guix-patches - Patches for guix

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\| *	gnu: Remove "open source" from descriptions.	Ricardo Wurmus	2017-11-08
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	All software in Guix is Free Software. * gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string. * gnu/packages/firmware.scm (seabios)[description]: Likewise. * gnu/packages/libupnp.scm (libupnp)[description]: Likewise. * gnu/packages/maths.scm (cubicle)[description]: Likewise. * gnu/packages/mingw.scm (mingw-w64)[description]: Likewise. * gnu/packages/game-development.scm (openmw)[description]: Likewise. [synopsis]: Remove "Free software".
* \|	Merge branch 'master' into core-updates	Marius Bakke	2017-11-02
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\| *	gnu: units: Add readline input.	Eric Bavier	2017-11-01
\| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (units)[inputs]: Add readline.
\| *	gnu: units: Add python input.	Eric Bavier	2017-11-01
\| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (units)[inputs]: New field. [arguments]: New field. Add 'wrap-units_cur phase.
\| *	gnu: units: Update to 2.16.	Eric Bavier	2017-11-01
\| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (units): Update to 2.16.
* \|	Merge branch 'master' into core-updates	Tobias Geerinckx-Rice	2017-10-25
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\| *	gnu: dealii: Update to 8.5.1.	Eric Bavier	2017-10-24
\| \| \| \| \| \| \| \| \| \| \| \|	Fixes compilation with boost@1.64.0. * gnu/packages/maths.scm (dealii): Update to 8.5.1.
\| *	gnu: p4est: Update to 2.0.	Eric Bavier	2017-10-24
\| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (p4est): Update to 2.0.
\| *	gnu: libhilbert: Remove package.	Eric Bavier	2017-10-24
\| \| \| \| \| \| \| \| \| \| \| \| \| \|	This package's source and webpage has disappeared for some time, and upstream projects (e.g. libmesh) seem to be bundling it, so we remove it for now. * gnu/packages/maths.scm (libhilbert): Remove variable.
\| *	gnu: slepc: Update to 3.8.0.	Eric Bavier	2017-10-24
\| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (slepc): Update to 3.8.0.
\| *	gnu: petsc: Update to 3.8.0.	Eric Bavier	2017-10-24
\| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (petsc): Update to 3.8.0 [native-inputs]: Remove perl, which is no longer needed.
* \|	Merge 'master' into core-updates	Thomas Danckaert	2017-10-16
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\| *	gnu: maxima: Update to 5.41.0.	Kei Kebreau	2017-10-15
\| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (maxima): Update to 5.41.0.
\| *	gnu: Add lapack-3.5.	Theodoros Foradis	2017-10-11
\| \| \| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (lapack-3.5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* \|	Merge branch 'master' into core-updates	Marius Bakke	2017-10-10
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\| *	Merge branch 'staging'	Marius Bakke	2017-10-10
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\| \| *	Merge branch 'master' into staging	Marius Bakke	2017-10-06
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\| \| * \	Merge branch 'master' into staging	Marius Bakke	2017-10-05
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\| \| * \| \|	gnu: Use 'modify-phases' syntax.	Kei Kebreau	2017-09-20
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	* gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal, wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use 'modify-phases' syntax. * gnu/packages/algebra.scm (arb)[arguments]: Likewise. * gnu/packages/apr.scm (apr-util)[arguments]: Likewise. * gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano, lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound, zita-convolver, zita-alsa-pcmi)[arguments]: Likewise. * gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express, flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise. * gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise. * gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise. * gnu/packages/compression.scm (sharutils)[arguments]: Likewise. * gnu/packages/conky.scm (conky)[arguments]: Likewise. * gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise. * gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise. * gnu/packages/display-managers.scm (slim)[arguments]: Likewise. * gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise. * gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise. * gnu/packages/engineering.scm (pcb)[arguments]: Likewise. * gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise. * gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise. * gnu/packages/fltk.scm (fltk)[arguments]: Likewise. * gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise. * gnu/packages/gd.scm (perl-gd)[arguments]: Likewise. * gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise. * gnu/packages/glib.scm (glibmm)[arguments]: Likewise. * gnu/packages/gl.scm (glew)[arguments]: