leo Famulari2019-02-05
| | | | | | | This is a followup to commit 47415332d70cd9166b0914ce43018ae57083c120. * gnu/packages/patches/openldap-CVE-2017-9287.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'glibc-memchr-overflow-i686.patch'.Leo Famulari2019-02-05
| | | | | | | This is a followup to commit 67d527e35e367c9e9e89ec01cda2ce32cabd2d89. * gnu/packages/patches/glibc-memchr-overflow-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'net-tools-bitrot.patch'.Leo Famulari2019-02-05
| | | | | | | This is a followup to commit b5f610620b65eabd671a5f68d6e6155194101efa. * gnu/packages/patches/net-tools-bitrot.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'xboing-CVE-2004-0149.patch'.Leo Famulari2019-02-04
| | | | | | | This is a followup to commit 740a335558a440245a2374fae9ffaa3427aa546c. * gnu/packages/patches/xboing-CVE-2004-0149.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'ao-cad-aarch64-support.patch'.Leo Famulari2019-02-04
| | | | | | | This is a followup to commit 28f4d56dd311a3b4c7102394120de05be6937494. * gnu/packages/patches/ao-cad-aarch64-support.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unused patch 'blender-newer-ffmpeg.patch'.Leo Famulari2019-02-04
| | | | | | | This is a followup to commit fc51c28ae8172c9f4370772bd76601f89b9498e6. * gnu/packages/patches/blender-newer-ffmpeg.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Removed unused patch 'readline-7.0-mingw.patch'.Leo Famulari2019-02-04
| | | | | | | | | | This patch was introduced in commit ae12d586275cdd96db23fb01bf840b2055b5b979, but it was never used. See <https://bugs.gnu.org/26581> for more information. * gnu/packages/patches/readline-7.0-mingw.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: u-boot: Update to 2019.01.Vagrant Cascadian2019-02-04
| | | | | | | | | | | | | * gnu/packages/bootloaders.scm (u-boot): Update to 2019.01. (u-boot-tools): Disable CONFIG_SOUND in sandbox configs. (u-boot-pinebook)[source]: Remove patches. * gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch, gnu/packages/patches/u-boot-pinebook-dts.patch, gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch, gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch, gnu/packages/patches/u-boot-pinebook-syscon-node.patch, gnu/packages/patches/u-boot-pinebook-video-bridge.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
* gnu: p11-kit: Update to 0.23.15.Marius Bakke2019-01-31
| | | | | | | * gnu/packages/patches/p11-kit-jks-timestamps.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/tls.scm (p11-kit): Update to 0.23.15. [source](patches): New field.
* gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778.Leo Famulari2019-01-31
| | | | | | | * gnu/packages/patches/qemu-CVE-2018-16872.patch, gnu/packages/patches/qemu-CVE-2019-6778.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them.
* gnu: icecat: Update to 60.5.0-guix1 [security-fixes].Mark H Weaver2019-01-29
| | | | | | | | | | | Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505. * gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1. [version]: Use %icecat-version. [source]: Inherit from 'icecat-source'. Remove obsolete patches. * gnu/packages/patches/icecat-avoid-bundled-libraries.patch, gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch, gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0.
* gnu: icecat: Add icecat-source.Mark H Weaver2019-01-29
| | | | | | | * gnu/packages/gnuzilla.scm (computed-origin-method): New variable. (%icecat-version, icecat-source): New variables. * gnu/packages/patches/icecat-makeicecat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: x265: Update to 3.0.Efraim Flashner2019-01-29
| | | | | | | * gnu/packages/video.scm (x265): Update to 3.0. [source]: Remove patch. * gnu/packages/patches/x265-detect512-all-arches.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: linkchecker: Fix most test failures.Christopher Baines2019-01-25
| | | | | | | | | | | | | | | | Add a patch to skip more tests that require the network. Along with some other changes, this gets all but of one of the tests passing. The remaining test is broken due to a problem with the Python package in Guix, which is fixed by [1] which is currently on the core-updates branch. This patch doesn't work on core-updates due to python2-miniboa not being present. 1: d453b0e11d3f001a8160a7d126fdbf40e45d5042 * gnu/packages/python.scm (linkchecker)[source]: Add patch. [native-inputs]: Add more inputs required for the tests. [arguments]: Enable the tests, move the 'check phase after 'install. Test using the installed software, and use py.test.
* superlu-dist: Upgrade to 6.1.0.Eric Bavier2019-01-25
| | | | | | | | | | | | | | | * gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch.
