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* Merge branch 'master' into core-updatesMarius Bakke2018-10-21
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| * gnu: maxima: Update to 5.42.0.Kei Kebreau2018-10-20
| | | | | | | | * gnu/packages/maths.scm (maxima): Update to 5.42.0.
* | Merge branch 'master' into core-updatesMarius Bakke2018-10-17
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| * gnu: Add python-cvxopt.Ricardo Wurmus2018-10-11
| | | | | | | | * gnu/packages/maths.scm (python-cvxopt, python2-cvxopt): New variables.
* | Merge branch 'master' into core-updatesMarius Bakke2018-10-05
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| * gnu: petsc-openmpi: Configure with support for MUMPS solver.Paul Garlick2018-10-04
| | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis, mumps-openmpi, scalapack and pt-scotch. [arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase ahead of 'configure' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
* | Merge branch 'master' into core-updatesMarius Bakke2018-09-26
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| * gnu: octave: Add a search path for CURLOPT_CAPATH.Kei Kebreau2018-09-24
| | | | | | | | * gnu/packages/maths.scm (octave)[native-search-paths]: New field.
| * gnu: hdf5-parallel-openmpi: Really enable parallel build.Paul Garlick2018-09-21
| | | | | | | | | | | | | | | | | | | | | | This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set in the file H5pubconf.h. * gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add the "--enable-parallel" flag to the list of configure flags. Remove the incompatible "--enable-cxx" flag. Add 'mpi-setup' phase. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
| * gnu: hdf5: Allow for absence of utility script.Paul Garlick2018-09-21
| | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split' phase to check for existence of h5fc script. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge branch 'master' into core-updatesMarius Bakke2018-09-20
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| * gnu: Use INVOKE & return #t from Ruby package phases.Tobias Geerinckx-Rice2018-09-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from all phases. * gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate) (ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins) (ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure) (ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard) (ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers) (ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer) (ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery) (ruby-rc4, ruby-concurrent)[arguments]: Likewise.
| * gnu: glm: Update to 0.9.9.2.Marius Bakke2018-09-19
| | | | | | | | * gnu/packages/maths.scm (glm): Update to 0.9.9.2.
| * gnu: arpack-ng: Update to 3.6.3.Marius Bakke2018-09-19
| | | | | | | | * gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
| * gnu: arpack-ng: Don't use unstable tarball.Marius Bakke2018-09-19
| | | | | | | | * gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
| * gnu: Add openblas-ilp64.Eric Brown2018-09-14
| | | | | | | | | | | | * gnu/packages/maths.scm (openblas-ilp64): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* | Merge branch 'master' into core-updatesLeo Famulari2018-09-13
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| * mpi: Factorize openmpi setup build phase.Eric Bavier2018-09-11
| | | | | | | | | | | | | | * gnu/packages/mpi.scm (%openmpi-setup): New variable. * gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi) (superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental) (sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
| * gnu: arpack-ng-openmpi: Fix build.Paul Garlick2018-09-11
| | | | | | | | | | | | | | * gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add 'set-test-environment phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: mcrl2: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-10
| | | | | | | | * gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
* | gnu: double-conversion: Update to 3.1.0.Marius Bakke2018-09-10
| | | | | | | | * gnu/packages/maths.scm (double-conversion): Update to 3.1.0.
* | gnu: double-conversion: Don't use unstable tarball.Marius Bakke2018-09-10
| | | | | | | | * gnu/packages/maths.scm (double-conversion)[source]: Use GIT-FETCH.
* | gnu: OpenBLAS: Update to 0.3.3.Marius Bakke2018-09-09
|/ | | | * gnu/packages/maths.scm (openblas): Update to 0.3.3.
* gnu: OpenBLAS: Update source URI.Marius Bakke2018-09-09
| | | | | * gnu/packages/maths.scm (openblas)[source](uri): Use the more stable SourceForge mirror.