Likewise. * gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs, libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise. * gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise. * gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise. * gnu/packages/graphics.scm (agg)[arguments]: Likewise. * gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present, python2-pycairo)[arguments]: Likewise. * gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise. * gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise. * gnu/packages/hugs.scm (hugs)[arguments]: Likewise. * gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal) [arguments]: Likewise. * gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise. * gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static, lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools) [arguments]: Likewise. * gnu/packages/lisp.scm (ccl)[arguments]: Likewise. * gnu/packages/lout.scm (lout)[arguments]: Likewise. * gnu/packages/lua.scm (luajit)[arguments]: Likewise. * gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise. * gnu/packages/mail.scm (exim)[arguments]: Likewise. * gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise. * gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun) [arguments]: Likewise. * gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise. * gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise. * gnu/packages/music.scm (solfege)[arguments]: Likewise. * gnu/packages/noweb.scm (noweb)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]: Likewise. * gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu, zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise. * gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]: Likewise. * gnu/packages/photo.scm (gphoto2)[arguments]: Likewise. * gnu/packages/popt.scm (popt)[arguments]: Likewise. * gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]: Likewise. * gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise. * gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy, python-sqlalchemy, python-docopt)[arguments]: Likewise. * gnu/packages/rdf.scm (lrdf)[arguments]: Likewise. * gnu/packages/regex.scm (tre)[arguments]: Likewise. * gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise. * gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise. * gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise. * gnu/packages/scheme.scm (racket)[arguments]: Likewise. * gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise. * gnu/packages/serveez.scm (serveez)[arguments]: Likewise. * gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise. * gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise. * gnu/packages/tcl.scm (expect)[arguments]: Likewise. * gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise. * gnu/packages/textutils.scm (recode, libgtextutils)[arguments]: Likewise. * gnu/packages/time.scm (time)[arguments]: Likewise. * gnu/packages/tor.scm (privoxy)[arguments]: Likewise. * gnu/packages/uucp.scm (uucp)[arguments]: Likewise. * gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise. * gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise. * gnu/packages/web.scm (tinyproxy)[arguments]: Likewise. * gnu/packages/wicd.scm (wicd)[arguments]: Likewise. * gnu/packages/wm.scm (bspwm)[arguments]: Likewise. * gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise. * gnu/packages/xfce.scm (xfconf)[arguments]: Likewise. * gnu/packages/xfig.scm (transfig)[arguments]: Likewise. * gnu/packages/xorg.scm (imake)[arguments]: Likewise.
\| * \| \| \|	gnu: Add hdf-java.	Thomas Danckaert	2017-10-10
\| \| \|_\|/ \| \|/\| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (hdf-java): New variable.
\| * \| \|	gnu: octave: Reference makeinfo with absolute path.	Arun Isaac	2017-10-06
\| \| \|/ \| \|/\| \| \| \| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (octave)[arguments]: Add configure-makeinfo phase. [inputs]: Add texinfo. [native-inputs]: Remove texinfo.
\| * \|	Update e-mail for Theodoros Foradis.	Theodoros Foradis	2017-10-03
\| \|/ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	* .mailmap: Add entry. * gnu/packages/aspell.scm: Replace theodoros.for@openmailbox.org with current address. * gnu/packages/compression.scm: Likewise. * gnu/packages/electronics.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/fpga.scm: Likewise. * gnu/packages/graphviz.scm: Likewise. * gnu/packages/guile.scm: Likewise. * gnu/packages/libusb.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/messaging.scm: Likewise. * gnu/packages/uml.scm: Likewise. * gnu/packages/wxwidgets.scm: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* \|	Merge remote-tracking branch 'origin/master' into core-updates	Efraim Flashner	2017-10-01
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\| *	gnu: Add BLIS.	Ludovic Courtès	2017-09-07
\| \| \| \| \| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (make-blis): New procedure. (blis, ignorance): New variables. (blis/x86_64): New macro. (blis-sandybridge, blis-haswell, blis-knl): New variables.
