| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (r-diversitree): New variable.
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* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable.
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* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable.
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* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp
and host system kernel version.
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* gnu/packages/bioinformatics.scm (r-phangorn): New variable.
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* gnu/packages/bioinformatics.scm (r-ape): Move from here...
* gnu/packages/cran.scm (r-ape): ...to here.
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* gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f.
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* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
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* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
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* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
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* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
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* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
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* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
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* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
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* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
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* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
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* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
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* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
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* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
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* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
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* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
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* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
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* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
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* gnu/packages/bioinformatics.scm (java-forester): New variable.
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* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
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* gnu/packages/bioinformatics.scm (fastqc): New variable.
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* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
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* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
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* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
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* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-8.
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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.0.3.
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* gnu/packages/bioinformatics.scm (r-scater): Update to 1.6.3.
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* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.3.
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* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.4.
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* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.2.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.1.
[propagated-inputs]: Remove r-nmf; add r-metap.
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* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-7.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.2.
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* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.2.
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* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.7.
[propagated-inputs]: Add r-tinytex.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.1.
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