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| * gnu: Remove now unneeded 'unpack' phases for unzip.Ludovic Courtès2015-02-27
| | | | | | | | | | | | | | | | | | This is a followup to commit cd0385b. * gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove 'unpack' phase. * gnu/packages/image.scm (freeimage): Likewise. * gnu/packages/python.scm (python2-cssutils): Likewise.
* | gnu: Add crossmap.Ricardo Wurmus2015-03-02
| | | | | | | | | | | | * gnu/packages/bioinformatics.scm (crossmap): New variable. * gnu/packages/patches/crossmap-allow-system-pysam.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* | gnu: Add CLIPper.Ricardo Wurmus2015-03-02
| | | | | | | | * gnu/packages/bioinformatics.scm (clipper): New variable.
* | gnu: Add MACS.Ricardo Wurmus2015-03-02
| | | | | | | | * gnu/packages/bioinformatics.scm (macs): New variable.
* | gnu: Add pybedtools.Ricardo Wurmus2015-03-02
|/ | | | * gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
* gnu: Add HTSeq.Ricardo Wurmus2015-02-20
| | | | * gnu/packages/bioinformatics.scm (htseq): New variable.
* gnu: Add RSeQC.Ricardo Wurmus2015-02-19
| | | | * gnu/packages/bioinformatics.scm (rseqc): New variable.
* gnu: Add bedops.Ricardo Wurmus2015-02-13
| | | | * gnu/packages/bioinformatics.scm (bedops): New variable.
* gnu: hisat: fix build on non-x86_64.Ricardo Wurmus2015-02-12
| | | | | * gnu/packages/bioinformatics.scm (hisat): Add "POPCNT_CAPABILITY=0" to make-flags on architectures other than x86_64.
* gnu: Add STAR.Ricardo Wurmus2015-02-10
| | | | * gnu/packages/bioinformatics.scm (star): New variable.
* gnu: Add HISAT.Ricardo Wurmus2015-02-10
| | | | * gnu/packages/bioinformatics.scm (hisat): New variable.
* gnu: Add flexbar.Ricardo Wurmus2015-02-09
| | | | * gnu/packages/bioinformatics.scm (flexbar): New variable.
* gnu: Add seqan.Ricardo Wurmus2015-02-09
| | | | * gnu/packages/bioinformatics.scm (seqan): New variable.
* gnu: bowtie: fix build errorsRicardo Wurmus2015-01-30
| | | | | | | * gnu/packages/bioinformatics.scm (bowtie): Add 'supported-systems' field and add Makefile patch. * gnu/packages/patches/bowtie-fix-makefile.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add bowtieRicardo Wurmus2014-12-19
| | | | | | * gnu/packages/bioinformatics.scm (bowtie): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add bedtoolsRicardo Wurmus2014-12-16
| | | | | | * gnu/packages/bioinformatics.scm (bedtools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: samtools: disable tests for non-64-bit systemsRicardo Wurmus2014-12-16
| | | | | | | * gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit systems because of an upstream bug in the test data. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add samtoolsRicardo Wurmus2014-12-13
* gnu/packages/bioinformatics.scm: New file * gnu-system.am (GNU_SYSTEM_MODULES): Add it Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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