* scotch: Upgrade to 6.0.6.Eric Bavier2019-01-25
| | | | | | | | | | | | | * gnu/packages/maths.scm (scotch): Upgrade to 6.0.6. [source]: Remove patches that have been fixed upstream. [arguments]: Add 'install-metis' phase. [outputs]: New field. (pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'. * gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch, gnu/packages/patches/scotch-test-threading.patch: Delete files. * gnu/packages/patches/scotch-integer-declarations.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
* gnu: Add Combinatorial BLAS.Eric Bavier2019-01-25
| | | | | | | * gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them.
* gnu: gnucash: Disable the stress-options-test using a phase.Maxim Cournoyer2019-01-23
| | | | | | | | | | | The qof test is also reinstated; it was failing because the needed locales were not installed. * gnu/packages/patches/gnucash-disable-failing-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/gnucash.scm (gnucash)[patches]: Remove it. [phases]{disable-stress-options-test}: Implement it using SUBSTITUTES*. {install-locales}: New phase.
* gnu: gnucash: Convert price-quotes-perl patch to a phase.Maxim Cournoyer2019-01-23
| | | | | | | * gnu/packages/patches/gnucash-price-quotes-perl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/gnucash.scm (gnucash)[patches]: Remove it. [phases]{fix-finance-quote-check}: Implement it using SUBSTITUTES*.
* gnu: OpenSSH: Fix CVE-2018-20685.Leo Famulari2019-01-17
| | | | | | * gnu/packages/patches/openssh-CVE-2018-20685.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it.
* gnu: kmscon: Add runtime keymap update support.Mathieu Othacehe2019-01-17
| | | | | | * gnu/packages/patches/kmscon-runtime-keymap-switch.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/terminals.scm (kmscon)[source]: Add patch.
* gnu: kodi: Skip failing test.Efraim Flashner2019-01-16
| | | | | | * gnu/packages/kodi.scm (kodi)[source]: Add patch. * gnu/packages/patches/kodi-skip-test-449.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: libssh: Update to 0.8.6.Ludovic Courtès2019-01-14
| | | | | | | | | * gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.8.6. [source](patches): Remove. [arguments]: Add #:phases. (guile-ssh)[source](modules, snippet]: New fields.
* gnu: opencv: Loosen test suite failures.Efraim Flashner2019-01-14
| | | | | | | | * gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch to opencv-contrib. [arguments]: Update 'unpack-submodule-sources phase. * gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.Hartmut Goebel2019-01-11
| | | | | | | | | | | Using LIBRARY_PATH was introduced in 16b8aff85bcdb9799496c4a27257210cd45158e5, but is wrong since this variable is used by the compiler (gcc) at link time. * gnu/packages/patches/kinit-kdeinit-libpath.patch: Change LIBRARY_PATH to KDEINIT5_LIBRARY_PATH. * gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]: New field.
* gnu: Add docker.Danny Milosavljevic2019-01-10
| | | | | | | * gnu/packages/docker.scm (docker): New variable. * gnu/packages/patches/docker-engine-test-noinstall.patch: New file. * gnu/packages/patches/docker-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them.
* gnu: aria2: Fix CVE-2019-3500.Leo Famulari2019-01-09
| | | | | | * gnu/packages/patches/aria2-CVE-2019-3500.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bittorrent.scm (aria2)[source]: Use it.
* gnu: biber: Update to 2.12.Jelle Licht2019-01-07
| | | | | | | | * gnu/packages/tex.scm (biber): Update to 2.12. [source]: Use 'git-fetch'. Add patch. [inputs]: Add perl-file-slurper. Remove perl-file-slurp. * gnu/packages/patches/biber-fix-encoding-write.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: libarchive: Replace with libarchive 3.3.3 and fix ↵Alex Vong2019-01-07
| | | | | | | | | | | | CVE-2018-{1000877,1000878,1000880}. * gnu/packages/backup.scm (libarchive)[source, home-page]: Use HTTPS. [replacement]: New field. (libarchive-3.3.3): New variable. * gnu/packages/patches/libarchive-CVE-2018-1000877.patch, gnu/packages/patches/libarchive-CVE-2018-1000878.patch, gnu/packages/patches/libarchive-CVE-2018-1000880.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
* gnu: unrtf: Update to 0.21.10.Efraim Flashner2019-01-06
| | | | | | | | * gnu/packages/unrtf.scm (unrtf): Update to 0.21.10. [source]: Remove patch, remove snippet. [license]: Update to gpl3+. * gnu/packages/patches/unrtf-CVE-2016-10091.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: streamlink: Fix build.Efraim Flashner2019-01-05
| | | | | | * gnu/packages/video.scm (streamlink)[source]: Add patch. * gnu/packages/patches/streamlink-update-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: kpackage: Transfer patches from NixOS.Hartmut Goebel2019-01-04
| | | | | | | | | | | | | | Transfer the NixOS patches for kpackage as of 2018-02-17: - Allow external paths. - Make QDirIterator follow symlinks. Decided to use a patch for one of the "allow external paths" changes since 'substitute*' seems not to be robust enough. * gnu/packages/patches/kpackage-allow-external-paths.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm(kpackage)[source]: Use it. <patch>: New phase.
