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* gnu: Add Diversitree.Leo Famulari2018-03-15
| | | | * gnu/packages/bioinformatics.scm (r-diversitree): New variable.
* gnu: Add pigx-bsseq.Ricardo Wurmus2018-03-11
| | | | * gnu/packages/bioinformatics.scm (pigx-bsseq): New variable.
* gnu: Add pigx-chipseq.Ricardo Wurmus2018-03-11
| | | | * gnu/packages/bioinformatics.scm (pigx-chipseq): New variable.
* gnu: r-rhdf5lib: Make build reproducible.Ricardo Wurmus2018-03-09
| | | | | * gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp and host system kernel version.
* gnu: Add r-phangorn.Ricardo Wurmus2018-03-08
| | | | * gnu/packages/bioinformatics.scm (r-phangorn): New variable.
* gnu: r-ape: Move to (gnu packages cran).Ricardo Wurmus2018-03-08
| | | | | * gnu/packages/bioinformatics.scm (r-ape): Move from here... * gnu/packages/cran.scm (r-ape): ...to here.
* gnu: r-dropbead: Update to 0-2.d746c6f.Ricardo Wurmus2018-03-08
| | | | * gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f.
* gnu: Add pigx-rnaseq.Ricardo Wurmus2018-03-07
| | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable.
* gnu: samtools: Update to 1.7.Ricardo Wurmus2018-03-06
| | | | * gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
* gnu: htslib: Update to 1.7.Ricardo Wurmus2018-03-06
| | | | | * gnu/packages/bioinformatics.scm (htslib): Update to 1.7. [arguments]: Remove field.
* gnu: r-rhdf5: Make build reproducible.Ricardo Wurmus2018-03-06
| | | | | * gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and host system information from settings file.
* gnu: piranha: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source file-name.
* gnu: libdivsufsort: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a source file-name.
* gnu: seek: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (seek)[source]: Declare a source file-name.
* gnu: r-dropbead: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source file-name.
* gnu: Add dropseq-tools.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
* gnu: Add java-picard-2.10.3.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
* gnu: Add java-htsjdk-2.10.1.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
* gnu: Add java-htsjdk-latest.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
* gnu: Add java-biojava-alignment-4.0.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
* gnu: Add java-biojava-phylo-4.0.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
* gnu: Add java-biojava-core-4.0.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
* gnu: Add java-biojava-alignment.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
* gnu: Add java-biojava-phylo.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
* gnu: Add java-forester-1.005.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
* gnu: Add java-forester.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-forester): New variable.
* gnu: Add java-biojava-core.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
* gnu: Add fastqc.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (fastqc): New variable.
* gnu: cutadapt: Update to 1.16.Ricardo Wurmus2018-03-02
| | | | | | | * gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16. [source]: Fetch via git. [arguments]: Remove. [native-inputs]: Replace python-nose with python-pytest.
* gnu: r-scran: Update to 1.6.8.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
* gnu: r-wgcna: Update to 1.63.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
* gnu: r-topgo: Update to 2.30.1.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
* gnu: r-genomicranges: Update to 1.30.3.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
* gnu: r-limma: Update to 3.34.9.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
* gnu: r-edger: Update to 3.20.9.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
* gnu: r-shortread: Update to 1.36.1.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
* gnu: r-dexseq: Update to 1.24.3.Ricardo Wurmus2018-03-01
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
* gnu: r-qtl: Update to 1.42-8.Ricardo Wurmus2018-02-22
| | | | * gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-8.
* gnu: r-delayedmatrixstats: Update to 1.0.3.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.0.3.
* gnu: r-scater: Update to 1.6.3.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-scater): Update to 1.6.3.
* gnu: r-gviz: Update to 1.22.3.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.3.
* gnu: r-gprofiler: Update to 0.6.4.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.4.
* gnu: r-ensembldb: Update to 2.2.2.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.2.
* gnu: r-seurat: Update to 2.2.1.Ricardo Wurmus2018-02-19
| | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.1. [propagated-inputs]: Remove r-nmf; add r-metap.
* gnu: r-qtl: Update to 1.42-7.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-7.
* gnu: r-genomicranges: Update to 1.30.2.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.2.
* gnu: r-getopt: Update to 1.20.2.Ricardo Wurmus2018-02-19
| | | | * gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.2.
* gnu: r-bookdown: Update to 0.7.Ricardo Wurmus2018-02-19
| | | | | * gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.7. [propagated-inputs]: Add r-tinytex.
* Merge branch 'master' into core-updatesRicardo Wurmus2018-02-18
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| * gnu: vsearch: Update to 2.7.1.Ben Woodcroft2018-02-17
| | | | | | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.1.
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