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* gnu: r-pracma: Update to 2.1.4.Ricardo Wurmus2018-02-13
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
* gnu: hdf5: Build with -fPIC.Ricardo Wurmus2018-02-12
| | | | * gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
* gnu: mcrl2: Fix typo in synopsis.Tobias Geerinckx-Rice2018-02-08
| | | | | * gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo. [description]: Use @dfn.
* gnu: Add mcrl2.Jan Nieuwenhuizen2018-02-08
| | | | * gnu/packages/maths.scm (mcrl2): New variable.
* gnu: slepc: Apply invoke to configure flags.Eric Bavier2018-02-02
| | | | | | | Follow-up to 94a1eb96d32fcce97ee5d9440ecffe22f7555cd5 * gnu/packages/maths.scm (slepc)[arguments]: Use 'apply' since 'flags' is a list of configure arguments.
* gnu: Add Elemental.Eric Bavier2018-02-02
| | | | * gnu/packages/maths.scm (elemental): New variable.
* gnu: slepc: Update to 3.8.2.Tobias Geerinckx-Rice2018-01-29
| | | | * gnu/packages/maths.scm (slepc): Update to 3.8.2.
* gnu: slepc: Update licence.Tobias Geerinckx-Rice2018-01-29
| | | | | | SLEPc has been released under a 2-clause BSD licence since version 3.8. * gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2.
* gnu: fbcat, slepc: Use INVOKE.Tobias Geerinckx-Rice2018-01-29
| | | | | | * gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/maths.scm (slepc)[arguments]: Likewise.
* gnu: openspecfun: Update to 0.5.3.Tobias Geerinckx-Rice2018-01-29
| | | | * gnu/packages/maths.scm (openspecfun): Update to 0.5.3.
* gnu: Fix copyright symbol.Ricardo Wurmus2017-12-24
| | | | * gnu/packages/maths.scm: Fix copyright line for Dave Love.
* gnu, doc: Use HTTPS for cran.r-project.org home pages.Tobias Geerinckx-Rice2017-12-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm) (r-maldiquant, r-gprofiler)[home-page]: Use HTTPS. * gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape) (r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle) (r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim) (r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken) (r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise. * gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab) [home-page]: Likewise. * gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise. * gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign) (r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability) (r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr) (r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports) (r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops) (r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options) (r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel) (r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3) (r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots) (r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools) (r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp) (r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn) (r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]: Likewise. * gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]: Likewise. * doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
* gnu: openblas: Build with LAPACK.Dave Love2017-12-23
| | | | | | | | * gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK; add set-extralib phase. [inputs]: Add fortran-lib. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: wxmaxima: Update to 17.10.1.Kei Kebreau2017-12-19
| | | | * gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
* gnu: ceres-solver: Update to 1.13.0.Eric Bavier2017-12-15
| | | | * gnu/packages/maths.scm (ceres-solver): Update to 1.13.0.
* gnu: glpk: Update to 4.64.Efraim Flashner2017-12-09
| | | | * gnu/packages/maths.scm (glpk): Update to 4.64.
* gnu: coda: Update to 2.18.3.Tobias Geerinckx-Rice2017-12-04
| | | | * gnu/packages/maths.scm (coda): Update to 2.18.3.
* gnu: r-pracma: Update to 2.1.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
* gnu: Move more packages from python to python-web.Ludovic Courtès2017-11-16
| | | | | | | | | | | | | * gnu/packages/python.scm (python-requests, python2-requests) (python-requests-2.7, python-oauthlib, python2-oauthlib) (python-furl, python2-furl, python-wsgi-intercept) (python-publicsuffix, python2-publicsuffix) (python-publicsuffix2, python2-publicsuffix2): Move to... * gnu/packages/python-web.scm: ... here. * gnu/packages/bioinformatics.scm, gnu/packages/finance.scm: gnu/packages/maths.scm, gnu/packages/terminals.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust accordingly.
* gnu: Remove "open source" from descriptions.Ricardo Wurmus2017-11-08
| | | | | | | | | | | | All software in Guix is Free Software. * gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string. * gnu/packages/firmware.scm (seabios)[description]: Likewise. * gnu/packages/libupnp.scm (libupnp)[description]: Likewise. * gnu/packages/maths.scm (cubicle)[description]: Likewise. * gnu/packages/mingw.scm (mingw-w64)[description]: Likewise. * gnu/packages/game-development.scm (openmw)[description]: Likewise. [synopsis]: Remove "Free software".
* gnu: units: Add readline input.Eric Bavier2017-11-01
| | | | * gnu/packages/maths.scm (units)[inputs]: Add readline.
