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* gnu: Move sqlite to separate module.Ricardo Wurmus2019-01-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5, sqlite-with-column-metadata): Move variables from here... * gnu/packages/sqlite.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/apl.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/code.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/dc.scm, gnu/packages/disk.scm, gnu/packages/ebook.scm, gnu/packages/education.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/file-systems.scm, gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gps.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/kodi.scm, gnu/packages/lisp.scm, gnu/packages/mail.scm, gnu/packages/messaging.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nfs.scm, gnu/packages/ocaml.scm, gnu/packages/package-management.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/php.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/scheme.scm, gnu/packages/sync.scm, gnu/packages/syndication.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/web-browsers.scm, gnu/packages/webkit.scm: Adjust module references.
* gnu: Separate Python core packages from the rest.Ricardo Wurmus2019-01-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
* gnu: r-rmysql: Move from databases.scm to cran.scmRicardo Wurmus2019-01-07
| | | | | * gnu/packages/databases.scm (r-rmysql): Move from here... * gnu/packages/cran.scm (r-rmysql): ...to here.
* gnu: recutils: Update to 1.8.Efraim Flashner2019-01-06
| | | | | | | | | * gnu/packages/databases.scm (recutils): Update to 1.8. [source]: Remove snippet. [arguments]: Remove custom 'set-bash4.4-header-location phase. Enable parallel tests. [inputs]: Move check ... [native-inputs]: ... to here. Add pkg-config.
* gnu: sqlite: Replace with 3.26.0 [security fixes].Alex Vong2018-12-18
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/33751>. Reported by Marius Bakke <mbakke@fastmail.com>. * gnu/packages/databases.scm (sqlite-3.26.0): New public variable. (sqlite)[replacement]: Use it. (sqlite-with-fts5): Use 'package/inherit'. (sqlite-with-column-metadata): Likewise. Modified-by: Mark H Weaver <mhw@netris.org>
* gnu: mongo-tools: Fix build.Christopher Baines2018-12-04
| | | | | | | I guess this broke when upgrading go. I did try upgrading to the later patch and minor releases, but they had similar problems, so lets upgrade separately. * gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
* Merge branch 'master' into core-updatesMarius Bakke2018-11-29
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| * gnu: sqlcipher: Update to 3.4.2.Brett Gilio2018-11-24
| | | | | | | | | | | | * gnu/packages/databases.scm (sqlcipher): Update to 3.4.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | gnu: mariadb: Update to 10.1.37 [security fixes].Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156, and CVE-2018-3251. See <https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.37.
* | gnu: databases: Return #t from all phases.Mark H Weaver2018-11-14
| | | | | | | | | | | | * gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb) (sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from all phases, use invoke where appropriate, and remove vestigial plumbing.
* | Merge branch 'master' into core-updatesMarius Bakke2018-11-14
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| * gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].Leo Famulari2018-11-11
| | | | | | | | * gnu/packages/databases.scm (postgresql): Update to 10.6.
| * gnu: mdbtools: Fetch sources from git.Ricardo Wurmus2018-11-11
| | | | | | | | * gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
| * gnu: mdbtools: Remove custom bootstrap phase.Ricardo Wurmus2018-11-11
| | | | | | | | * gnu/packages/databases.scm (mdbtools)[arguments]: Remove.
* | gnu: python-rq: Update to 0.12.0.Efraim Flashner2018-11-11
| | | | | | | | * gnu/packages/databases.scm (python-rq): Update to 0.12.0.
* | gnu: python-alembic: Update to 1.0.2.Efraim Flashner2018-11-11
| | | | | | | | | | * gnu/packages/databases.scm (python-alembic, python2-alembic): Update to 1.0.2.
* | Merge branch 'master' into core-updatesMarius Bakke2018-11-09
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| * gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].Leo Famulari2018-11-08
| | | | | | | | * gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
* | gnu: rocksdb: Update to 5.15.10.Marius Bakke2018-11-07
| | | | | | | | * gnu/packages/databases.scm (rocksdb): Update to 5.15.10.
* | gnu: rocksdb: Don't use unstable tarball.Marius Bakke2018-11-07
| | | | | | | | * gnu/packages/databases.scm (rocksdb)[source]: Use GIT-FETCH.
* | Merge branch 'master' into core-updatesMarius Bakke2018-11-05
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| * gnu: qt: Use system sqlite.Efraim Flashner2018-10-28
| | | | | | | | | | | | | | | | * gnu/packages/databases.scm (sqlite-with-column-metadata): New variable. * gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite. [inputs]: Add sqlite-with-column-metadata. [arguments]: Add configure-flag to use system sqlite.
| * gnu: mongodb: Use INVOKE.Tobias Geerinckx-Rice2018-10-24
| | | | | | | | | | * gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for SYSTEM*.
