| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.20.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.24.0.
[propagated-inputs]: Add r-annotationdbi, r-annotationhub, r-biocgenerics,
r-biocstyle, r-biostrings, r-ggplot2, r-msmstests, r-purrr, r-rlang, r-runit,
r-stringr, r-tibble, and r-xtable.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.82.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.28.0.
[propagated-inputs]: Remove r-rcpp.
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* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.58.0.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.68.0.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.60.0.
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* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.24.1.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.38.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.22.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.56.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.64.0.
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* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.58.0.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.36.0.
[propagated-inputs]: Add r-matrixgenerics.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.20.0.
[propagated-inputs]: Add r-matrixgenerics.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.6.0.
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* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.24.1.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.0.
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* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.52.0.
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* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.50.0.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.42.0.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.46.0.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.0.
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* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.0.
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* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.2.
[propagated-inputs]: Add r-iranges.
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* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
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* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.56.0.
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* gnu/packages/bioinformatics.scm (r-category): Update to 2.56.0.
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