* gnu: units: Add python input.Eric Bavier2017-11-01
| | | | | * gnu/packages/maths.scm (units)[inputs]: New field. [arguments]: New field. Add 'wrap-units_cur phase.
* gnu: units: Update to 2.16.Eric Bavier2017-11-01
| | | | * gnu/packages/maths.scm (units): Update to 2.16.
* gnu: dealii: Update to 8.5.1.Eric Bavier2017-10-24
| | | | | | Fixes compilation with boost@1.64.0. * gnu/packages/maths.scm (dealii): Update to 8.5.1.
* gnu: p4est: Update to 2.0.Eric Bavier2017-10-24
| | | | * gnu/packages/maths.scm (p4est): Update to 2.0.
* gnu: libhilbert: Remove package.Eric Bavier2017-10-24
| | | | | | | This package's source and webpage has disappeared for some time, and upstream projects (e.g. libmesh) seem to be bundling it, so we remove it for now. * gnu/packages/maths.scm (libhilbert): Remove variable.
* gnu: slepc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | * gnu/packages/maths.scm (slepc): Update to 3.8.0.
* gnu: petsc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | | * gnu/packages/maths.scm (petsc): Update to 3.8.0 [native-inputs]: Remove perl, which is no longer needed.
* gnu: maxima: Update to 5.41.0.Kei Kebreau2017-10-15
| | | | * gnu/packages/maths.scm (maxima): Update to 5.41.0.
* gnu: Add lapack-3.5.Theodoros Foradis2017-10-11
| | | | | | * gnu/packages/maths.scm (lapack-3.5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* Merge branch 'staging'Marius Bakke2017-10-10
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| * Merge branch 'master' into stagingMarius Bakke2017-10-06
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| * \ Merge branch 'master' into stagingMarius Bakke2017-10-05
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| * | | gnu: Use 'modify-phases' syntax.Kei Kebreau2017-09-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal, wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use 'modify-phases' syntax. * gnu/packages/algebra.scm (arb)[arguments]: Likewise. * gnu/packages/apr.scm (apr-util)[arguments]: Likewise. * gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano, lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound, zita-convolver, zita-alsa-pcmi)[arguments]: Likewise. * gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express, flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise. * gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise. * gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise. * gnu/packages/compression.scm (sharutils)[arguments]: Likewise. * gnu/packages/conky.scm (conky)[arguments]: Likewise. * gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise. * gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise. * gnu/packages/display-managers.scm (slim)[arguments]: Likewise. * gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise. * gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise. * gnu/packages/engineering.scm (pcb)[arguments]: Likewise. * gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise. * gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise. * gnu/packages/fltk.scm (fltk)[arguments]: Likewise. * gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise. * gnu/packages/gd.scm (perl-gd)[arguments]: Likewise. * gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise. * gnu/packages/glib.scm (glibmm)[arguments]: Likewise. * gnu/packages/gl.scm (glew)[arguments]: Likewise. * gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs, libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise. * gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise. * gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise. * gnu/packages/graphics.scm (agg)[arguments]: Likewise. * gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present, python2-pycairo)[arguments]: Likewise. * gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise. * gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise. * gnu/packages/hugs.scm (hugs)[arguments]: Likewise. * gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal) [arguments]: Likewise. * gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise. * gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static, lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools) [arguments]: Likewise. * gnu/packages/lisp.scm (ccl)[arguments]: Likewise. * gnu/packages/lout.scm (lout)[arguments]: Likewise. * gnu/packages/lua.scm (luajit)[arguments]: Likewise. * gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise. * gnu/packages/mail.scm (exim)[arguments]: Likewise. * gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise. * gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun) [arguments]: Likewise. * gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise. * gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise. * gnu/packages/music.scm (solfege)[arguments]: Likewise. * gnu/packages/noweb.scm (noweb)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]: Likewise. * gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu, zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise. * gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]: Likewise. * gnu/packages/photo.scm (gphoto2)[arguments]: Likewise. * gnu/packages/popt.scm (popt)[arguments]: Likewise. * gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]: Likewise. * gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise. * gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy, python-sqlalchemy, python-docopt)[arguments]: Likewise. * gnu/packages/rdf.scm (lrdf)[arguments]: Likewise. * gnu/packages/regex.scm (tre)[arguments]: Likewise. * gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise. * gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise. * gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise. * gnu/packages/scheme.scm (racket)[arguments]: Likewise. * gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise. * gnu/packages/serveez.scm (serveez)[arguments]: Likewise. * gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise. * gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise. * gnu/packages/tcl.scm (expect)[arguments]: Likewise. * gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise. * gnu/packages/textutils.scm (recode, libgtextutils)[arguments]: Likewise. * gnu/packages/time.scm (time)[arguments]: Likewise. * gnu/packages/tor.scm (privoxy)[arguments]: Likewise. * gnu/packages/uucp.scm (uucp)[arguments]: Likewise. * gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise. * gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise. * gnu/packages/web.scm (tinyproxy)[arguments]: Likewise. * gnu/packages/wicd.scm (wicd)[arguments]: Likewise. * gnu/packages/wm.scm (bspwm)[arguments]: Likewise. * gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise. * gnu/packages/xfce.scm (xfconf)[arguments]: Likewise. * gnu/packages/xfig.scm (transfig)[arguments]: Likewise. * gnu/packages/xorg.scm (imake)[arguments]: Likewise.