* | Merge branch 'master' into core-updatesMarius Bakke2018-10-21
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| * gnu: guile-wiredtiger: Update to 0.7.0.Amirouche2018-10-19
| | | | | | | | | | | | | | | | | | * gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0. [inputs]: Replace wiredtiger with wiredtiger-3 [propagated-inputs]: Remove guile-lib, add guile-bytestructures [description]: Update it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add wiredtiger 3.1.0Amirouche2018-10-19
| | | | | | | | | | | | | | * gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from wiredtiger Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge branch 'master' into core-updatesMarius Bakke2018-10-17
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| * gnu: python-pickleshare: Update to 0.7.5.Tobias Geerinckx-Rice2018-10-10
| | | | | | | | * gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.
* | Merge branch 'master' into core-updatesMarius Bakke2018-10-05
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| * gnu: python-fakeredis: Edit description.Tobias Geerinckx-Rice2018-09-28
| | | | | | | | | | * gnu/packages/databases.scm (python-fakeredis)[description]: Fix (upstream) typo. Get carried away.
* | gnu: recutils: Adjust Gnulib to libc 2.28.Ludovic Courtès2018-10-03
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/32776>. * gnu/packages/databases.scm (recutils)[modules, snippet]: New fields.
* | Merge branch 'master' into core-updatesMarius Bakke2018-09-26
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| * gnu: perl-dbd-mysql: Update to 4.048.Tobias Geerinckx-Rice2018-09-21
| | | | | | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
* | Merge branch 'master' into core-updatesLeo Famulari2018-09-13
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| * gnu: perl-dbd-mysql: Update to 4.047.Tobias Geerinckx-Rice2018-09-11
| | | | | | | | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047. [arguments]: Add 'skip-library-detection' phase.
* | gnu: mariadb: Move unbundle substitutions to source snippet.Marius Bakke2018-09-09
| | | | | | | | | | | | * gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions from ... [arguments]: The 'unbundle' phase here. Rename to 'fix-pcre-detection.
* | gnu: mariadb: Update to 10.1.36.Marius Bakke2018-09-09
| | | | | | | | | | * gnu/packages/databases.scm (mariadb): Update to 10.1.36. [arguments]: Disable one new test.
* | Merge branch 'staging' into core-updatesMarius Bakke2018-08-25
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| * | Merge branch 'master' into stagingMarius Bakke2018-08-25
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| | * gnu: boost: Move 1.59.0 definition to boost.scm.Ludovic Courtès2018-08-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes a regression introduced in commit 7cbf06d8c2935abfc6c688cf3f9b99e0e5393960 where the top-level code of these two modules would depend on each other, leading to "boost: unbound variable" kind of errors in some circumstances. * gnu/packages/databases.scm (boost-for-mysql): Move to... * gnu/packages/boost.scm (boost-for-mysql): ... here. Make public and add 'properties' field.
| | * gnu: perl-dbd-mysql: Update to 4.046.Leo Famulari2018-08-22
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046. [source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'. * gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
| * | Merge branch 'master' into stagingMarius Bakke2018-08-22
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| | * gnu: Add sqlcrush.Tobias Geerinckx-Rice2018-08-22
| | | | | | | | | | | | * gnu/packages/databases.smc (sqlcrush): New public variable.
| | * gnu: Add python-pymysql.Tobias Geerinckx-Rice2018-08-22
| | | | | | | | | | | | | | | * gnu/packages/databases.scm (python-pymysql, python2-pymysql): New public variables.
| | * gnu: mysql: Update to 5.7.23.Tobias Geerinckx-Rice2018-08-20
| | | | | | | | | | | | * gnu/packages/databases.scm (mysql): Update to 5.7.23.
| | * gnu: mysql: Fix build.Tobias Geerinckx-Rice2018-08-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | MySQL demands boost@1.59.0, and lying about it no longer works: sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’: sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &) ^ [...] * gnu/packages/databases.scm (boost-for-mysql): New variable. (mysql)[inputs]: Use that instead of the regular boost. [arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
| | * gnu: python-pyodbc: Update to 4.0.24.Tobias Geerinckx-Rice2018-08-20
| | | | | | | | | | | | * gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
| | * gnu: python-mysqlclient: Update to 1.3.13.Tobias Geerinckx-Rice2018-08-20
| | | | | | | | | | | | * gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
| | * gnu: perl-dbd-sqlite: Update to 1.58.Tobias Geerinckx-Rice2018-08-20
| | | | | | | | | | | | * gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
| | * gnu: Update virtuoso-ose to 7.2.5.Roel Janssen2018-08-20
| | | | | | | | | | | | * gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.5.
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