* gnu: glm: Update to 0.9.9.1.Marius Bakke2018-09-09
| | | | * gnu/packages/maths.scm (glm): Update to 0.9.9.1.
* slepc: Upgrade to 3.9.2.Eric Bavier2018-09-05
| | | | * gnu/packages/maths.scm (slepc): Upgrade to 3.9.2.
* petsc: Upgrade to 3.9.3.Eric Bavier2018-09-05
| | | | | * gnu/packages/maths.scm (petsc): Upgrade to 3.9.3. [arguments]: Remove unnecessary configure flags.
* petsc: Move example code to "examples" output.Eric Bavier2018-09-05
| | | | * gnu/packages/maths.scm (petsc)[arguments]: New 'move-examples' phase.
* gnu: Add SUNDIALS.Eric Bavier2018-09-05
| | | | * gnu/packages/maths.scm (sundials, sundials-openmpi): New variables.
* gnu: petsc-openmpi: Configure with support for hdf5 data format.Paul Garlick2018-09-04
| | | | | | | | | * gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hdf5-parallel-openmpi. [arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib' flags. Add 'set-test-environment' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: arpack-ng: Update to 3.6.2.Marius Bakke2018-09-03
| | | | * gnu/packages/maths.scm (arpack-ng): Update to 3.6.2.
* gnu: arpack-ng: Drop redundant phase.Marius Bakke2018-09-03
| | | | * gnu/packages/maths.scm (arpack-ng)[arguments]: Remove.
* gnu: hypre: Update to 2.14.0.Eric Bavier2018-08-31
| | | | * gnu/packages/maths.scm (hypre): Update to 2.14.0
* gnu: r-pracma: Update to 2.1.5.Tobias Geerinckx-Rice2018-08-28
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
* Merge branch 'staging'Marius Bakke2018-08-19
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| * Merge branch 'master' into stagingMarius Bakke2018-08-16
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| * \ Merge branch 'master' into stagingMarius Bakke2018-07-30
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| * | | gnu: openblas: Update to 0.3.2.Marius Bakke2018-07-30
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.2.
| * | | Merge branch 'master' into stagingMarius Bakke2018-07-28
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| * | | | gnu: double-conversion: Update to 3.0.0.Marius Bakke2018-07-22
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (double-conversion): Update to 3.0.0.
| * | | | gnu: double-conversion: Update home page.Marius Bakke2018-07-22
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (double-conversion)[home-page]: Update to redirected.
| * | | | gnu: openblas: Update to 0.3.1.Marius Bakke2018-07-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/openblas-fix-tests-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/maths.scm (openblas): Update to 0.3.1. [arguments, native-inputs]: Don't apply 'openblas-fix-tests-i686.patch'.
* | | | | gnu: gnuplot: Update to 5.2.4.Kei Kebreau2018-08-18
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
* | | | | gnu: cddlib: Update to 0.94i.Kei Kebreau2018-08-18
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (cddlib): Update to 0.94i.
* | | | | gnu: octave: Update to 4.4.1.Kei Kebreau2018-08-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (octave): Update to 4.4.1. (qtoctave)[source]: Remove obsolete patch. * gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* | | | | gnu: armadillo: Update to 9.100.5.Tobias Geerinckx-Rice2018-08-17
| |_|_|/ |/| | | | | | | | | | | * gnu/packages/maths.scm (armadillo): Update to 9.100.5.
* | | | gnu: armadillo: Update to 9.100.4.Tobias Geerinckx-Rice2018-08-16
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (armadillo): Update to 9.100.4.
* | | | gnu: ocaml-gsl: Update to 1.22.0.Kei Kebreau2018-08-15
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (ocaml-gsl): Update to 1.22.0.
* | | | gnu: coda: Update to 2.19.Kei Kebreau2018-08-13
| |_|/ |/| | | | | | | | * gnu/packages/maths.scm (coda): Update to 2.19.
* | | gnu: mcrl2: Build with modular qt.Efraim Flashner2018-07-29
| |/ |/| | | | | * gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
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