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* gnu: Remove ".git" from "https://github/…/….git".Ludovic Courtès2020-07-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix swh) would sometimes return #f for these because the ".git" URLs are redirects to the non-".git" URLs. Consequently, 'guix lint -c archival' would keep saying "scheduled Software Heritage archival"; likewise, the fallback download code would fail. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm, gnu/packages/android.scm, gnu/packages/animation.scm, gnu/packages/arcan.scm, gnu/packages/assembly.scm, gnu/packages/audio.scm, gnu/packages/authentication.scm, gnu/packages/avr.scm, gnu/packages/axoloti.scm, gnu/packages/backup.scm, gnu/packages/bash.scm, gnu/packages/benchmark.scm, gnu/packages/bioconductor.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/boost.scm, gnu/packages/build-tools.scm, gnu/packages/c.scm, gnu/packages/calendar.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/chez.scm, gnu/packages/clojure.scm, gnu/packages/code.scm, gnu/packages/compression.scm, gnu/packages/compton.scm, gnu/packages/coq.scm, gnu/packages/cpp.scm, gnu/packages/cran.scm, gnu/packages/crypto.scm, gnu/packages/curl.scm, gnu/packages/databases.scm, gnu/packages/datastructures.scm, gnu/packages/debug.scm, gnu/packages/disk.scm, gnu/packages/distributed.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/dns.scm, gnu/packages/docker.scm, gnu/packages/education.scm, gnu/packages/efi.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/embedded.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/erlang.scm, gnu/packages/fabric-management.scm, gnu/packages/file-systems.scm, gnu/packages/finance.scm, gnu/packages/firmware.scm, gnu/packages/flashing-tools.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/fpga.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/genealogy.scm, gnu/packages/genimage.scm, gnu/packages/geo.scm, gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/gnome-xyz.scm, gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm, gnu/packages/golang.scm, gnu/packages/gpodder.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/groff.scm, gnu/packages/groovy.scm, gnu/packages/gtk.scm, gnu/packages/guile-xyz.scm, gnu/packages/guile.scm, gnu/packages/hardware.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-xyz.scm, gnu/packages/hexedit.scm, gnu/packages/i2p.scm, gnu/packages/ibus.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/ipfs.scm, gnu/packages/java-graphics.scm, gnu/packages/java-maths.scm, gnu/packages/java.scm, gnu/packages/javascript.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/jupyter.scm, gnu/packages/kodi.scm, gnu/packages/language.scm, gnu/packages/lego.scm, gnu/packages/less.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm, gnu/packages/lirc.scm, gnu/packages/lisp-xyz.scm, gnu/packages/llvm.scm, gnu/packages/logging.scm, gnu/packages/lolcode.scm, gnu/packages/lua.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/maths.scm, gnu/packages/maven.scm, gnu/packages/mes.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/node-xyz.scm, gnu/packages/ocaml.scm, gnu/packages/ocr.scm, gnu/packages/onc-rpc.scm, gnu/packages/opencl.scm, gnu/packages/opencog.scm, gnu/packages/pantheon.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/perl6.scm, gnu/packages/phabricator.scm, gnu/packages/popt.scm, gnu/packages/printers.scm, gnu/packages/prolog.scm, gnu/packages/protobuf.scm, gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/qt.scm, gnu/packages/radio.scm, gnu/packages/rails.scm, gnu/packages/rdf.scm, gnu/packages/rednotebook.scm, gnu/packages/rpc.scm, gnu/packages/rsync.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/screen.scm, gnu/packages/security-token.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/shellutils.scm, gnu/packages/simh.scm, gnu/packages/sml.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/stenography.scm, gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/synergy.scm, gnu/packages/telephony.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/texinfo.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tmux.scm, gnu/packages/tor.scm, gnu/packages/toys.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/virtualization.scm, gnu/packages/vlang.scm, gnu/packages/vnc.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wireservice.scm, gnu/packages/wm.scm, gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
* gnu: r-processx: Update to 3.4.3.Tobias Geerinckx-Rice2020-07-11
| | | | * gnu/packages/cran.scm (r-processx): Update to 3.4.3.
* gnu: r-htmltable: Update to 2.0.1.Tobias Geerinckx-Rice2020-07-11
| | | | * gnu/packages/cran.scm (r-htmltable): Update to 2.0.1.
* gnu: r-rjava: Update to 0.9-13.Tanguy Le Carrour2020-07-08
| | | | | | * gnu/packages/cran.scm (r-rjava): Update to 0.9-13. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: r-dalex: Update to 1.3.0.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-dalex): Update to 1.3.0.
* gnu: r-spdata: Update to 0.3.8.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-spdata): Update to 0.3.8.
* gnu: r-glmmtmb: Update to 1.0.2.1.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-glmmtmb): Update to 1.0.2.1.
* gnu: r-abn: Update to 2.2.2.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-abn): Update to 2.2.2.
* gnu: r-mda: Update to 0.5-2.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-mda): Update to 0.5-2.
* gnu: r-ingredients: Update to 1.3.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-ingredients): Update to 1.3.0.
* gnu: r-spdep: Update to 1.1-5.Ricardo Wurmus2020-07-02
| | | | | * gnu/packages/cran.scm (r-spdep): Update to 1.1-5. [native-inputs]: Add r-knitr.
* gnu: r-blockmodeling: Update to 1.0.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-blockmodeling): Update to 1.0.0.