\| *	gnu: pt-scotch32: use keyword arguments from "scotch32"	Paul Garlick	2017-09-04
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	*gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword arguments from "scotch32" package, ensuring that the INTSIZE32 macro is set Signed-off-by: Ludovic Courtès <ludo@gnu.org>
\| *	gnu: netcdf: Fix reproducibility issue; remove unneeded references.	Thomas Danckaert	2017-09-01
\| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded 'Configured On' date; truncate reference to compiler store item.
\| *	gnu: hdf4: Avoid unneeded store references to compilers.	Thomas Danckaert	2017-09-01
\| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to truncate hashes of compiler store items.
\| *	gnu: hdf5: Avoid unneeded store references to compilers.	Thomas Danckaert	2017-09-01
\| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch "libhdf5.settings", removing references to the C/C++/Fortran compilers.
\| *	gnu: hdf5: Add output for fortran interface.	Thomas Danckaert	2017-09-01
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran. [outputs]: Add "fortran". [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran output to the runpath of the Fortran libs; add a 'split phase to move all Fortran-related files to the the Fortran output store location.
\| *	gnu: Add pt-scotch32.	Paul Garlick	2017-08-31
\| \| \| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (pt-scotch32): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
\| *	gnu: Add "scotch32".	Paul Garlick	2017-08-31
\| \| \| \| \| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (scotch32): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
\| *	gnu: coda: Update to 2.18.2.	Thomas Danckaert	2017-08-30
\| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (coda): Update to 2.18.2.
\| *	Update e-mail for Kei Kebreau.	Kei Kebreau	2017-08-29
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	* .mailmap: Map kei@openmailbox.org to current address. * gnu/local.mk: Replace kei@openmailbox.org to current address. * gnu/packages/backup.scm: Likewise. * gnu/packages/calendar.scm: Likewise. * gnu/packages/check.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/fltk.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/game-development.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gnustep.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/hexedit.scm: Likewise. * gnu/packages/image.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/xfce.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/tcl.scm: Likewise. * gnu/packages/textutils.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/web.scm: Likewise. * gnu/packages/web-browsers.scm: Likewise. * gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
* \|	gnu: openblas: Enable tests.	Ricardo Wurmus	2017-08-31
\| \| \| \| \| \| \| \|	* gnu/packages/maths.scm (openblas)[arguments]: Enable tests.
* \|	gnu: openblas: Update to 0.2.20.	Ricardo Wurmus	2017-08-31
\|/ \| \| \|	* gnu/packages/maths.scm (openblas): Update to 0.2.20.
*	Merge branch 'core-updates'	Marius Bakke	2017-08-26
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\| *	Merge branch 'master' into core-updates	Marius Bakke	2017-08-21
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\| * \	Merge branch 'master' into core-updates	Mark H Weaver	2017-08-15
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\| * \ \	Merge branch 'master' into core-updates	Mark H Weaver	2017-08-09
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\| * \ \ \	Merge branch 'master' into core-updates	Mark H Weaver	2017-08-07
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\| * \ \ \ \	Merge branch 'master' into core-updates	Mark H Weaver	2017-08-06
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\| * \ \ \ \ \	Merge branch 'master' into core-updates	Marius Bakke	2017-08-01
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\| * \ \ \ \ \ \	Merge branch 'master' into core-updates	Marius Bakke	2017-07-28
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\| * \ \ \ \ \ \ \	Merge branch 'master' into core-updates	Leo Famulari	2017-07-23
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\| * \ \ \ \ \ \ \ \	Merge branch 'master' into core-updates	Leo Famulari	2017-07-10
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\| * \ \ \ \ \ \ \ \ \	Merge branch 'master' into core-updates	Leo Famulari	2017-06-29
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\| * \ \ \ \ \ \ \ \ \ \	Merge branch 'master' into core-updates	Mark H Weaver	2017-06-26
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\| * \ \ \ \ \ \ \ \ \ \ \	Merge branch 'master' into core-updates	Mark H Weaver	2017-06-20
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\| * \ \ \ \ \ \ \ \ \ \ \ \	Merge branch 'master' into core-updates	Leo Famulari	2017-06-07
\| \|\ \ \ \ \ \ \ \ \ \ \ \ \ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	This merge commit includes a fix for CVE-2017-6512 in Perl 5.26.0.
\| * \ \ \ \ \ \ \ \ \ \ \ \ \	Merge branch 'master' into core-updates	Ricardo Wurmus	2017-05-24
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