* | | | gnu: Add hdf-java.Thomas Danckaert2017-10-10
| |_|/ |/| | | | | | | | * gnu/packages/maths.scm (hdf-java): New variable.
* | | gnu: octave: Reference makeinfo with absolute path.Arun Isaac2017-10-06
| |/ |/| | | | | | | | | * gnu/packages/maths.scm (octave)[arguments]: Add configure-makeinfo phase. [inputs]: Add texinfo. [native-inputs]: Remove texinfo.
* | Update e-mail for Theodoros Foradis.Theodoros Foradis2017-10-03
|/ | | | | | | | | | | | | | | | | | * .mailmap: Add entry. * gnu/packages/aspell.scm: Replace theodoros.for@openmailbox.org with current address. * gnu/packages/compression.scm: Likewise. * gnu/packages/electronics.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/fpga.scm: Likewise. * gnu/packages/graphviz.scm: Likewise. * gnu/packages/guile.scm: Likewise. * gnu/packages/libusb.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/messaging.scm: Likewise. * gnu/packages/uml.scm: Likewise. * gnu/packages/wxwidgets.scm: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add BLIS.Ludovic Courtès2017-09-07
| | | | | | | * gnu/packages/maths.scm (make-blis): New procedure. (blis, ignorance): New variables. (blis/x86_64): New macro. (blis-sandybridge, blis-haswell, blis-knl): New variables.
* gnu: pt-scotch32: use keyword arguments from "scotch32"Paul Garlick2017-09-04
| | | | | | | | *gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword arguments from "scotch32" package, ensuring that the INTSIZE32 macro is set Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: netcdf: Fix reproducibility issue; remove unneeded references.Thomas Danckaert2017-09-01
| | | | | * gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded 'Configured On' date; truncate reference to compiler store item.
* gnu: hdf4: Avoid unneeded store references to compilers.Thomas Danckaert2017-09-01
| | | | | * gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to truncate hashes of compiler store items.
* gnu: hdf5: Avoid unneeded store references to compilers.Thomas Danckaert2017-09-01
| | | | | * gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch "libhdf5.settings", removing references to the C/C++/Fortran compilers.
* gnu: hdf5: Add output for fortran interface.Thomas Danckaert2017-09-01
| | | | | | | | * gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran. [outputs]: Add "fortran". [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran output to the runpath of the Fortran libs; add a 'split phase to move all Fortran-related files to the the Fortran output store location.
* gnu: Add pt-scotch32.Paul Garlick2017-08-31
| | | | | | * gnu/packages/maths.scm (pt-scotch32): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add "scotch32".Paul Garlick2017-08-31
| | | | | | * gnu/packages/maths.scm (scotch32): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: coda: Update to 2.18.2.Thomas Danckaert2017-08-30
| | | | * gnu/packages/maths.scm (coda): Update to 2.18.2.
* Update e-mail for Kei Kebreau.Kei Kebreau2017-08-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * .mailmap: Map kei@openmailbox.org to current address. * gnu/local.mk: Replace kei@openmailbox.org to current address. * gnu/packages/backup.scm: Likewise. * gnu/packages/calendar.scm: Likewise. * gnu/packages/check.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/fltk.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/game-development.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gnustep.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/hexedit.scm: Likewise. * gnu/packages/image.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/xfce.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/tcl.scm: Likewise. * gnu/packages/textutils.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/web.scm: Likewise. * gnu/packages/web-browsers.scm: Likewise. * gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
* Merge branch 'core-updates'Marius Bakke2017-08-26
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| * Merge branch 'master' into core-updatesMarius Bakke2017-08-21
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| * \ Merge branch 'master' into core-updatesMark H Weaver2017-08-15
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