* gnu: kinit: Use LIBRARY_PATH to search for dynamically loaded libs.Hartmut Goebel2019-01-04
| | | | | | | | | Transfer the NixOS "kdeinit-libpath" patch for kinit as of 2018-02-17. * gnu/packages/patches/kinit-kdeinit-libpath.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm (kinit)[source]: Use it.
* gnu: kinit: Use the store paths for dynamically loaded libs.Hartmut Goebel2019-01-04
| | | | | | | | | | | Transfer the NixOS "kdeinit-extra_libs" patch for kinit as of 2018-02-17. * gnu/packages/patches/kinit-kdeinit-extra_libs.patch: New filee. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm (kinit)[source]: Use it. <patch-paths>: New phase. [inputs]: Add kparts, plasma-framework.
* gnu: kio: Search 'smbd' on $PATH.Hartmut Goebel2019-01-04
| | | | | | | | Transfer the remaining NixOS patch for kio as of 2018-02-17. * gnu/packages/patches/kio-search-smbd-on-PATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm(kio)<source>: Use it.
* gnu: libextractor: Fix CVE-2018-{20430,20431}.Alex Vong2019-01-04
| | | | | | | * gnu/packages/patches/libextractor-CVE-2018-20430.patch, gnu/packages/patches/libextractor-CVE-2018-20431.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gnunet.scm (libextractor)[source]: Use them.
* gnu: vboot-utils: Fix building on armhf-linux.Kei Kebreau2019-01-03
| | | | | | | | | * gnu/packages/bootloaders.scm (vboot-utils)[source]: Add patches. [arguments]: Conditionally add "HOST_ARCH=arm" to #:make-flags. * gnu/packages/patches/vboot-utils-fix-format-load-address.patch, gnu/packages/patches/vboot-utils-fix-tests-show-contents.patch, gnu/packages/patches/vboot-utils-skip-test-workbuf.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
* gnu: gnucash: Fix test failure.Maxim Cournoyer2019-01-02
| | | | | | | | Fixes issue #32057 (see: https://issues.guix.info/issue/32057). * gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnucash.scm (gnucash): Use it.
* gnu: owncloud-client: Update to 2.5.1.10973.Efraim Flashner2019-01-02
| | | | | * gnu/packages/sync.scm (owncloud-client): Update to 2.5.1.10973. * gnu/packages/patches/owncloud-disable-updatecheck.patch: Update patch.
* gnu: vinagre: Update package for newer freerdp.Efraim Flashner2018-12-30
| | | | | | | | | | | * gnu/packages/gnome.scm (vinagre)[source]: Update patches. [arguments]: Add custom phase to replace 'freerdp' with 'freerdp2'. Remove configure flags. * gnu/packages/patches/vinagre-revert-1.patch, gnu/packages/patches/vinagre-revert-2.patch: Remove files. * gnu/packages/patches/vinagre-newer-freerdp.patch, gnu/packages/patches/vinagre-newer-rdp-parameters.patch: New files. * gnu/local.mk (dist_patch_DATA): Register changes.
* gnu: file: Fix CVE-2018-10360.Efraim Flashner2018-12-24
| | | | | | | | | * gnu/packages/patches/file-CVE-2018-10360.patch: New file. * gnu/packages/file.scm (file)[replacement]: New field. (file/fixed): New variable. * gnu/packages/commencement.scm (file-boot0): Use 'package/inherit' to receive security fixes. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: datamash: Update to 1.4.Efraim Flashner2018-12-23
| | | | | | | * gnu/packages/datamash.scm (datamash): Update to 1.4. [source]: Remove patch. * gnu/packages/patches/datamash-arm-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.