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* Merge branch 'master' into core-updatesMarius Bakke2020-03-10
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| * gnu: speedcrunch: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-09
| | | | | | | | * gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
| * gnu: openblas: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-07
| | | | | | | | * gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
| * gnu: wxmaxima: Update to 20.02.4.Kei Kebreau2020-03-06
| | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests.
| * gnu: SuiteSparse: Update to 5.7.1.Felix Gruber2020-03-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
* | gnu: OpenBLAS: Update to 0.3.9.Marius Bakke2020-03-05
| | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.9.
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-04
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| * gnu: z3: Build the Python bindingsJakub Kądziołka2020-02-23
| | | | | | | | | | | | * gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules.
| * gnu: Add vinci.Andreas Enge2020-02-21
| | | | | | | | * gnu/packages/maths.scm (vinci): New variable.
* | gnu: OpenBLAS: Update to 0.3.8.Marius Bakke2020-02-15
| | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.8.
* | Merge branch 'master' into core-updatesMarius Bakke2020-02-14
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| * gnu: octave, octave-cli: Update to 5.2.0.Kei Kebreau2020-02-10
| | | | | | | | | | * gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb.
* | Merge branch 'staging' into core-updatesMarius Bakke2020-02-03
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| * gnu: superlu-dist: Update to 6.2.0.Eric Bavier2020-01-31
| | | | | | | | | | | | | | * gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
| * gnu: superlu: Update upstream url.Eric Bavier2020-01-31
| | | | | | | | * gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
* | Merge branch 'staging' into core-updatesMarius Bakke2020-01-23
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| * gnu: wxmaxima: Update to 20.01.3.Kei Kebreau2020-01-23
| | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL.
* | gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'.Marius Bakke2020-01-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to LIBJPEG-TURBO. * gnu/packages/admin.scm (testdisk)[inputs]: Likewise. * gnu/packages/algebra.scm (giac)[inputs]: Likewise. * gnu/packages/animation.scm (synfig)[inputs]: Likewise. * gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise. * gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise. * gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise. * gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise. * gnu/packages/display-managers.scm (slim)[inputs]: Likewise. * gnu/packages/ebook.scm (fbreader)[inputs]: Likewise. * gnu/packages/emacs.scm (emacs)[inputs]: Likewise. * gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise. * gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise. * gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise. * gnu/packages/freedesktop.scm (weston)[inputs]: Likewise. * gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame, eureka, ioquake3)[inputs]: Likewise. * gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest, fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise. * gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise. * gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise. (ghostscript)[inputs, native-inputs]: Likewise. * gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise. * gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise. * gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise. * gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise. * gnu/packages/graphics.scm (blender, blender-2.79, openimageio, openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise. * gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise. * gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise. * gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise. * gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl, insight-toolkit)[inputs]: Likewise. * gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise. * gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage, vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise. * gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise. * gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11, openjdk12)[inputs]: Likewise. * gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise. * gnu/packages/kodi.scm (kodi)[inputs]: Likewise. * gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise. * gnu/packages/mate.scm (atril, eom)[inputs]: Likewise. * gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise. * gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise. * gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise. * gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin, rawtherapee)[inputs]: Likewise. * gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise. * gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise. * gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise. * gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise. * gnu/packages/scheme.scm (racket)[inputs]: Likewise. * gnu/packages/scribus.scm (scribus)[inputs]: Likewise. * gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise. (guile-sdl)[native-inputs]: Likewise. * gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise. * gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise. * gnu/packages/upnp.scm (readymedia)[inputs]: Likewise. * gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise. * gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise. * gnu/packages/web.scm (netsurf)[inputs]: Likewise. * gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise. * gnu/packages/wine.scm (wine)[inputs]: Likewise. * gnu/packages/wv.scm (wv)[inputs]: Likewise. * gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise. * gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise. * gnu/packages/xfce.scm (tumbler)[inputs]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise. * gnu/packages/xorg.scm (xpra)[inputs]: Likewise.
* | Merge branch 'staging' into core-updatesMarius Bakke2020-01-21
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| * gnu: elemental: Update home page.Tobias Geerinckx-Rice2020-01-19
| | | | | | | | | | * gnu/packages/maths.scm (elemental)[home-page]: Use repository home page.
| * gnu: petsc: Use HTTPS home page.Tobias Geerinckx-Rice2020-01-19
| | | | | | | | * gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
| * gnu: Use HTTPS for www.hdfgroup.org.Tobias Geerinckx-Rice2020-01-17
| | | | | | | | | | * gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise.
| * gnu: netcdf: Use HTTPS home page.Tobias Geerinckx-Rice2020-01-17
| | | | | | | | * gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
| * gnu: scotch: Use HTTPS home page.Tobias Geerinckx-Rice2020-01-17
| | | | | | | | * gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
| * Update email address for Amin Bandali.Amin Bandali2020-01-17
| | | | | | | | | | | | | | | | | | * .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* | Merge branch 'master' into core-updatesMarius Bakke2020-01-15
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| * gnu: python-slepc4py: Update to 3.11.0.Paul Garlick2020-01-14
| | | | | | | | * gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
| * gnu: python-petsc4py: Update to 3.11.0.Paul Garlick2020-01-14
| | | | | | | | * gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
* | Merge branch 'master' into core-updatesMarius Bakke2020-01-11
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| * gnu: hdf5@1.10: Update to 1.10.6.Tobias Geerinckx-Rice2020-01-10
| | | | | | | | * gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
| * gnu: lapack: Update to 3.9.0.Konrad Hinsen2020-01-07
| | | | | | | | | | | | * gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge remote-tracking branch 'master' into core-updates.Mathieu Othacehe2019-12-31
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| * gnu: hdf5@1.10: Update to 1.10.5.Ludovic Courtès2019-12-13
| | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2019-12-12
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| * gnu: Add lrslib.Andreas Enge2019-12-06
| | | | | | | | * gnu/packages/maths.scm (lrslib): New variable.
* | Merge branch 'master' into core-updatesMarius Bakke2019-12-05
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| * Merge branch 'staging'Marius Bakke2019-12-04
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| | * Merge branch 'master' into stagingMarius Bakke2019-11-28
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| | * \ Merge branch 'master' into stagingMarius Bakke2019-11-21
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| | * \ \ Merge branch 'master' into stagingMarius Bakke2019-10-21
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| | * \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-18
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| | * \ \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-13
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| | * | | | | | gnu: OpenBLAS: Update to 0.3.7.Marius Bakke2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.7.
| | * | | | | | gnu: OpenBLAS: Incorporate grafted changes.Marius Bakke2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas)[replacement]: Remove. [arguments]: Add NUM_THREADS in #:make-flags. (openblas/fixed-num-threads): Remove variable.
| * | | | | | | gnu: z3: Update to 4.8.7.Tobias Geerinckx-Rice2019-12-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (z3): Update to 4.8.7.
| * | | | | | | gnu: nauty: Update to 2.6r12.Tobias Geerinckx-Rice2019-12-01
| | |_|_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (nauty): Update to 2.6r12.
| * | | | | | gnu: Remove obsolete import of R build system module.Ricardo Wurmus2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm: Remove import of (guix build-system r).
| * | | | | | gnu: r-subplex: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * | | | | | gnu: r-pracma: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * | | | | | gnu: r-desolve: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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