* gnu: r-future-apply: Update to 1.6.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-future-apply): Update to 1.6.0.
* gnu: r-fs: Update to 1.4.2.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-fs): Update to 1.4.2.
* gnu: r-rdpack: Update to 1.0.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-rdpack): Update to 1.0.0.
* gnu: r-directlabels: Update to 2020.6.17.Ricardo Wurmus2020-06-28
| | | | | * gnu/packages/cran.scm (r-directlabels): Update to 2020.6.17. [native-inputs]: Add r-knitr.
* gnu: r-rgdal: Update to 1.5-12.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-rgdal): Update to 1.5-12.
* gnu: r-flexdashboard: Update to 0.5.2.Ricardo Wurmus2020-06-28
| | | | | * gnu/packages/cran.scm (r-flexdashboard): Update to 0.5.2. [source]: Delete minified JavaScript files in a snippet.
* gnu: r-rcppparallel: Update to 5.0.2.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.2.
* gnu: r-emmeans: Update to 1.4.8.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.4.8.
* gnu: r-raster: Update to 3.3-7.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-raster): Update to 3.3-7.
* gnu: r-sjlabelled: Update to 1.1.6.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.6.
* gnu: r-officer: Update to 0.3.12.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-officer): Update to 0.3.12.
* gnu: r-ggpubr: Update to 0.4.0.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-ggpubr): Update to 0.4.0.
* gnu: r-renv: Update to 0.11.0.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-renv): Update to 0.11.0.
* gnu: r-jsonlite: Update to 1.7.0.Ricardo Wurmus2020-06-28
| | | | | * gnu/packages/cran.scm (r-jsonlite): Update to 1.7.0. [native-inputs]: Add r-knitr.
* gnu: Add r-shapforxgboost.Peter Lo2020-06-27
| | | | | | * gnu/packages/cran.scm (r-shapforxgboost): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-patchwork: Update to 1.0.1.Ricardo Wurmus2020-06-24
| | | | * gnu/packages/cran.scm (r-patchwork): Update to 1.0.1.
* gnu: r-ggforce: Update to 0.3.2.Ricardo Wurmus2020-06-24
| | | | * gnu/packages/cran.scm (r-ggforce): Update to 0.3.2.
* gnu: r-bookdown: Update to 0.20.Ricardo Wurmus2020-06-24
| | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.20.
* gnu: r-docopt: Update to 0.7.1.Ricardo Wurmus2020-06-24
| | | | * gnu/packages/cran.scm (r-docopt): Update to 0.7.1.
* gnu: r-magick: Update to 2.4.0.Ricardo Wurmus2020-06-24
| | | | | * gnu/packages/cran.scm (r-magick): Update to 2.4.0. [native-inputs]: Add r-knitr.
* gnu: r-recipes: Update to 0.1.13.Ricardo Wurmus2020-06-24
| | | | | * gnu/packages/cran.scm (r-recipes): Update to 0.1.13. [propagated-inputs]: Add r-lifecycle.
* gnu: r-gower: Update to 0.2.2.Ricardo Wurmus2020-06-24
| | | | * gnu/packages/cran.scm (r-gower): Update to 0.2.2.
* gnu: Add r-kmer.Ricardo Wurmus2020-06-23
| | | | | | * gnu/packages/cran.scm (r-kmer): New variable. Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
* gnu: Add r-phylogram.Ricardo Wurmus2020-06-23
| | | | | | * gnu/packages/cran.scm (r-phylogram): New variable. Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
* gnu: Add r-fourcseq.Ricardo Wurmus2020-06-23
| | | | | | * gnu/packages/cran.scm (r-fourcseq): New variable. Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
* gnu: Add r-lsd.Ricardo Wurmus2020-06-23
| | | | | | * gnu/packages/cran.scm (r-lsd): New variable. Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
* gnu: r-zoo: Move to (gnu packages cran).Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/statistics.scm (r-zoo): Move this variable from here... * gnu/packages/cran.scm (r-zoo): ...to here.
* gnu: r-directlabels: Move to (gnu packages cran).Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/statistics.scm (r-directlabels): Move this variable from here... * gnu/packages/cran.scm (r-directlabels): ...to here.
* gnu: r-boruta: Move to (gnu packages cran).Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/statistics.scm (r-boruta): Move this variable from here... * gnu/packages/cran.scm (r-boruta): ...to here.
* gnu: r-isoband: Update to 0.2.2.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-isoband): Update to 0.2.2. [propagated-inputs]: Remove r-rcpp.
* gnu: r-zvcv: Update to 2.1.0.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-zvcv): Update to 2.1.0. [propagated-inputs]: Remove r-partitions; add r-bh, r-dplyr, r-magrittr, and r-rlinsolve.
* gnu: r-umap: Update to 0.2.6.0.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-umap): Update to 0.2.6.0.
* gnu: r-ldheatmap: Update to 0.99-8.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-8.
* gnu: r-nonnest2: Update to 0.5-4.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-nonnest2): Update to 0.5-4.
* gnu: r-rcppgsl: Update to 0.3.8.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.8. [native-inputs]: Remove r-knitr.
* gnu: r-ggeffects: Update to 0.15.0.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-ggeffects): Update to 0.15.0.
* gnu: r-bayestestr: Update to 0.7.0.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-bayestestr): Update to 0.7.0.
* gnu: r-rstatix: Update to 0.6.0.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-rstatix): Update to 0.6.0. [propagated-inputs]: Add r-generics.
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